Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_26125

Experiment: L-Aspartic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_26115 and AO353_26120 are separated by 27 nucleotidesAO353_26120 and AO353_26125 overlap by 1 nucleotidesAO353_26125 and AO353_26130 are separated by 8 nucleotides AO353_26115: AO353_26115 - hypothetical protein, at 5,748,266 to 5,748,658 _26115 AO353_26120: AO353_26120 - hypothetical protein, at 5,748,686 to 5,749,366 _26120 AO353_26125: AO353_26125 - hypothetical protein, at 5,749,366 to 5,749,677 _26125 AO353_26130: AO353_26130 - host specificity protein, at 5,749,686 to 5,753,243 _26130 Position (kb) 5749 5750Strain fitness (log2 ratio) -2 -1 0 1 2at 5748.851 kb on + strand, within AO353_26120at 5748.851 kb on + strand, within AO353_26120at 5748.851 kb on + strand, within AO353_26120at 5748.851 kb on + strand, within AO353_26120at 5748.851 kb on + strand, within AO353_26120at 5748.851 kb on + strand, within AO353_26120at 5748.851 kb on + strand, within AO353_26120at 5748.855 kb on + strand, within AO353_26120at 5748.855 kb on + strand, within AO353_26120at 5748.855 kb on + strand, within AO353_26120at 5748.855 kb on + strand, within AO353_26120at 5748.855 kb on + strand, within AO353_26120at 5748.889 kb on - strand, within AO353_26120at 5748.892 kb on - strand, within AO353_26120at 5748.892 kb on - strand, within AO353_26120at 5748.892 kb on - strand, within AO353_26120at 5748.892 kb on - strand, within AO353_26120at 5748.892 kb on - strand, within AO353_26120at 5748.892 kb on - strandat 5748.892 kb on - strand, within AO353_26120at 5748.892 kb on - strand, within AO353_26120at 5748.892 kb on - strand, within AO353_26120at 5749.013 kb on + strand, within AO353_26120at 5749.237 kb on - strand, within AO353_26120at 5749.237 kb on - strand, within AO353_26120at 5749.237 kb on - strand, within AO353_26120at 5749.237 kb on - strand, within AO353_26120at 5749.308 kb on + strandat 5749.309 kb on - strandat 5749.360 kb on - strandat 5749.360 kb on - strandat 5749.442 kb on + strand, within AO353_26125at 5749.442 kb on + strand, within AO353_26125at 5749.500 kb on - strand, within AO353_26125at 5749.500 kb on - strand, within AO353_26125at 5749.534 kb on - strand, within AO353_26125at 5749.543 kb on + strand, within AO353_26125at 5749.586 kb on - strand, within AO353_26125at 5749.682 kb on + strandat 5749.683 kb on - strandat 5749.769 kb on + strandat 5749.770 kb on - strandat 5749.846 kb on + strandat 5749.846 kb on + strandat 5749.846 kb on + strandat 5749.846 kb on + strandat 5749.846 kb on + strandat 5749.847 kb on - strandat 5749.847 kb on - strandat 5749.847 kb on - strandat 5749.864 kb on + strandat 5749.864 kb on + strandat 5749.864 kb on + strandat 5749.864 kb on + strandat 5749.865 kb on - strandat 5749.865 kb on - strandat 5749.865 kb on - strandat 5749.865 kb on - strandat 5749.865 kb on - strandat 5749.865 kb on - strandat 5749.865 kb on - strandat 5749.865 kb on - strandat 5750.065 kb on + strand, within AO353_26130at 5750.065 kb on + strand, within AO353_26130at 5750.065 kb on + strand, within AO353_26130at 5750.065 kb on + strand, within AO353_26130at 5750.065 kb on + strand, within AO353_26130at 5750.066 kb on - strand, within AO353_26130at 5750.066 kb