Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_25845

Experiment: L-Aspartic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_25840 and AO353_25845 are separated by 76 nucleotidesAO353_25845 and AO353_25850 are separated by 403 nucleotides AO353_25840: AO353_25840 - hypothetical protein, at 5,696,613 to 5,698,358 _25840 AO353_25845: AO353_25845 - GNAT family acetyltransferase, at 5,698,435 to 5,698,926 _25845 AO353_25850: AO353_25850 - peptidase C45, at 5,699,330 to 5,700,469 _25850 Position (kb) 5698 5699Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5697.525 kb on + strand, within AO353_25840at 5697.525 kb on + strand, within AO353_25840at 5697.526 kb on - strand, within AO353_25840at 5697.526 kb on - strand, within AO353_25840at 5697.526 kb on - strand, within AO353_25840at 5697.526 kb on - strand, within AO353_25840at 5697.570 kb on + strand, within AO353_25840at 5697.570 kb on + strand, within AO353_25840at 5697.570 kb on + strand, within AO353_25840at 5697.570 kb on + strand, within AO353_25840at 5697.571 kb on - strand, within AO353_25840at 5697.660 kb on + strand, within AO353_25840at 5697.660 kb on + strand, within AO353_25840at 5697.660 kb on + strand, within AO353_25840at 5697.660 kb on + strand, within AO353_25840at 5697.792 kb on + strand, within AO353_25840at 5697.792 kb on + strand, within AO353_25840at 5697.792 kb on + strand, within AO353_25840at 5697.792 kb on + strand, within AO353_25840at 5697.793 kb on - strand, within AO353_25840at 5697.793 kb on - strand, within AO353_25840at 5697.799 kb on - strand, within AO353_25840at 5697.879 kb on + strand, within AO353_25840at 5697.879 kb on + strand, within AO353_25840at 5697.879 kb on + strand, within AO353_25840at 5697.879 kb on + strand, within AO353_25840at 5697.879 kb on + strand, within AO353_25840at 5697.880 kb on - strand, within AO353_25840at 5697.880 kb on - strand, within AO353_25840at 5697.889 kb on - strand, within AO353_25840at 5697.889 kb on - strand, within AO353_25840at 5697.889 kb on - strand, within AO353_25840at 5697.889 kb on - strand, within AO353_25840at 5697.906 kb on + strand, within AO353_25840at 5697.907 kb on - strand, within AO353_25840at 5697.907 kb on - strand, within AO353_25840at 5697.907 kb on - strand, within AO353_25840at 5697.943 kb on - strand, within AO353_25840at 5697.975 kb on + strand, within AO353_25840at 5697.975 kb on + strand, within AO353_25840at 5698.034 kb on + strand, within AO353_25840at 5698.063 kb on - strand, within AO353_25840at 5698.146 kb on + strand, within AO353_25840at 5698.147 kb on - strand, within AO353_25840at 5698.147 kb on - strand, within AO353_25840at 5698.272 kb on + strandat 5698.273 kb on - strandat 5698.356 kb on + strandat 5698.357 kb on - strandat 5698.437 kb on - strandat 5698.510 kb on - strand, within AO353_25845at 5698.511 kb on + strand, within AO353_25845at 5698.511 kb on + strand, within AO353_25845at 5698.511 kb on + strand, within AO353_25845at 5698.511 kb on + strand, within AO353_25845at 