Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_28390

Experiment: L-Aspartic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_28385 and AO353_28390 are separated by 342 nucleotidesAO353_28390 and AO353_28395 are separated by 617 nucleotides AO353_28385: AO353_28385 - twitching motility protein PilT, at 6,187,369 to 6,188,109 _28385 AO353_28390: AO353_28390 - hypothetical protein, at 6,188,452 to 6,188,640 _28390 AO353_28395: AO353_28395 - haloacid dehalogenase, at 6,189,258 to 6,189,911 _28395 Position (kb) 6188 6189Strain fitness (log2 ratio) -2 -1 0 1 2 3at 6187.499 kb on + strand, within AO353_28385at 6187.588 kb on + strand, within AO353_28385at 6187.588 kb on + strand, within AO353_28385at 6187.589 kb on - strand, within AO353_28385at 6187.625 kb on + strand, within AO353_28385at 6187.726 kb on + strand, within AO353_28385at 6187.726 kb on + strand, within AO353_28385at 6187.840 kb on + strand, within AO353_28385at 6187.840 kb on + strand, within AO353_28385at 6187.841 kb on - strand, within AO353_28385at 6187.882 kb on + strand, within AO353_28385at 6187.882 kb on + strand, within AO353_28385at 6187.883 kb on - strand, within AO353_28385at 6187.905 kb on + strand, within AO353_28385at 6188.009 kb on - strand, within AO353_28385at 6188.047 kb on + strandat 6188.178 kb on + strandat 6188.178 kb on + strandat 6188.178 kb on + strandat 6188.178 kb on + strandat 6188.178 kb on + strandat 6188.179 kb on - strandat 6188.179 kb on - strandat 6188.186 kb on + strandat 6188.187 kb on - strandat 6188.201 kb on + strandat 6188.202 kb on - strandat 6188.248 kb on + strandat 6188.249 kb on - strandat 6188.249 kb on - strandat 6188.249 kb on - strandat 6188.249 kb on - strandat 6188.251 kb on + strandat 6188.252 kb on - strandat 6188.303 kb on + strandat 6188.304 kb on - strandat 6188.304 kb on - strandat 6188.304 kb on - strandat 6188.304 kb on - strandat 6188.304 kb on - strandat 6188.307 kb on + strandat 6188.307 kb on + strandat 6188.308 kb on - strandat 6188.308 kb on - strandat 6188.308 kb on - strandat 6188.393 kb on + strandat 6188.393 kb on + strandat 6188.410 kb on + strandat 6188.443 kb on - strandat 6188.443 kb on - strandat 6188.454 kb on - strandat 6188.454 kb on - strandat 6188.457 kb on + strandat 6188.457 kb on + strandat 6188.457 kb on + strandat 6188.457 kb on + strandat 6188.457 kb on + strandat 6188.457 kb on + strandat 6188.457 kb on + strandat 6188.458 kb on - strandat 6188.458 kb on - strandat 6188.458 kb on - strandat 6188.458 kb on - strandat 6188.458 kb on - strandat 6188.460 kb on + strandat 6188.469 kb on + strandat 6188.469 kb on + strandat 6188.469 kb on + strandat 6188.470 kb on - strandat 6188.472 kb on + strand, within AO353_28390at 6188.473 kb on - strand, within AO353_28390at 6188.473 kb on - strand, within AO353_28390at 6188.570 kb on - strand, within AO353_28390at 6188.570 kb on - strand, within AO353_28390at 6188.599 kb on + strand, within AO353_28390at 6188.600 kb on - strand, within AO353_28390at 6188.600 kb on - strand, within AO353_28390at 6188.835 kb on + strandat 6188.835 kb on + strandat 6188.835 kb on + strandat 6188.835 kb on + strandat 6188.836 kb on - strandat 6188.836 kb on - strandat 6188.927 kb on + strandat 6188.928 kb on - strandat 6188.928 kb on - strandat 6188.928 kb on - strandat 6188.928 kb on - strandat 6188.928 kb on - strandat 6188.943 kb on + strandat 6188.943 kb on + strandat 6188.943 kb on + strandat 6188.943 kb on + strandat 6188.944 kb on - strandat 6188.944 kb on - strandat 6188.944 kb on - strandat 6188.952 kb on - strandat 6188.952 kb on - strandat 6188.952 kb on - strandat 6188.952 kb on - strandat 6188.952 kb on - strandat 6188.983 kb on + strandat 6188.983 kb on + strandat 6188.983 kb on + strandat 6188.983 kb on + strandat 6188.983 kb on + strandat 6188.983 kb on + strandat 6188.983 kb on + strandat 6188.984 kb on - strandat 6188.984 kb on - strandat 6188.984 kb on - strandat 6188.984 kb on - strandat 6188.984 kb on - strandat 6188.987 kb on + strandat 6188.987 kb on + strandat 6188.987 kb on + strandat 6188.987 kb on + strandat 6188.988 kb on - strandat 6188.988 kb on - strandat 6188.988 kb on - strandat 6188.988 kb on - strandat 6189.010 kb on + strandat 6189.011 kb on - strandat 6189.011 kb on - strandat 6189.045 kb on + strandat 6189.046 kb on - strandat 6189.054 kb on - strandat 6189.054 kb on - strandat 6189.089 kb on + strandat 6189.089 kb on + strandat 6189.089 kb on + strandat 6189.119 kb on - strandat 6189.183 kb on + strandat 6189.231 kb on + strandat 6189.231 kb on + strandat 6189.231 kb on + strandat 6189.231 kb on + strandat 6189.231 kb on + strandat 6189.232 kb on - strandat 6189.232 kb on - strandat 6189.255 kb on + strandat 6189.255 kb on + strandat 6189.255 kb on + strandat 6189.255 kb on + strandat 6189.255 kb on + strandat 6189.255 kb on + strandat 6189.255 kb on + strandat 6189.256 kb on - strandat 6189.256 kb on - strandat 6189.256 kb on - strandat 6189.256 kb on - strandat 6189.256 kb on - strandat 6189.256 kb on - strandat 6189.256 kb on - strandat 6189.256 kb on - strandat 6189.256 kb on - strandat 6189.265 kb on - strandat 6189.320 kb on + strandat 6189.321 kb on - strandat 6189.321 kb on - strandat 6189.323 kb on + strandat 6189.323 kb on + strandat 6189.323 kb on + strandat 6189.323 kb on + strandat 6189.323 kb on + strandat 6189.323 kb on + strandat 6189.457 kb on + strandat 6189.471 kb on - strand, within AO353_28395at 6189.578 kb on + strand, within AO353_28395at 6189.578 kb on + strand, within AO353_28395at 6189.579 kb on - strand, within AO353_28395at 6189.626 kb on + strand, within AO353_28395at 6189.626 kb on + strand, within AO353_28395at 6189.626 kb on + strand, within AO353_28395at 6189.626 kb on + strand, within AO353_28395at 6189.627 kb on - strand, within AO353_28395at 6189.627 kb on - strand, within AO353_28395at 6189.627 kb on - strand, within AO353_28395

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
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6,187,499 + AO353_28385 0.18 +0.3
6,187,588 + AO353_28385 0.30 -0.0
6,187,588 + AO353_28385 0.30 +1.1
6,187,589 - AO353_28385 0.30 -0.9
6,187,625 + AO353_28385 0.35 +1.1
6,187,726 + AO353_28385 0.48 -0.9
6,187,726 + AO353_28385 0.48 +0.2
6,187,840 + AO353_28385 0.64 +0.8
6,187,840 + AO353_28385 0.64 +0.5
6,187,841 - AO353_28385 0.64 +0.1
6,187,882 + AO353_28385 0.69 -0.2
6,187,882 + AO353_28385 0.69 -0.5
6,187,883 - AO353_28385 0.69 -0.9
