Experiment: L-Aspartic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_26380 and AO353_26385 are separated by 270 nucleotides AO353_26385 and AO353_26390 are separated by 164 nucleotides AO353_26390 and AO353_26395 are separated by 153 nucleotides AO353_26395 and AO353_26400 are separated by 5 nucleotides AO353_26400 and AO353_26405 overlap by 4 nucleotides AO353_26405 and AO353_26410 overlap by 4 nucleotides
AO353_26380: AO353_26380 - hypothetical protein, at 5,788,728 to 5,789,483
_26380
AO353_26385: AO353_26385 - hypothetical protein, at 5,789,754 to 5,790,092
_26385
AO353_26390: AO353_26390 - glyoxalase, at 5,790,257 to 5,790,616
_26390
AO353_26395: AO353_26395 - hypothetical protein, at 5,790,770 to 5,790,958
_26395
AO353_26400: AO353_26400 - hypothetical protein, at 5,790,964 to 5,791,197
_26400
AO353_26405: AO353_26405 - hypothetical protein, at 5,791,194 to 5,791,427
_26405
AO353_26410: AO353_26410 - hypothetical protein, at 5,791,424 to 5,791,624
_26410
Position (kb)
5790
5791 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 5789.273 kb on + strand, within AO353_26380 at 5789.273 kb on + strand, within AO353_26380 at 5789.273 kb on + strand, within AO353_26380 at 5789.310 kb on - strand, within AO353_26380 at 5789.310 kb on - strand, within AO353_26380 at 5789.310 kb on - strand, within AO353_26380 at 5789.333 kb on - strand, within AO353_26380 at 5789.333 kb on - strand, within AO353_26380 at 5789.334 kb on + strand, within AO353_26380 at 5789.334 kb on + strand, within AO353_26380 at 5789.335 kb on - strand, within AO353_26380 at 5789.467 kb on - strand at 5789.476 kb on - strand at 5789.530 kb on + strand at 5789.691 kb on + strand at 5789.691 kb on + strand at 5789.691 kb on + strand at 5789.691 kb on + strand at 5789.692 kb on - strand at 5789.692 kb on - strand at 5789.755 kb on + strand at 5789.755 kb on + strand at 5789.756 kb on - strand at 5789.756 kb on - strand at 5789.768 kb on - strand at 5789.780 kb on + strand at 5789.780 kb on + strand at 5789.780 kb on + strand at 5789.780 kb on + strand at 5789.780 kb on + strand at 5789.780 kb on + strand at 5789.780 kb on + strand at 5789.780 kb on + strand at 5789.780 kb on + strand at 5789.781 kb on - strand at 5789.781 kb on - strand at 5789.781 kb on - strand at 5789.781 kb on - strand at 5789.848 kb on + strand, within AO353_26385 at 5789.848 kb on + strand, within AO353_26385 at 5789.848 kb on + strand, within AO353_26385 at 5789.849 kb on - strand, within AO353_26385 at 5789.903 kb on + strand, within AO353_26385 at 5789.903 kb on + strand, within AO353_26385 at 5789.904 kb on - strand, within AO353_26385 at 5789.919 kb on - strand, within AO353_26385 at 5789.940 kb on + strand, within AO353_26385 at 5789.940 kb on + strand, within AO353_26385 at 5789.940 kb on + strand, within AO353_26385 at 5789.940 kb on + strand, within AO353_26385 at 5789.941 kb on - strand, within AO353_26385 at 5790.005 kb on + strand, within AO353_26385 at 5790.006 kb on - strand, within AO353_26385 at 5790.006 kb on - strand, within AO353_26385 at 5790.105 kb on - strand at 5790.105 kb on - strand at 