on - strand, within AO353_26130at 5750.066 kb on - strand, within AO353_26130at 5750.127 kb on - strand, within AO353_26130at 5750.127 kb on - strand, within AO353_26130at 5750.235 kb on + strand, within AO353_26130at 5750.255 kb on + strand, within AO353_26130at 5750.255 kb on + strand, within AO353_26130at 5750.256 kb on - strand, within AO353_26130at 5750.292 kb on + strand, within AO353_26130at 5750.293 kb on - strand, within AO353_26130at 5750.480 kb on + strand, within AO353_26130at 5750.480 kb on + strand, within AO353_26130at 5750.480 kb on + strand, within AO353_26130at 5750.481 kb on - strand, within AO353_26130at 5750.481 kb on - strand, within AO353_26130at 5750.481 kb on - strand, within AO353_26130at 5750.554 kb on + strand, within AO353_26130at 5750.605 kb on + strand, within AO353_26130at 5750.605 kb on + strand, within AO353_26130at 5750.639 kb on + strand, within AO353_26130at 5750.639 kb on + strand, within AO353_26130at 5750.639 kb on + strand, within AO353_26130at 5750.639 kb on + strand, within AO353_26130at 5750.639 kb on + strand, within AO353_26130at 5750.639 kb on + strand, within AO353_26130at 5750.639 kb on + strand, within AO353_26130at 5750.639 kb on + strand, within AO353_26130at 5750.640 kb on - strand, within AO353_26130at 5750.640 kb on - strand, within AO353_26130at 5750.640 kb on - strand, within AO353_26130at 5750.640 kb on - strand, within AO353_26130at 5750.640 kb on - strand, within AO353_26130at 5750.640 kb on - strand, within AO353_26130at 5750.640 kb on - strand, within AO353_26130at 5750.642 kb on + strand, within AO353_26130at 5750.643 kb on - strand, within AO353_26130at 5750.644 kb on + strand, within AO353_26130at 5750.644 kb on + strand, within AO353_26130at 5750.644 kb on + strand, within AO353_26130at 5750.644 kb on + strand, within AO353_26130at 5750.644 kb on + strand, within AO353_26130at 5750.644 kb on + strand, within AO353_26130at 5750.644 kb on + strand, within AO353_26130at 5750.645 kb on - strand, within AO353_26130at 5750.645 kb on - strand, within AO353_26130at 5750.645 kb on - strand, within AO353_26130at 5750.645 kb on - strand, within AO353_26130at 5750.645 kb on - strand, within AO353_26130at 5750.645 kb on - strand, within AO353_26130at 5750.645 kb on - strand, within AO353_26130at 5750.645 kb on - strand, within AO353_26130at 5750.645 kb on - strand, within AO353_26130at 5750.662 kb on + strand, within AO353_26130at 5750.662 kb on + strand, within AO353_26130at 5750.662 kb on + strand, within AO353_26130at 5750.663 kb on - strand, within AO353_26130at 5750.663 kb on - strand, within AO353_26130

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
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5,748,851 + AO353_26120 0.24 +0.9
5,748,851 + AO353_26120 0.24 -0.1
5,748,851 + AO353_26120 0.24 +0.3
5,748,851 + AO353_26120 0.24 -0.6
5,748,851 + AO353_26120 0.24 +0.5
5,748,851 + AO353_26120 0.24 -0.5
5,748,851 + AO353_26120 0.24 +1.5
5,748,855 + AO353_26120 0.25 +0.8
5,748,855 + AO353_26120 0.25 -0.1
5,748,855 + AO353_26120 0.25 +0.5
5,748,855 + AO353_26120 0.25 -0.4
5,748,855 + AO353_26120 0.25 +0.5
5,748,889 - AO353_26120 0.30 -0.1
5,748,892 - AO353_26120 0.30 -1.5
5,748,892 - AO353_26120 0.30 -0.5
5,748,892 - AO353_26120 0.30 -1.4
