Experiment: L-Aspartic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_26615 and AO353_26620 are separated by 38 nucleotides AO353_26620 and AO353_26625 are separated by 103 nucleotides AO353_26625 and AO353_26630 are separated by 195 nucleotides AO353_26630 and AO353_26635 are separated by 187 nucleotides
AO353_26615: AO353_26615 - pyridine nucleotide-disulfide oxidoreductase, at 5,828,080 to 5,829,324
_26615
AO353_26620: AO353_26620 - ArsR family transcriptional regulator, at 5,829,363 to 5,829,698
_26620
AO353_26625: AO353_26625 - MBL fold metallo-hydrolase, at 5,829,802 to 5,830,665
_26625
AO353_26630: AO353_26630 - ArsR family transcriptional regulator, at 5,830,861 to 5,831,349
_26630
AO353_26635: AO353_26635 - branched-chain alpha-ketoacid dehydrogenase, E1 component alpha subunit (EC 1.2.4.4) <small>(from data)</small>, at 5,831,537 to 5,832,772
_26635
Position (kb) 5829
5830
5831 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5828.891 kb on + strand, within AO353_26615 at 5828.891 kb on + strand, within AO353_26615 at 5828.892 kb on - strand, within AO353_26615 at 5828.892 kb on - strand, within AO353_26615 at 5828.912 kb on + strand, within AO353_26615 at 5828.912 kb on + strand, within AO353_26615 at 5828.912 kb on + strand, within AO353_26615 at 5828.912 kb on + strand, within AO353_26615 at 5828.913 kb on - strand, within AO353_26615 at 5828.913 kb on - strand, within AO353_26615 at 5828.913 kb on - strand, within AO353_26615 at 5828.913 kb on - strand, within AO353_26615 at 5828.913 kb on - strand, within AO353_26615 at 5828.913 kb on - strand, within AO353_26615 at 5828.913 kb on - strand, within AO353_26615 at 5829.121 kb on + strand, within AO353_26615 at 5829.122 kb on - strand, within AO353_26615 at 5829.122 kb on - strand, within AO353_26615 at 5829.176 kb on + strand, within AO353_26615 at 5829.176 kb on + strand, within AO353_26615 at 5829.177 kb on - strand, within AO353_26615 at 5829.179 kb on + strand, within AO353_26615 at 5829.179 kb on + strand, within AO353_26615 at 5829.179 kb on + strand, within AO353_26615 at 5829.179 kb on + strand, within AO353_26615 at 5829.179 kb on + strand, within AO353_26615 at 5829.180 kb on - strand, within AO353_26615 at 5829.180 kb on - strand, within AO353_26615 at 5829.180 kb on - strand, within AO353_26615 at 5829.180 kb on - strand, within AO353_26615 at 5829.275 kb on - strand at 5829.324 kb on + strand at 5829.324 kb on + strand at 5829.324 kb on + strand at 5829.324 kb on + strand at 5829.325 kb on - strand at 5829.325 kb on - strand at 5829.325 kb on - strand at 5829.325 kb on - strand at 5829.325 kb on - strand at 5829.325 kb on - strand at 5829.329 kb on + strand at 5829.329 kb on + strand at 5829.329 kb on + strand at 5829.330 kb on - strand at 5829.330 