5698.511 kb on + strand, within AO353_25845at 5698.512 kb on - strand, within AO353_25845at 5698.877 kb on - strandat 5698.889 kb on + strandat 5698.889 kb on + strandat 5698.890 kb on - strandat 5698.999 kb on + strandat 5699.000 kb on - strandat 5699.069 kb on - strandat 5699.137 kb on - strandat 5699.146 kb on - strandat 5699.146 kb on - strandat 5699.147 kb on + strandat 5699.148 kb on - strandat 5699.183 kb on + strandat 5699.184 kb on - strandat 5699.246 kb on + strandat 5699.247 kb on - strandat 5699.291 kb on + strandat 5699.291 kb on + strandat 5699.291 kb on + strandat 5699.291 kb on + strandat 5699.291 kb on + strandat 5699.291 kb on + strandat 5699.291 kb on + strandat 5699.291 kb on + strandat 5699.291 kb on + strandat 5699.292 kb on - strandat 5699.292 kb on - strandat 5699.292 kb on - strandat 5699.292 kb on - strandat 5699.292 kb on - strandat 5699.292 kb on - strandat 5699.292 kb on - strandat 5699.292 kb on - strandat 5699.292 kb on - strandat 5699.344 kb on + strandat 5699.344 kb on + strandat 5699.344 kb on + strandat 5699.344 kb on + strandat 5699.344 kb on + strandat 5699.344 kb on + strandat 5699.344 kb on + strandat 5699.344 kb on + strandat 5699.344 kb on + strandat 5699.345 kb on - strandat 5699.345 kb on - strandat 5699.409 kb on - strandat 5699.453 kb on + strand, within AO353_25850at 5699.453 kb on + strand, within AO353_25850at 5699.453 kb on + strand, within AO353_25850at 5699.480 kb on + strand, within AO353_25850at 5699.480 kb on + strand, within AO353_25850at 5699.481 kb on - strand, within AO353_25850at 5699.549 kb on + strand, within AO353_25850at 5699.602 kb on + strand, within AO353_25850at 5699.811 kb on + strand, within AO353_25850at 5699.811 kb on + strand, within AO353_25850at 5699.811 kb on + strand, within AO353_25850at 5699.811 kb on + strand, within AO353_25850at 5699.811 kb on + strand, within AO353_25850at 5699.811 kb on + strand, within AO353_25850at 5699.811 kb on + strand, within AO353_25850at 5699.812 kb on - strand, within AO353_25850at 5699.812 kb on - strand, within AO353_25850at 5699.812 kb on - strand, within AO353_25850at 5699.812 kb on - strand, within AO353_25850at 5699.885 kb on + strand, within AO353_25850at 5699.885 kb on + strand, within AO353_25850at 5699.886 kb on - strand, within AO353_25850at 5699.907 kb on - strand, within AO353_25850at 5699.907 kb on - strand, within AO353_25850

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
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5,697,525 + AO353_25840 0.52 -0.2
5,697,525 + AO353_25840 0.52 -0.1
5,697,526 - AO353_25840 0.52 -1.2
5,697,526 - AO353_25840 0.52 +2.5
5,697,526 - AO353_25840 0.52 -0.4
5,697,526 - AO353_25840 0.52 -0.9
5,697,570 + AO353_25840 0.55 -0.5
5,697,570 + AO353_25840 0.55 -0.8
5,697,570 + AO353_25840 0.55 +0.6
5,697,570 + AO353_25840 0.55 -1.1
5,697,571 - AO353_25840 0.55 -1.2
5,697,660 + AO353_25840 0.60 -0.5
5,697,660 + AO353_25840 0.60 +0.4
5,697,660 + AO353_25840 0.60 -1.9
5,697,660 + AO353_25840 0.60 +1.5