5790.117 kb on - strand at 5790.117 kb on - strand at 5790.117 kb on - strand at 5790.120 kb on + strand at 5790.120 kb on + strand at 5790.120 kb on + strand at 5790.121 kb on - strand at 5790.121 kb on - strand at 5790.121 kb on - strand at 5790.121 kb on - strand at 5790.182 kb on + strand at 5790.182 kb on + strand at 5790.182 kb on + strand at 5790.182 kb on + strand at 5790.213 kb on - strand at 5790.277 kb on + strand at 5790.277 kb on + strand at 5790.277 kb on + strand at 5790.277 kb on + strand at 5790.293 kb on - strand, within AO353_26390 at 5790.470 kb on + strand, within AO353_26390 at 5790.471 kb on - strand, within AO353_26390 at 5790.478 kb on + strand, within AO353_26390 at 5790.552 kb on + strand, within AO353_26390 at 5790.585 kb on + strand at 5790.585 kb on + strand at 5790.586 kb on - strand at 5790.616 kb on + strand at 5790.617 kb on - strand at 5790.617 kb on - strand at 5790.656 kb on - strand at 5790.656 kb on - strand at 5790.658 kb on + strand at 5790.658 kb on + strand at 5790.658 kb on + strand at 5790.659 kb on - strand at 5790.659 kb on - strand at 5790.659 kb on - strand at 5790.659 kb on - strand at 5790.659 kb on - strand at 5790.664 kb on + strand at 5790.665 kb on - strand at 5790.665 kb on - strand at 5790.675 kb on + strand at 5790.675 kb on + strand at 5790.675 kb on + strand at 5790.675 kb on + strand at 5790.675 kb on + strand at 5790.675 kb on + strand at 5790.675 kb on + strand at 5790.675 kb on + strand at 5790.675 kb on + strand at 5790.676 kb on - strand at 5790.676 kb on - strand at 5790.676 kb on - strand at 5790.676 kb on - strand at 5790.676 kb on - strand at 5790.769 kb on + strand at 5790.769 kb on + strand at 5790.769 kb on + strand at 5790.769 kb on + strand at 5790.770 kb on - strand at 5790.770 kb on - strand at 5790.770 kb on - strand at 5790.770 kb on - strand at 5790.770 kb on - strand at 5790.770 kb on - strand at 5790.770 kb on - strand at 5790.771 kb on + strand at 5790.771 kb on + strand at 5790.771 kb on + strand at 5790.772 kb on - strand at 5790.772 kb on - strand at 5790.772 kb on - strand at 5790.772 kb on - strand at 5790.772 kb on - strand at 5790.772 kb on - strand at 5790.772 kb on - strand at 5790.772 kb on - strand at 5790.772 kb on - strand at 5790.772 kb on - strand at 5790.772 kb on - strand at 5790.956 kb on + strand at 5790.957 kb on - strand at 5790.957 kb on - strand at 5791.009 kb on - strand, within AO353_26400 at 5791.029 kb on + strand, within AO353_26400 at 5791.030 kb on - strand, within AO353_26400 at 5791.066 kb on + strand, within AO353_26400 at 5791.066 kb on + strand, within AO353_26400 at 5791.067 kb on - strand, within AO353_26400 at 5791.110 kb on - strand, within AO353_26400 at 5791.110 kb on - strand, within AO353_26400 at 5791.145 kb on + strand, within AO353_26400 at 5791.146 kb on - strand, within AO353_26400 at 5791.181 kb on + strand at 5791.315 kb on + strand, within AO353_26405 at 5791.315 kb on + strand, within AO353_26405 at 5791.383 kb on + strand, within AO353_26405 at 5791.383 kb on + strand, within AO353_26405 at 5791.384 kb on - strand, within