kb on - strand at 5829.338 kb on + strand at 5829.338 kb on + strand at 5829.339 kb on - strand at 5829.339 kb on - strand at 5829.379 kb on - strand at 5829.379 kb on - strand at 5829.394 kb on + strand at 5829.395 kb on - strand at 5829.395 kb on - strand at 5829.448 kb on + strand, within AO353_26620 at 5829.449 kb on - strand, within AO353_26620 at 5829.458 kb on - strand, within AO353_26620 at 5829.458 kb on - strand, within AO353_26620 at 5829.618 kb on + strand, within AO353_26620 at 5829.684 kb on + strand at 5829.706 kb on + strand at 5829.706 kb on + strand at 5829.706 kb on + strand at 5829.707 kb on - strand at 5829.707 kb on - strand at 5829.724 kb on - strand at 5829.737 kb on + strand at 5829.767 kb on + strand at 5829.767 kb on + strand at 5829.768 kb on - strand at 5829.768 kb on - strand at 5829.768 kb on - strand at 5829.768 kb on - strand at 5829.768 kb on - strand at 5829.847 kb on + strand at 5829.847 kb on + strand at 5829.847 kb on + strand at 5829.847 kb on + strand at 5829.847 kb on + strand at 5829.847 kb on + strand at 5829.847 kb on + strand at 5829.847 kb on + strand at 5829.848 kb on - strand at 5829.848 kb on - strand at 5829.848 kb on - strand at 5829.848 kb on - strand at 5829.848 kb on - strand at 5829.848 kb on - strand at 5829.848 kb on - strand at 5829.848 kb on - strand at 5829.848 kb on - strand at 5829.848 kb on - strand at 5829.853 kb on + strand at 5829.853 kb on + strand at 5829.853 kb on + strand at 5829.853 kb on + strand at 5829.853 kb on + strand at 5829.853 kb on + strand at 5829.853 kb on + strand at 5829.853 kb on + strand at 5829.853 kb on + strand at 5829.853 kb on + strand at 5829.853 kb on + strand at 5829.853 kb on + strand at 5829.853 kb on + strand at 5829.853 kb on + strand at 5829.853 kb on + strand at 5829.853 kb on + strand at 5829.854 kb on - strand at 5829.854 kb on - strand at 5829.854 kb on - strand at 5829.854 kb on - strand at 5829.854 kb on - strand at 5829.854 kb on - strand at 5829.854 kb on - strand at 5829.854 kb on - strand at 5829.854 kb on - strand at 5829.854 kb on - strand at 5829.854 kb on - strand at 5829.854 kb on - strand at 5829.854 kb on - strand at 5829.854 kb on - strand at 5829.854 kb on - strand at 5829.862 kb on + strand at 5829.862 kb on + strand at 5829.862 kb on + strand at 5829.862 kb on + strand at 5829.862 kb on + strand at 5829.862 kb on + strand at 5829.862 kb on + strand at 5829.862 kb on + strand at 5829.862 kb on + strand at 5829.862 kb on + strand at 5829.862 kb on + strand at 5829.863 kb on - strand at 5829.863 kb on - strand at 5829.863 kb on - strand at 5829.863 kb on - strand at 5829.863 kb on - strand at 5829.863 kb on - strand at 5829.863 kb on - strand at 5829.863 kb on - strand at 5829.863 kb on - strand at 5829.863 kb on - strand at 5829.910 kb on + strand, within AO353_26625 at 5830.042 kb on + strand, within AO353_26625 at 5830.255 kb on + strand, within AO353_26625 at 5830.255 kb on + strand, within AO353_26625 at 5830.256 kb on - strand, within AO353_26625 at 5830.356 kb on - strand, within AO353_26625 at 5830.356 kb on - strand, within AO353_26625 at 5830.356 kb on - strand, within AO353_26625 at 5830.356 kb on - strand, within AO353_26625 at 5830.356 kb on - strand, within AO353_26625 at 5830.405 kb on + strand, within AO353_26625 at 5830.405 kb on + strand, within AO353_26625 at 5830.405 kb on + strand, within AO353_26625 at 5830.405 kb on + strand, within AO353_26625 at 5830.405 kb on + strand, within AO353_26625 at 5830.405 kb on + strand, within AO353_26625 at 5830.405 kb on + strand, within AO353_26625 at 5830.483 kb on - strand, within AO353_26625 at 5830.483 kb on - strand, within AO353_26625 at 5830.483 kb on - strand, within AO353_26625 at 5830.568 kb on + strand, within AO353_26625 at 5830.692 kb on + strand at 5830.692 kb on + strand at 5830.692 kb on + strand at 5830.692 kb on + strand at 5830.693 kb on - strand at 5830.693 kb on - strand at 5830.693 kb on - strand at 5830.700 kb on - strand at 5830.700 kb on - strand at 5830.781 kb on + strand at 5830.794 kb on - strand at 5830.847 kb on + strand at 5830.847 kb on + strand at 5830.847 kb on + strand at 5830.848 kb on - strand at 5830.848 kb on - strand at 5830.848 kb on - strand at 5830.848 kb on - strand at 5830.848 kb on - strand at 5830.911 kb on - strand, within AO353_26630 at 5831.030 kb on + strand, within AO353_26630 at 5831.030 kb on + strand, within AO353_26630 at 5831.031 kb on - strand, within AO353_26630 at 5831.031 kb on - strand, within AO353_26630 at 5831.031 kb on - strand, within AO353_26630 at 5831.031 kb on - strand, within AO353_26630 at 5831.054 kb on + strand, within AO353_26630 at 5831.054 kb on + strand, within AO353_26630 at 5831.065 kb on + strand, within AO353_26630 at 5831.065 kb on + strand, within AO353_26630 at 5831.066 kb on - strand, within AO353_26630 at 5831.187 kb on + strand, within AO353_26630 at 5831.187 kb on + strand, within AO353_26630 at 5831.188 kb on - strand, within AO353_26630 at 5831.188 kb on - strand, within AO353_26630 at 5831.188 kb on - strand, within AO353_26630 at 5831.209 kb on + strand, within AO353_26630 at 5831.378 kb on - strand at 5831.430 kb on + strand at 5831.449 kb on + strand at 5831.449 kb on + strand at 5831.460 kb on + strand at 5831.460 kb on + strand at 5831.461 kb on - strand at 5831.503 kb on + strand at 5831.503 kb on + strand at 5831.503 kb on + strand at 5831.503 kb on + strand at 5831.504 kb on - strand at 5831.528 kb on + strand at 5831.528 kb on + strand at 5831.529 kb on - strand at 5831.529 kb on - strand at 5831.549 kb on + strand at 5831.549 kb on + strand at 5831.615 kb on + strand at 5831.615 kb on + strand at 5831.616 kb on - strand at 5831.664 kb on + strand, within AO353_26635 at 5831.665 kb on - strand, within AO353_26635 at 5831.665 kb on - strand, within AO353_26635