5,697,792 + AO353_25840 0.68 +0.0
5,697,792 + AO353_25840 0.68 -0.5
5,697,792 + AO353_25840 0.68 +0.5
5,697,792 + AO353_25840 0.68 -0.0
5,697,793 - AO353_25840 0.68 -1.0
5,697,793 - AO353_25840 0.68 -0.5
5,697,799 - AO353_25840 0.68 -0.1
5,697,879 + AO353_25840 0.73 -2.0
5,697,879 + AO353_25840 0.73 -0.1
5,697,879 + AO353_25840 0.73 -0.1
5,697,879 + AO353_25840 0.73 +0.9
5,697,879 + AO353_25840 0.73 +0.7
5,697,880 - AO353_25840 0.73 +0.5
5,697,880 - AO353_25840 0.73 +0.7
5,697,889 - AO353_25840 0.73 +1.2
5,697,889 - AO353_25840 0.73 +0.2
5,697,889 - AO353_25840 0.73 +0.5
5,697,889 - AO353_25840 0.73 +0.3
5,697,906 + AO353_25840 0.74 +0.5
5,697,907 - AO353_25840 0.74 -1.1
5,697,907 - AO353_25840 0.74 -1.5
5,697,907 - AO353_25840 0.74 +0.1
5,697,943 - AO353_25840 0.76 +0.2
5,697,975 + AO353_25840 0.78 +0.1
5,697,975 + AO353_25840 0.78 -0.6
5,698,034 + AO353_25840 0.81 -0.2
5,698,063 - AO353_25840 0.83 +1.1
5,698,146 + AO353_25840 0.88 +0.5
5,698,147 - AO353_25840 0.88 -1.0
5,698,147 - AO353_25840 0.88 -1.4
5,698,272 + -0.1
5,698,273 - +0.5
5,698,356 + -1.7
5,698,357 - -0.3
5,698,437 - -0.6
5,698,510 - AO353_25845 0.15 -2.0
5,698,511 + AO353_25845 0.15 -2.3
5,698,511 + AO353_25845 0.15 -0.5
5,698,511 + AO353_25845 0.15 -1.3
5,698,511 + AO353_25845 0.15 -0.7
5,698,511 + AO353_25845 0.15 -1.3
5,698,512 - AO353_25845 0.16 -1.5
5,698,877 - +1.0
5,698,889 + -0.1
5,698,889 + -0.5
5,698,890 - -0.5
5,698,999 + +0.0
5,699,000 - +0.1
5,699,069 - +0.6
5,699,137 - -1.2
5,699,146 - -0.1
5,699,146 - +0.3
5,699,147 + -0.9
5,699,148 - -0.5
5,699,183 + -1.9
5,699,184 - -0.5
5,699,246 + -2.0
5,699,247 - +0.5
5,699,291 + -0.5
5,699,291 + -0.5
5,699,291 + -0.3
5,699,291 + -1.6
5,699,291 + +0.1
5,699,291 + -0.0
5,699,291 + -1.4
5,699,291 + +2.8
5,699,291 + +0.5
5,699,292 - +0.3
5,699,292 - -1.0
5,699,292 - -0.8
5,699,292 - +0.6
5,699,292 - +0.2
5,699,292 - +1.1
5,699,292 - +0.9
5,699,292 - +1.1
5,699,292 - -1.2
5,699,344 + -0.3
5,699,344 + +1.1
5,699,344 + -1.3
5,699,344 + +2.5
5,699,344 + +1.5
5,699,344 + +0.0
5,699,344 + -0.1
5,699,344 + +0.6
5,699,344 + +0.5
5,699,345 - -0.1
5,699,345 - -0.9
5,699,409 - +0.7
5,699,453 + AO353_25850 0.11 +0.4
5,699,453 + AO353_25850 0.11 +0.5
5,699,453 + AO353_25850 0.11 -2.3
5,699,480 + AO353_25850 0.13 -0.3
5,699,480 + AO353_25850 0.13 +0.3
5,699,481 - AO353_25850 0.13 +0.5
5,699,549 + AO353_25850 0.19 +0.6
5,699,602 + AO353_25850 0.24 +0.1
5,699,811 + AO353_25850 0.42 -0.6
5,699,811 + AO353_25850 0.42 +1.5
5,699,811 + AO353_25850 0.42 -0.5
5,699,811 + AO353_25850 0.42 -0.5
5,699,811 + AO353_25850 0.42 -2.2
5,699,811 + AO353_25850 0.42 -0.1
5,699,811 + AO353_25850 0.42 +1.9
5,699,812 - AO353_25850 0.42 -0.7
5,699,812 - AO353_25850 0.42 +1.1
5,699,812 - AO353_25850 0.42 -0.5
5,699,812 - AO353_25850 0.42 -1.1
5,699,885 + AO353_25850 0.49 -1.5
5,699,885 + AO353_25850 0.49 +0.8
5,699,886 - AO353_25850 0.49 +3.1
5,699,907 - AO353_25850 0.51 -0.5
5,699,907 - AO353_25850 0.51 +1.1

Or see this region's nucleotide sequence