AO353_26405 at 5791.384 kb on - strand, within AO353_26405 at 5791.384 kb on - strand, within AO353_26405 at 5791.384 kb on - strand, within AO353_26405 at 5791.392 kb on + strand, within AO353_26405 at 5791.392 kb on + strand, within AO353_26405 at 5791.392 kb on + strand, within AO353_26405 at 5791.392 kb on + strand, within AO353_26405 at 5791.392 kb on + strand, within AO353_26405 at 5791.392 kb on + strand, within AO353_26405 at 5791.393 kb on - strand, within AO353_26405 at 5791.393 kb on - strand, within AO353_26405 at 5791.393 kb on - strand, within AO353_26405 at 5791.429 kb on + strand at 5791.429 kb on + strand at 5791.429 kb on + strand at 5791.429 kb on + strand at 5791.429 kb on + strand at 5791.430 kb on - strand at 5791.430 kb on - strand at 5791.472 kb on - strand, within AO353_26410 at 5791.472 kb on - strand, within AO353_26410 at 5791.472 kb on - strand, within AO353_26410 at 5791.472 kb on - strand, within AO353_26410 at 5791.500 kb on - strand, within AO353_26410 at 5791.500 kb on - strand at 5791.500 kb on - strand, within AO353_26410 at 5791.500 kb on - strand, within AO353_26410 at 5791.548 kb on - strand, within AO353_26410 at 5791.548 kb on - strand, within AO353_26410 at 5791.548 kb on - strand, within AO353_26410 at 5791.548 kb on - strand, within AO353_26410 at 5791.548 kb on - strand, within AO353_26410 at 5791.578 kb on + strand, within AO353_26410 at 5791.579 kb on - strand, within AO353_26410 at 5791.579 kb on - strand, within AO353_26410 at 5791.579 kb on - strand, within AO353_26410
Per-strain Table
Position Strand Gene LocusTag Fraction L-Aspartic Acid (C) remove 5,789,273 + AO353_26380 0.72 +0.2 5,789,273 + AO353_26380 0.72 +0.5 5,789,273 + AO353_26380 0.72 +0.3 5,789,310 - AO353_26380 0.77 +0.5 5,789,310 - AO353_26380 0.77 +1.0 5,789,310 - AO353_26380 0.77 +0.2 5,789,333 - AO353_26380 0.80 -0.5 5,789,333 - AO353_26380 0.80 -2.2 5,789,334 + AO353_26380 0.80 -0.1 5,789,334 + AO353_26380 0.80 -0.6 5,789,335 - AO353_26380 0.80 +0.2 5,789,467 - +0.8 5,789,476 - +0.5 5,789,530 + +0.5 5,789,691 + -0.8 5,789,691 + +1.9 5,789,691 + -0.6 5,789,691 + -0.3 5,789,692 - -0.8 5,789,692 - -0.1 5,789,755 + -1.5 5,789,755 + -0.2 5,789,756 - +0.2 5,789,756 - +0.7 5,789,768 - -0.3 5,789,780 + -1.2 5,789,780 + -1.3 5,789,780 + -0.8 5,789,780 + -0.3 5,789,780 + +0.3 5,789,780 + -2.0 5,789,780 + +0.8 5,789,780 + -0.8 5,789,780 + +0.8 5,789,781 - -0.5 5,789,781 - -2.1 5,789,781 - -1.1 5,789,781 - -0.5 5,789,848 + AO353_26385 0.28 -2.0 5,789,848 + AO353_26385 0.28 -1.1 5,789,848 + AO353_26385 0.28 -2.1 5,789,849 - AO353_26385 0.28 -1.5 5,789,903 + AO353_26385 0.44 -0.5 5,789,903 + AO353_26385 0.44 +0.5 5,789,904 - AO353_26385 0.44 +1.5 5,789,919 - AO353_26385 0.49 +0.6 5,789,940 + AO353_26385 0.55 -0.3 5,789,940 + AO353_26385 0.55 -1.5 5,789,940 + AO353_26385 0.55 -0.1 5,789,940 + AO353_26385 0.55 -0.8 5,789,941 - AO353_26385 0.55 +0.3 5,790,005 + AO353_26385 0.74 -1.2 5,790,006 - AO353_26385 0.74 -1.1 5,790,006 - AO353_26385 0.74 +0.5 5,790,105 - -0.5 5,790,105 - -0.5 5,790,117 - +1.5 5,790,117 - +0.5 5,790,117 - -0.2 5,790,120 + -0.4 5,790,120 + +0.3 5,790,120 + -2.0 5,790,121 - -1.3 5,790,121 - +1.1 5,790,121 - +0.6 5,790,121 - +0.3 5,790,182 + +0.5 5,790,182 + -0.2 5,790,182 + -2.1 5,790,182 + -1.0 5,790,213 - -0.4 5,790,277 + +0.8 5,790,277 + -0.6 5,790,277 + +0.6 5,790,277 + -1.2 5,790,293 - AO353_26390 0.10 +0.3 5,790,470 + AO353_26390 0.59 +0.0 5,790,471 - AO353_26390 0.59 +1.1 5,790,478 + AO353_26390 0.61 +0.5 5,790,552 + AO353_26390 0.82 +1.2 5,790,585 + +0.2 5,790,585 + -1.1 5,790,586 - -0.5 5,790,616 + +1.5 5,790,617 - -0.2 5,790,617 - -0.2 5,790,656 - -0.5 5,790,656 - -2.1 5,790,658 + +1.1 5,790,658 + -0.1 5,790,658 + +0.5 5,790,659 - -0.2 5,790,659 - +0.9 5,790,659 - -1.0 5,790,659 - -0.2 5,790,659 - -0.2 5,790,664 + +0.3 5,790,665 - -0.6 5,790,665 - -0.1 5,790,675 + -0.0 5,790,675 + +2.1 5,790,675 + +2.2 5,790,675 + +0.7 5,790,675 + +1.5 5,790,675 + -0.4 5,790,675 + +1.5 5,790,675 + -0.1 5,790,675 + +0.7 5,790,676 - -0.5 5,790,676 - -1.8 5,790,676 - -0.5 5,790,676 - -1.1 5,790,676 - +0.2 5,790,769 + -0.4 5,790,769 + +0.2 5,790,769 + -0.3 5,790,769 + -1.1 5,790,770 - -0.8 5,790,770 - +0.2 5,790,770 - +0.0 5,790,770 - +1.5 5,790,770 - +0.5 5,790,770 - -1.8 5,790,770 - -0.1 5,790,771 + +0.2 5,790,771 + -0.1 5,790,771 + -1.1 5,790,772 - +0.2 5,790,772 - -0.7 5,790,772 - +0.7 5,790,772 - -1.3 5,790,772 - +1.2 5,790,772 - -0.9 5,790,772 - -1.3 5,790,772 - -0.5 5,790,772 - -1.8 5,790,772 - -0.4 5,790,772 - -0.7 5,790,956 + -2.1 5,790,957 - -0.6 5,790,957 - -0.0 5,791,009 - AO353_26400 0.19 -0.4 5,791,029 + AO353_26400 0.28 -0.0 5,791,030 - AO353_26400 0.28 -1.0 5,791,066 + AO353_26400 0.44 -0.7 5,791,066 + AO353_26400 0.44 +0.6 5,791,067 - AO353_26400 0.44 +0.2 5,791,110 - AO353_26400 0.62 +1.5 5,791,110 - AO353_26400 0.62 +0.8 5,791,145 + AO353_26400 0.77 +0.6 5,791,146 - AO353_26400 0.78 -0.4 5,791,181 + -0.1 5,791,315 + AO353_26405 0.52 +0.2 5,791,315 + AO353_26405 0.52 +0.5 5,791,383 + AO353_26405 0.81 -1.3 5,791,383 + AO353_26405 0.81 -0.8 5,791,384 - AO353_26405 0.81 +0.2 5,791,384 - AO353_26405 0.81 +1.5 5,791,384 - AO353_26405 0.81 +1.2 5,791,384 - AO353_26405 0.81 -1.5 5,791,392 + AO353_26405 0.85 -1.2 5,791,392 + AO353_26405 0.85 -0.3 5,791,392 + AO353_26405 0.85 -1.6 5,791,392 + AO353_26405 0.85 -0.3 5,791,392 + AO353_26405 0.85 +0.3 5,791,392 + AO353_26405 0.85 +0.2 5,791,393 - AO353_26405 0.85 +0.5 5,791,393 - AO353_26405 0.85 -0.2 5,791,393 - AO353_26405 0.85 -1.5 5,791,429 + -1.2 5,791,429 + -2.3 5,791,429 + -1.1 5,791,429 + +1.5 5,791,429 + -0.1 5,791,430 - -3.0 5,791,430 - -1.7 5,791,472 - AO353_26410 0.24 -0.1 5,791,472 - AO353_26410 0.24 +1.9 5,791,472 - AO353_26410 0.24 +0.5 5,791,472 - AO353_26410 0.24 -0.1 5,791,500 - AO353_26410 0.38 -0.9 5,791,500 - +2.5 5,791,500 - AO353_26410 0.38 -0.5 5,791,500 - AO353_26410 0.38 -0.1 5,791,548 - AO353_26410 0.62 -0.8 5,791,548 - AO353_26410 0.62 -0.6 5,791,548 - AO353_26410 0.62 -1.5 5,791,548 - AO353_26410 0.62 -1.1 5,791,548 - AO353_26410 0.62 -0.2 5,791,578 + AO353_26410 0.77 -0.8 5,791,579 - AO353_26410 0.77 +0.2 5,791,579 - AO353_26410 0.77 -0.1 5,791,579 - AO353_26410 0.77 +0.2
Or see this region's nucleotide sequence