Experiment: L-Aspartic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_28385 and AO353_28390 are separated by 342 nucleotides AO353_28390 and AO353_28395 are separated by 617 nucleotides
AO353_28385: AO353_28385 - twitching motility protein PilT, at 6,187,369 to 6,188,109
_28385
AO353_28390: AO353_28390 - hypothetical protein, at 6,188,452 to 6,188,640
_28390
AO353_28395: AO353_28395 - haloacid dehalogenase, at 6,189,258 to 6,189,911
_28395
Position (kb)
6188
6189 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 6187.499 kb on + strand, within AO353_28385 at 6187.588 kb on + strand, within AO353_28385 at 6187.588 kb on + strand, within AO353_28385 at 6187.589 kb on - strand, within AO353_28385 at 6187.625 kb on + strand, within AO353_28385 at 6187.726 kb on + strand, within AO353_28385 at 6187.726 kb on + strand, within AO353_28385 at 6187.840 kb on + strand, within AO353_28385 at 6187.840 kb on + strand, within AO353_28385 at 6187.841 kb on - strand, within AO353_28385 at 6187.882 kb on + strand, within AO353_28385 at 6187.882 kb on + strand, within AO353_28385 at 6187.883 kb on - strand, within AO353_28385 at 6187.905 kb on + strand, within AO353_28385 at 6188.009 kb on - strand, within AO353_28385 at 6188.047 kb on + strand at 6188.178 kb on + strand at 6188.178 kb on + strand at 6188.178 kb on + strand at 6188.178 kb on + strand at 6188.178 kb on + strand at 6188.179 kb on - strand at 6188.179 kb on - strand at 6188.186 kb on + strand at 6188.187 kb on - strand at 6188.201 kb on + strand at 6188.202 kb on - strand at 6188.248 kb on + strand at 6188.249 kb on - strand at 6188.249 kb on - strand at 6188.249 kb on - strand at 6188.249 kb on - strand at 6188.251 kb on + strand at 6188.252 kb on - strand at 6188.303 kb on + strand at 6188.304 kb on - strand at 6188.304 kb on - strand at 6188.304 kb on - strand at 6188.304 kb on - strand at 6188.304 kb on - strand at 6188.307 kb on + strand at 6188.307 kb on + strand at 6188.308 kb on - strand at 6188.308 kb on - strand at 6188.308 kb on - strand at 6188.393 kb on + strand at 6188.393 kb on + strand at 6188.410 kb on + strand at 6188.443 kb on - strand at 6188.443 kb on - strand at 6188.454 kb on - strand at 6188.454 kb on - strand at 6188.457 kb on + strand at 6188.457 kb on + strand at 6188.457 kb on + strand at 6188.457 kb on + strand at 6188.457 kb on + strand at 6188.457 kb on + strand at 6188.457 kb on + strand at 6188.458 kb on - strand at 6188.458 kb on - strand at 6188.458 kb on - strand at 6188.458 kb on - strand at 6188.458 kb on - strand at 6188.460 kb on + strand at 6188.469 kb on + strand at 6188.469 kb on + strand at 6188.469 kb on + strand at 6188.470 kb on - strand at 6188.472 kb on + strand, within AO353_28390 at 6188.473 kb on - strand, within AO353_28390 at 6188.473 kb on - strand, within AO353_28390 at 6188.570 kb on - strand, within AO353_28390 at 6188.570 kb on - strand, within AO353_28390 at 6188.599 kb on + strand, within AO353_28390 at 6188.600 kb on - strand, within AO353_28390 at 6188.600 kb on - strand, within AO353_28390 at 6188.835 kb on + strand at 6188.835 kb on + strand at 6188.835 kb on + strand at 6188.835 kb on + strand at 6188.836 kb on - strand at 6188.836 kb on - strand at 6188.927 kb on + strand at 6188.928 kb on - strand at 6188.928 kb on - strand at 6188.928 kb on - strand at 6188.928 kb on - strand at 6188.928 kb on - strand at 6188.943 kb on + strand at 6188.943 kb on + strand at 6188.943 kb on + strand at 6188.943 kb on + strand at 6188.944 kb on - strand at 6188.944 kb on - strand at 6188.944 kb on - strand at 6188.952 kb on - strand at 6188.952 kb on - strand at 6188.952 kb on - strand at 6188.952 kb on - strand at 6188.952 kb on - strand at 6188.983 kb on + strand at 6188.983 kb on + strand at 6188.983 kb on + strand at 6188.983 kb on + strand at 6188.983 kb on + strand at 6188.983 kb on + strand at 6188.983 kb on + strand at 6188.984 kb on - strand at 6188.984 kb on - strand at 6188.984 kb on - strand at 6188.984 kb on - strand at 6188.984 kb on - strand at 6188.987 kb on + strand at 6188.987 kb on + strand at 6188.987 kb on + strand at 6188.987 kb on + strand at 6188.988 kb on - strand at 6188.988 kb on - strand at 6188.988 kb on - strand at 6188.988 kb on - strand at 6189.010 kb on + strand at 6189.011 kb on - strand at 6189.011 kb on - strand at 6189.045 kb on + strand at 6189.046 kb on - strand at 6189.054 kb on - strand at 6189.054 kb on - strand at 6189.089 kb on + strand at 6189.089 kb on + strand at 6189.089 kb on + strand at 6189.119 kb on - strand at 6189.183 kb on + strand at 6189.231 kb on + strand at 6189.231 kb on + strand at 6189.231 kb on + strand at 6189.231 kb on + strand at 6189.231 kb on + strand at 6189.232 kb on - strand at 6189.232 kb on - strand at 6189.255 kb on + strand at 6189.255 kb on + strand at 6189.255 kb on + strand at 6189.255 kb on + strand at 6189.255 kb on + strand at 6189.255 kb on + strand at 6189.255 kb on + strand at 6189.256 kb on - strand at 6189.256 kb on - strand at 6189.256 kb on - strand at 6189.256 kb on - strand at 6189.256 kb on - strand at 6189.256 kb on - strand at 6189.256 kb on - strand at 6189.256 kb on - strand at 6189.256 kb on - strand at 6189.265 kb on - strand at 6189.320 kb on + strand at 6189.321 kb on - strand at 6189.321 kb on - strand at 6189.323 kb on + strand at 6189.323 kb on + strand at 6189.323 kb on + strand at 6189.323 kb on + strand at 6189.323 kb on + strand at 6189.323 kb on + strand at 6189.457 kb on + strand at 6189.471 kb on - strand, within AO353_28395 at 6189.578 kb on + strand, within AO353_28395 at 6189.578 kb on + strand, within AO353_28395 at 6189.579 kb on - strand, within AO353_28395 at 6189.626 kb on + strand, within AO353_28395 at 6189.626 kb on + strand, within AO353_28395 at 6189.626 kb on + strand, within AO353_28395 at 6189.626 kb on + strand, within AO353_28395 at 6189.627 kb on - strand, within AO353_28395 at 6189.627 kb on - strand, within AO353_28395 at 6189.627 kb on - strand, within AO353_28395
Per-strain Table