Per-strain Table
Position Strand Gene LocusTag Fraction L-Aspartic Acid (C) remove 5,828,891 + AO353_26615 0.65 -0.4 5,828,891 + AO353_26615 0.65 -2.1 5,828,892 - AO353_26615 0.65 -0.2 5,828,892 - AO353_26615 0.65 +0.3 5,828,912 + AO353_26615 0.67 -1.1 5,828,912 + AO353_26615 0.67 +0.9 5,828,912 + AO353_26615 0.67 -1.4 5,828,912 + AO353_26615 0.67 -0.8 5,828,913 - AO353_26615 0.67 -0.8 5,828,913 - AO353_26615 0.67 +0.5 5,828,913 - AO353_26615 0.67 -0.3 5,828,913 - AO353_26615 0.67 +0.2 5,828,913 - AO353_26615 0.67 -0.7 5,828,913 - AO353_26615 0.67 +0.8 5,828,913 - AO353_26615 0.67 +0.8 5,829,121 + AO353_26615 0.84 +0.9 5,829,122 - AO353_26615 0.84 -0.5 5,829,122 - AO353_26615 0.84 -2.0 5,829,176 + AO353_26615 0.88 -1.2 5,829,176 + AO353_26615 0.88 -1.8 5,829,177 - AO353_26615 0.88 -1.4 5,829,179 + AO353_26615 0.88 -0.5 5,829,179 + AO353_26615 0.88 -0.7 5,829,179 + AO353_26615 0.88 -1.5 5,829,179 + AO353_26615 0.88 -0.2 5,829,179 + AO353_26615 0.88 -0.7 5,829,180 - AO353_26615 0.88 -1.3 5,829,180 - AO353_26615 0.88 -0.6 5,829,180 - AO353_26615 0.88 -0.0 5,829,180 - AO353_26615 0.88 -1.3 5,829,275 - -0.5 5,829,324 + -0.7 5,829,324 + -0.3 5,829,324 + -1.9 5,829,324 + -1.0 5,829,325 - -0.6 5,829,325 - -0.5 5,829,325 - -1.1 5,829,325 - +0.9 5,829,325 - +0.1 5,829,325 - -0.5 5,829,329 + -1.3 5,829,329 + -1.1 5,829,329 + +1.5 5,829,330 - -0.7 5,829,330 - -0.7 5,829,338 + -0.1 5,829,338 + +0.2 5,829,339 - -0.8 5,829,339 - +0.9 5,829,379 - -1.3 5,829,379 - -0.2 5,829,394 + +1.2 5,829,395 - +0.2 5,829,395 - +0.2 5,829,448 + AO353_26620 0.25 -0.1 5,829,449 - AO353_26620 0.26 -3.2 5,829,458 - AO353_26620 0.28 -0.9 5,829,458 - AO353_26620 0.28 -0.2 5,829,618 + AO353_26620 0.76 -1.0 5,829,684 + +0.7 5,829,706 + -0.8 5,829,706 + +0.6 5,829,706 + +0.1 5,829,707 - +1.9 5,829,707 - -0.7 5,829,724 - -0.4 5,829,737 + +0.7 5,829,767 + -1.9 5,829,767 + -0.8 5,829,768 - +0.7 5,829,768 - +0.5 5,829,768 - -1.1 5,829,768 - -0.2 5,829,768 - +0.5 5,829,847 + -0.8 5,829,847 + +0.5 5,829,847 + -0.7 5,829,847 + +0.2 5,829,847 + +0.7 5,829,847 + +0.8 5,829,847 + +0.4 5,829,847 + -0.2 5,829,848 - -1.2 5,829,848 - +0.4 5,829,848 - +0.1 5,829,848 - -0.1 5,829,848 - -0.3 5,829,848 - +0.6 5,829,848 - +0.9 5,829,848 - -0.3 5,829,848 - +0.5 5,829,848 - -2.3 5,829,853 + -0.1 5,829,853 + -0.5 5,829,853 + +0.3 5,829,853 + -1.2 5,829,853 + -0.5 5,829,853 + -0.7 5,829,853 + -0.1 5,829,853 + +0.7 5,829,853 + -0.8 5,829,853 + -0.2 5,829,853 + -1.1 5,829,853 + -0.1 5,829,853 + +0.1 5,829,853 + -0.3 5,829,853 + -0.8 5,829,853 + +1.2 5,829,854 - -0.1 5,829,854 - -0.5 5,829,854 - -0.1 5,829,854 - -0.1 5,829,854 - +0.1 5,829,854 - -0.2 5,829,854 - +0.9 5,829,854 - +0.5 5,829,854 - -1.0 5,829,854 - -1.8 5,829,854 - -0.5 5,829,854 - +0.8 5,829,854 - +0.1 5,829,854 - -1.1 5,829,854 - +0.3 5,829,862 + -0.7 5,829,862 + +0.1 5,829,862 + -0.3 5,829,862 + +1.3 5,829,862 + +0.1 5,829,862 + -2.7 5,829,862 + +0.9 5,829,862 + -2.5 5,829,862 + -0.2 5,829,862 + -1.0 5,829,862 + +0.3 5,829,863 - +0.9 5,829,863 - -0.2 5,829,863 - -0.1 5,829,863 - +0.0 5,829,863 - +1.1 5,829,863 - -0.8 5,829,863 - -1.6 5,829,863 - -0.1 5,829,863 - -0.7 5,829,863 - +0.6 5,829,910 + AO353_26625 0.12 -0.5 5,830,042 + AO353_26625 0.28 +0.5 5,830,255 + AO353_26625 0.52 +1.2 5,830,255 + AO353_26625 0.52 +1.1 5,830,256 - AO353_26625 0.53 +0.4 5,830,356 - AO353_26625 0.64 +1.5 5,830,356 - AO353_26625 0.64 +0.1 5,830,356 - AO353_26625 0.64 -0.9 5,830,356 - AO353_26625 0.64 -1.3 5,830,356 - AO353_26625 0.64 -0.8 5,830,405 + AO353_26625 0.70 -1.1 5,830,405 + AO353_26625 0.70 +1.5 5,830,405 + AO353_26625 0.70 +1.5 5,830,405 + AO353_26625 0.70 -0.1 5,830,405 + AO353_26625 0.70 +0.2 5,830,405 + AO353_26625 0.70 +1.0 5,830,405 + AO353_26625 0.70 +0.8 5,830,483 - AO353_26625 0.79 +0.3 5,830,483 - AO353_26625 0.79 -0.2 5,830,483 - AO353_26625 0.79 +1.2 5,830,568 + AO353_26625 0.89 -0.7 5,830,692 + -0.5 5,830,692 + +0.1 5,830,692 + +0.5 5,830,692 + -0.6 5,830,693 - -1.1 5,830,693 - +0.1 5,830,693 - -0.9 5,830,700 - -2.6 5,830,700 - -1.8 5,830,781 + -1.1 5,830,794 - -0.9 5,830,847 + +1.5 5,830,847 + -1.2 5,830,847 + +0.6 5,830,848 - -0.5 5,830,848 - +0.3 5,830,848 - -0.1 5,830,848 - +1.3 5,830,848 - -1.5 5,830,911 - AO353_26630 0.10 -0.5 5,831,030 + AO353_26630 0.35 +0.5 5,831,030 + AO353_26630 0.35 -0.5 5,831,031 - AO353_26630 0.35 -0.2 5,831,031 - AO353_26630 0.35 -1.3 5,831,031 - AO353_26630 0.35 +0.5 5,831,031 - AO353_26630 0.35 +0.7 5,831,054 + AO353_26630 0.39 +0.2 5,831,054 + AO353_26630 0.39 -0.6 5,831,065 + AO353_26630 0.42 +0.2 5,831,065 + AO353_26630 0.42 -1.3 5,831,066 - AO353_26630 0.42 +0.8 5,831,187 + AO353_26630 0.67 -1.7 5,831,187 + AO353_26630 0.67 +0.7 5,831,188 - AO353_26630 0.67 -1.8 5,831,188 - AO353_26630 0.67 +0.7 5,831,188 - AO353_26630 0.67 -0.2 5,831,209 + AO353_26630 0.71 -0.6 5,831,378 - -0.1 5,831,430 + -0.6 5,831,449 + -2.1 5,831,449 + -1.5 5,831,460 + -0.6 5,831,460 + -1.0 5,831,461 - -1.1 5,831,503 + -0.6 5,831,503 + +0.2 5,831,503 + -0.3 5,831,503 + -0.8 5,831,504 - +0.0 5,831,528 + +0.8 5,831,528 + +1.5 5,831,529 - -0.4 5,831,529 - -1.8 5,831,549 + +0.2 5,831,549 + -1.7 5,831,615 + -1.0 5,831,615 + -1.1 5,831,616 - +1.5 5,831,664 + AO353_26635 0.10 -0.3 5,831,665 - AO353_26635 0.10 +0.3 5,831,665 - AO353_26635 0.10 -1.8
Or see this region's nucleotide sequence