6,187,905 + AO353_28385 0.72 +1.5
6,188,009 - AO353_28385 0.86 +0.1
6,188,047 + -0.0
6,188,178 + -0.9
6,188,178 + -1.6
6,188,178 + +0.8
6,188,178 + +1.2
6,188,178 + +0.9
6,188,179 - +0.4
6,188,179 - -0.6
6,188,186 + +0.1
6,188,187 - +0.6
6,188,201 + -1.9
6,188,202 - -0.1
6,188,248 + -0.9
6,188,249 - -1.1
6,188,249 - -0.1
6,188,249 - -0.5
6,188,249 - -0.8
6,188,251 + +0.3
6,188,252 - +0.3
6,188,303 + -0.6
6,188,304 - -1.5
6,188,304 - -2.4
6,188,304 - -1.4
6,188,304 - -1.1
6,188,304 - -0.9
6,188,307 + +1.1
6,188,307 + +0.6
6,188,308 - +0.6
6,188,308 - +0.3
6,188,308 - -0.4
6,188,393 + +0.2
6,188,393 + +0.8
6,188,410 + -0.7
6,188,443 - -1.9
6,188,443 - +0.6
6,188,454 - +0.2
6,188,454 - +0.2
6,188,457 + -1.3
6,188,457 + -0.2
6,188,457 + +0.6
6,188,457 + -1.6
6,188,457 + -1.5
6,188,457 + +3.2
6,188,457 + -1.2
6,188,458 - -0.2
6,188,458 - +0.6
6,188,458 - -0.9
6,188,458 - +2.6
6,188,458 - +1.4
6,188,460 + -0.1
6,188,469 + +1.3
6,188,469 + +0.6
6,188,469 + +0.9
6,188,470 - -1.0
6,188,472 + AO353_28390 0.11 +0.1
6,188,473 - AO353_28390 0.11 +0.1
6,188,473 - AO353_28390 0.11 -0.5
6,188,570 - AO353_28390 0.62 +0.7
6,188,570 - AO353_28390 0.62 +0.3
6,188,599 + AO353_28390 0.78 -0.1
6,188,600 - AO353_28390 0.78 +0.2
6,188,600 - AO353_28390 0.78 +0.3
6,188,835 + -0.9
6,188,835 + +0.2
6,188,835 + +1.6
6,188,835 + -2.1
6,188,836 - -0.6
6,188,836 - -1.2
6,188,927 + +1.6
6,188,928 - -1.8
6,188,928 - -2.0
6,188,928 - +0.6
6,188,928 - +0.9
6,188,928 - -0.2
6,188,943 + +0.3
6,188,943 + -0.7
6,188,943 + -1.2
6,188,943 + -0.7
6,188,944 - +0.2
6,188,944 - +0.2
6,188,944 - +0.6
6,188,952 - +1.6
6,188,952 - -0.8
6,188,952 - +0.3
6,188,952 - -0.4
6,188,952 - -1.5
6,188,983 + +0.1
6,188,983 + +0.4
6,188,983 + -2.1
6,188,983 + +1.0
6,188,983 + +0.6
6,188,983 + -1.9
6,188,983 + -1.4
6,188,984 - +0.4
6,188,984 - +0.2
6,188,984 - -0.9
6,188,984 - +0.3
6,188,984 - +0.6
6,188,987 + -0.6
6,188,987 + -1.3
6,188,987 + +0.1
6,188,987 + +0.6
6,188,988 - -0.6
6,188,988 - -0.4
6,188,988 - +0.1
6,188,988 - -0.5
6,189,010 + -0.7
6,189,011 - -1.2
6,189,011 - -0.5
6,189,045 + +2.6
6,189,046 - -0.4
6,189,054 - +0.5
6,189,054 - -0.0
6,189,089 + +0.6
6,189,089 + -1.4
6,189,089 + -0.4
6,189,119 - +1.1
6,189,183 + -1.8
6,189,231 + -1.2
6,189,231 + +0.4
6,189,231 + -2.4
6,189,231 + -1.2
6,189,231 + +1.1
6,189,232 - -1.2
6,189,232 - -0.7
6,189,255 + -0.2
6,189,255 + -0.7
6,189,255 + +0.1
6,189,255 + +0.0
6,189,255 + +0.6
6,189,255 + +0.2
6,189,255 + -0.1
6,189,256 - +0.9
6,189,256 - +1.6
6,189,256 - +1.2
6,189,256 - +1.6
6,189,256 - -0.9
6,189,256 - -0.7
6,189,256 - +0.6
6,189,256 - +2.2
6,189,256 - -0.2
6,189,265 - -2.2
6,189,320 + +0.4
6,189,321 - -0.7
6,189,321 - -0.2
6,189,323 + +0.6
6,189,323 + -1.6
6,189,323 + +1.3
6,189,323 + -0.5
6,189,323 + -1.1
6,189,323 + +0.3
6,189,457 + +1.6
6,189,471 - AO353_28395 0.33 -0.7
6,189,578 + AO353_28395 0.49 -1.0
6,189,578 + AO353_28395 0.49 -1.7
6,189,579 - AO353_28395 0.49 -0.1
6,189,626 + AO353_28395 0.56 +0.1
6,189,626 + AO353_28395 0.56 +0.2
6,189,626 + AO353_28395 0.56 +0.6
6,189,626 + AO353_28395 0.56 -0.4
6,189,627 - AO353_28395 0.56 +0.3
6,189,627 - AO353_28395 0.56 +0.4
6,189,627 - AO353_28395 0.56 -1.2

Or see this region's nucleotide sequence