Position Strand Gene LocusTag Fraction L-Aspartic Acid (C) remove 6,187,499 + AO353_28385 0.18 +0.3 6,187,588 + AO353_28385 0.30 -0.0 6,187,588 + AO353_28385 0.30 +1.1 6,187,589 - AO353_28385 0.30 -0.9 6,187,625 + AO353_28385 0.35 +1.1 6,187,726 + AO353_28385 0.48 -0.9 6,187,726 + AO353_28385 0.48 +0.2 6,187,840 + AO353_28385 0.64 +0.8 6,187,840 + AO353_28385 0.64 +0.5 6,187,841 - AO353_28385 0.64 +0.1 6,187,882 + AO353_28385 0.69 -0.2 6,187,882 + AO353_28385 0.69 -0.5 6,187,883 - AO353_28385 0.69 -0.9 6,187,905 + AO353_28385 0.72 +1.5 6,188,009 - AO353_28385 0.86 +0.1 6,188,047 + -0.0 6,188,178 + -0.9 6,188,178 + -1.6 6,188,178 + +0.8 6,188,178 + +1.2 6,188,178 + +0.9 6,188,179 - +0.4 6,188,179 - -0.6 6,188,186 + +0.1 6,188,187 - +0.6 6,188,201 + -1.9 6,188,202 - -0.1 6,188,248 + -0.9 6,188,249 - -1.1 6,188,249 - -0.1 6,188,249 - -0.5 6,188,249 - -0.8 6,188,251 + +0.3 6,188,252 - +0.3 6,188,303 + -0.6 6,188,304 - -1.5 6,188,304 - -2.4 6,188,304 - -1.4 6,188,304 - -1.1 6,188,304 - -0.9 6,188,307 + +1.1 6,188,307 + +0.6 6,188,308 - +0.6 6,188,308 - +0.3 6,188,308 - -0.4 6,188,393 + +0.2 6,188,393 + +0.8 6,188,410 + -0.7 6,188,443 - -1.9 6,188,443 - +0.6 6,188,454 - +0.2 6,188,454 - +0.2 6,188,457 + -1.3 6,188,457 + -0.2 6,188,457 + +0.6 6,188,457 + -1.6 6,188,457 + -1.5 6,188,457 + +3.2 6,188,457 + -1.2 6,188,458 - -0.2 6,188,458 - +0.6 6,188,458 - -0.9 6,188,458 - +2.6 6,188,458 - +1.4 6,188,460 + -0.1 6,188,469 + +1.3 6,188,469 + +0.6 6,188,469 + +0.9 6,188,470 - -1.0 6,188,472 + AO353_28390 0.11 +0.1 6,188,473 - AO353_28390 0.11 +0.1 6,188,473 - AO353_28390 0.11 -0.5 6,188,570 - AO353_28390 0.62 +0.7 6,188,570 - AO353_28390 0.62 +0.3 6,188,599 + AO353_28390 0.78 -0.1 6,188,600 - AO353_28390 0.78 +0.2 6,188,600 - AO353_28390 0.78 +0.3 6,188,835 + -0.9 6,188,835 + +0.2 6,188,835 + +1.6 6,188,835 + -2.1 6,188,836 - -0.6 6,188,836 - -1.2 6,188,927 + +1.6 6,188,928 - -1.8 6,188,928 - -2.0 6,188,928 - +0.6 6,188,928 - +0.9 6,188,928 - -0.2 6,188,943 + +0.3 6,188,943 + -0.7 6,188,943 + -1.2 6,188,943 + -0.7 6,188,944 - +0.2 6,188,944 - +0.2 6,188,944 - +0.6 6,188,952 - +1.6 6,188,952 - -0.8 6,188,952 - +0.3 6,188,952 - -0.4 6,188,952 - -1.5 6,188,983 + +0.1 6,188,983 + +0.4 6,188,983 + -2.1 6,188,983 + +1.0 6,188,983 + +0.6 6,188,983 + -1.9 6,188,983 + -1.4 6,188,984 - +0.4 6,188,984 - +0.2 6,188,984 - -0.9 6,188,984 - +0.3 6,188,984 - +0.6 6,188,987 + -0.6 6,188,987 + -1.3 6,188,987 + +0.1 6,188,987 + +0.6 6,188,988 - -0.6 6,188,988 - -0.4 6,188,988 - +0.1 6,188,988 - -0.5 6,189,010 + -0.7 6,189,011 - -1.2 6,189,011 - -0.5 6,189,045 + +2.6 6,189,046 - -0.4 6,189,054 - +0.5 6,189,054 - -0.0 6,189,089 + +0.6 6,189,089 + -1.4 6,189,089 + -0.4 6,189,119 - +1.1 6,189,183 + -1.8 6,189,231 + -1.2 6,189,231 + +0.4 6,189,231 + -2.4 6,189,231 + -1.2 6,189,231 + +1.1 6,189,232 - -1.2 6,189,232 - -0.7 6,189,255 + -0.2 6,189,255 + -0.7 6,189,255 + +0.1 6,189,255 + +0.0 6,189,255 + +0.6 6,189,255 + +0.2 6,189,255 + -0.1 6,189,256 - +0.9 6,189,256 - +1.6 6,189,256 - +1.2 6,189,256 - +1.6 6,189,256 - -0.9 6,189,256 - -0.7 6,189,256 - +0.6 6,189,256 - +2.2 6,189,256 - -0.2 6,189,265 - -2.2 6,189,320 + +0.4 6,189,321 - -0.7 6,189,321 - -0.2 6,189,323 + +0.6 6,189,323 + -1.6 6,189,323 + +1.3 6,189,323 + -0.5 6,189,323 + -1.1 6,189,323 + +0.3 6,189,457 + +1.6 6,189,471 - AO353_28395 0.33 -0.7 6,189,578 + AO353_28395 0.49 -1.0 6,189,578 + AO353_28395 0.49 -1.7 6,189,579 - AO353_28395 0.49 -0.1 6,189,626 + AO353_28395 0.56 +0.1 6,189,626 + AO353_28395 0.56 +0.2 6,189,626 + AO353_28395 0.56 +0.6 6,189,626 + AO353_28395 0.56 -0.4 6,189,627 - AO353_28395 0.56 +0.3 6,189,627 - AO353_28395 0.56 +0.4 6,189,627 - AO353_28395 0.56 -1.2
Or see this region's nucleotide sequence