5,748,892 - AO353_26120 0.30 +0.5
5,748,892 - AO353_26120 0.30 -0.5
5,748,892 - +2.1
5,748,892 - AO353_26120 0.30 +0.2
5,748,892 - AO353_26120 0.30 -0.0
5,748,892 - AO353_26120 0.30 -2.2
5,749,013 + AO353_26120 0.48 -1.6
5,749,237 - AO353_26120 0.81 -0.1
5,749,237 - AO353_26120 0.81 -0.8
5,749,237 - AO353_26120 0.81 -0.1
5,749,237 - AO353_26120 0.81 +0.5
5,749,308 + -0.6
5,749,309 - -0.7
5,749,360 - -0.7
5,749,360 - -0.4
5,749,442 + AO353_26125 0.24 +0.9
5,749,442 + AO353_26125 0.24 +1.3
5,749,500 - AO353_26125 0.43 -0.3
5,749,500 - AO353_26125 0.43 +0.2
5,749,534 - AO353_26125 0.54 +0.3
5,749,543 + AO353_26125 0.57 +0.4
5,749,586 - AO353_26125 0.71 +0.6
5,749,682 + +0.5
5,749,683 - -1.1
5,749,769 + -1.5
5,749,770 - -0.2
5,749,846 + +0.1
5,749,846 + +0.2
5,749,846 + -1.1
5,749,846 + +0.5
5,749,846 + +1.5
5,749,847 - -0.6
5,749,847 - +1.0
5,749,847 - -2.1
5,749,864 + -0.8
5,749,864 + -0.6
5,749,864 + +0.6
5,749,864 + +1.1
5,749,865 - +2.2
5,749,865 - -0.3
5,749,865 - -0.5
5,749,865 - -1.0
5,749,865 - -0.8
5,749,865 - -1.2
5,749,865 - +0.4
5,749,865 - +0.7
5,750,065 + AO353_26130 0.11 -0.8
5,750,065 + AO353_26130 0.11 +0.7
5,750,065 + AO353_26130 0.11 -1.4
5,750,065 + AO353_26130 0.11 -0.4
5,750,065 + AO353_26130 0.11 +0.1
5,750,066 - AO353_26130 0.11 +0.5
5,750,066 - AO353_26130 0.11 -0.2
5,750,066 - AO353_26130 0.11 -0.6
5,750,127 - AO353_26130 0.12 +0.5
5,750,127 - AO353_26130 0.12 +1.0
5,750,235 + AO353_26130 0.15 -1.3
5,750,255 + AO353_26130 0.16 -0.5
5,750,255 + AO353_26130 0.16 +0.1
5,750,256 - AO353_26130 0.16 -0.3
5,750,292 + AO353_26130 0.17 +0.1
5,750,293 - AO353_26130 0.17 -1.0
5,750,480 + AO353_26130 0.22 +0.7
5,750,480 + AO353_26130 0.22 +0.2
5,750,480 + AO353_26130 0.22 -1.3
5,750,481 - AO353_26130 0.22 +0.3
5,750,481 - AO353_26130 0.22 -0.2
5,750,481 - AO353_26130 0.22 -0.1
5,750,554 + AO353_26130 0.24 +0.2
5,750,605 + AO353_26130 0.26 -1.1
5,750,605 + AO353_26130 0.26 -0.6
5,750,639 + AO353_26130 0.27 +0.6
5,750,639 + AO353_26130 0.27 -1.0
5,750,639 + AO353_26130 0.27 +0.2
5,750,639 + AO353_26130 0.27 -0.3
5,750,639 + AO353_26130 0.27 +0.2
5,750,639 + AO353_26130 0.27 -0.4
5,750,639 + AO353_26130 0.27 +0.5
5,750,639 + AO353_26130 0.27 -0.1
5,750,640 - AO353_26130 0.27 -0.5
5,750,640 - AO353_26130 0.27 -1.4
5,750,640 - AO353_26130 0.27 -0.3
5,750,640 - AO353_26130 0.27 -0.7
5,750,640 - AO353_26130 0.27 -0.0
5,750,640 - AO353_26130 0.27 -1.3
5,750,640 - AO353_26130 0.27 +0.2
5,750,642 + AO353_26130 0.27 +0.3
5,750,643 - AO353_26130 0.27 +1.7
5,750,644 + AO353_26130 0.27 +1.5
5,750,644 + AO353_26130 0.27 +0.5
5,750,644 + AO353_26130 0.27 +0.5
5,750,644 + AO353_26130 0.27 -1.1
5,750,644 + AO353_26130 0.27 -1.3
5,750,644 + AO353_26130 0.27 -0.8
5,750,644 + AO353_26130 0.27 -0.4
5,750,645 - AO353_26130 0.27 +1.1
5,750,645 - AO353_26130 0.27 -2.4
5,750,645 - AO353_26130 0.27 +0.5
5,750,645 - AO353_26130 0.27 -0.3
5,750,645 - AO353_26130 0.27 -0.4
5,750,645 - AO353_26130 0.27 -1.8
5,750,645 - AO353_26130 0.27 -0.1
5,750,645 - AO353_26130 0.27 -0.8
5,750,645 - AO353_26130 0.27 -1.3
5,750,662 + AO353_26130 0.27 -0.7
5,750,662 + AO353_26130 0.27 -0.4
5,750,662 + AO353_26130 0.27 +0.7
5,750,663 - AO353_26130 0.27 -1.3
5,750,663 - AO353_26130 0.27 -0.1

Or see this region's nucleotide sequence