Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_27415

Experiment: L-Aspartic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_27415 and AO353_27420 are separated by 10 nucleotidesAO353_27420 and AO353_27425 are separated by 158 nucleotidesAO353_27425 and AO353_27430 are separated by 59 nucleotides AO353_27415: AO353_27415 - hypothetical protein, at 5,988,726 to 5,989,316 _27415 AO353_27420: AO353_27420 - DNA-binding protein, at 5,989,327 to 5,989,608 _27420 AO353_27425: AO353_27425 - transcriptional regulator, at 5,989,767 to 5,990,084 _27425 AO353_27430: AO353_27430 - hypothetical protein, at 5,990,144 to 5,990,563 _27430 Position (kb) 5988 5989 5990Strain fitness (log2 ratio) -2 -1 0 1 2at 5987.740 kb on - strandat 5987.740 kb on - strandat 5987.751 kb on + strandat 5987.800 kb on + strandat 5987.801 kb on - strandat 5987.809 kb on + strandat 5987.933 kb on - strandat 5988.073 kb on - strandat 5988.331 kb on - strandat 5988.410 kb on - strandat 5988.550 kb on - strandat 5988.719 kb on - strandat 5988.798 kb on - strand, within AO353_27415at 5988.798 kb on - strand, within AO353_27415at 5988.882 kb on - strand, within AO353_27415at 5989.182 kb on - strand, within AO353_27415at 5989.182 kb on - strand, within AO353_27415at 5989.454 kb on - strand, within AO353_27420at 5989.454 kb on - strand, within AO353_27420at 5989.454 kb on - strand, within AO353_27420at 5989.481 kb on - strand, within AO353_27420at 5989.505 kb on - strand, within AO353_27420at 5989.505 kb on - strand, within AO353_27420at 5989.524 kb on - strand, within AO353_27420at 5989.572 kb on - strand, within AO353_27420at 5989.572 kb on - strand, within AO353_27420at 5989.572 kb on - strand, within AO353_27420at 5989.572 kb on - strand, within AO353_27420at 5989.614 kb on - strandat 5989.614 kb on - strandat 5989.614 kb on - strandat 5989.760 kb on + strandat 5989.760 kb on + strandat 5989.761 kb on - strandat 5989.761 kb on - strandat 5989.855 kb on + strand, within AO353_27425at 5989.855 kb on + strand, within AO353_27425at 5989.856 kb on - strand, within AO353_27425at 5989.856 kb on - strand, within AO353_27425at 5989.856 kb on - strand, within AO353_27425at 5989.856 kb on - strand, within AO353_27425at 5989.856 kb on - strand, within AO353_27425at 5989.887 kb on + strand, within AO353_27425at 5989.887 kb on + strand, within AO353_27425at 5989.888 kb on - strand, within AO353_27425at 5989.888 kb on - strand, within AO353_27425at 5989.888 kb on - strand, within AO353_27425at 5989.888 kb on - strand, within AO353_27425at 5989.888 kb on - strand, within AO353_27425at 5989.989 kb on + strand, within AO353_27425at 5989.990 kb on - strand, within AO353_27425at 5990.034 kb on + strand, within AO353_27425at 5990.034 kb on + strand, within AO353_27425at 5990.035 kb on - strand, within AO353_27425at 5990.035 kb on - strand, within AO353_27425at 5990.035 kb on - strand, within AO353_27425at 5990.082 kb on + strandat 5990.083 kb on - strandat 5990.083 kb on - strandat 5990.083 kb on - strandat 5990.296 kb on + strand, within AO353_27430at 5990.296 kb on + strand, within AO353_27430at 5990.296 kb on + strand, within AO353_27430at 5990.297 kb on - strand, within AO353_27430at 5990.307 kb on + strand, within AO353_27430at 5990.308 kb on - strand, within AO353_27430at 5990.308 kb on - strand, within AO353_27430at 5990.308 kb on - strand, within AO353_27430

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
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5,987,740 - -0.0
5,987,740 - -0.6
5,987,751 + +0.9
5,987,800 + +0.6
5,987,801 - -1.3
5,987,809 + +1.6
5,987,933 - -0.3
5,988,073 - -0.4
5,988,331 - -0.8
5,988,410 - -0.9
5,988,550 - -0.8
5,988,719 - -0.0
5,988,798 - AO353_27415 0.12 -1.2
5,988,798 - AO353_27415 0.12 -0.0
5,988,882 - AO353_27415 0.26 -1.4
5,989,182 - AO353_27415 0.77 +0.6
5,989,182 - AO353_27415 0.77 -2.3
5,989,454 - AO353_27420 0.45 -0.4
5,989,454 - AO353_27420 0.45 -1.2
5,989,454 - AO353_27420 0.45 +0.1
5,989,481 - AO353_27420 0.55 -0.4
5,989,505 - AO353_27420 0.63 -0.4
5,989,505 - AO353_27420 0.63 -1.8
5,989,524 - AO353_27420 0.70 -0.3
5,989,572 - AO353_27420 0.87 -2.0
5,989,572 - AO353_27420 0.87 -1.4
5,989,572 - AO353_27420 0.87 -0.4
5,989,572 - AO353_27420 0.87 -0.7
5,989,614 - -0.0
5,989,614 - -1.2
5,989,614 - -0.4
5,989,760 + +0.1
5,989,760 + +1.1
5,989,761 - -2.0
5,989,761 - +0.2
5,989,855 + AO353_27425 0.28 +1.1
5,989,855 + AO353_27425 0.28 -1.6
5,989,856 - AO353_27425 0.28 +1.3
5,989,856 - AO353_27425 0.28 +0.2
5,989,856 - AO353_27425 0.28 +0.6
5,989,856 - AO353_27425 0.28 +0.1
5,989,856 - AO353_27425 0.28 -0.9
5,989,887 + AO353_27425 0.38 +1.8
5,989,887 + AO353_27425 0.38 -0.6
5,989,888 - AO353_27425 0.38 -1.2
5,989,888 - AO353_27425 0.38 +1.0
5,989,888 - AO353_27425 0.38 -0.2
5,989,888 - AO353_27425 0.38 -1.4
5,989,888 - AO353_27425 0.38 +1.6
5,989,989 + AO353_27425 0.70 +0.2
5,989,990 - AO353_27425 0.70 -0.0
5,990,034 + AO353_27425 0.84 +1.1
5,990,034 + AO353_27425 0.84 -0.1
5,990,035 - AO353_27425 0.84 +0.3
5,990,035 - AO353_27425 0.84 -0.0
5,990,035 - AO353_27425 0.84 -0.8
5,990,082 + -0.2
5,990,083 - +1.0
5,990,083 - -0.0
5,990,083 - -0.9
5,990,296 + AO353_27430 0.36 -1.1
5,990,296 + AO353_27430 0.36 +1.6
5,990,296 + AO353_27430 0.36 -0.4
5,990,297 - AO353_27430 0.36 -0.8
5,990,307 + AO353_27430 0.39 +0.4
5,990,308 - AO353_27430 0.39 -0.4
5,990,308 - AO353_27430 0.39 +1.1
5,990,308 - AO353_27430 0.39 +0.9

Or see this region's nucleotide sequence