Experiment: L-Aspartic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_24950 and AO353_24955 are separated by 41 nucleotides AO353_24955 and AO353_24960 are separated by 144 nucleotides AO353_24960 and AO353_24965 are separated by 48 nucleotides
AO353_24950: AO353_24950 - thioredoxin, at 5,502,382 to 5,504,370
_24950
AO353_24955: AO353_24955 - alkylhydroperoxidase, at 5,504,412 to 5,504,759
_24955
AO353_24960: AO353_24960 - sulfate ABC transporter substrate-binding protein, at 5,504,904 to 5,505,494
_24960
AO353_24965: AO353_24965 - formate dehydrogenase, at 5,505,543 to 5,507,969
_24965
Position (kb)
5504
5505
5506 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 5503.904 kb on - strand, within AO353_24950 at 5503.904 kb on - strand, within AO353_24950 at 5503.904 kb on - strand, within AO353_24950 at 5504.035 kb on + strand, within AO353_24950 at 5504.036 kb on - strand, within AO353_24950 at 5504.069 kb on - strand, within AO353_24950 at 5504.069 kb on - strand, within AO353_24950 at 5504.296 kb on + strand at 5504.296 kb on + strand at 5504.297 kb on - strand at 5504.297 kb on - strand at 5504.297 kb on - strand at 5504.297 kb on - strand at 5504.297 kb on - strand at 5504.351 kb on + strand at 5504.351 kb on + strand at 5504.352 kb on - strand at 5504.445 kb on + strand at 5504.445 kb on + strand at 5504.445 kb on + strand at 5504.445 kb on + strand at 5504.445 kb on + strand at 5504.445 kb on + strand at 5504.445 kb on + strand at 5504.445 kb on + strand at 5504.446 kb on - strand at 5504.446 kb on - strand at 5504.446 kb on - strand at 5504.446 kb on - strand at 5504.464 kb on + strand, within AO353_24955 at 5504.464 kb on + strand, within AO353_24955 at 5504.464 kb on + strand, within AO353_24955 at 5504.464 kb on + strand, within AO353_24955 at 5504.464 kb on + strand, within AO353_24955 at 5504.464 kb on + strand, within AO353_24955 at 5504.464 kb on + strand, within AO353_24955 at 5504.464 kb on + strand, within AO353_24955 at 5504.464 kb on + strand, within AO353_24955 at 5504.465 kb on - strand, within AO353_24955 at 5504.465 kb on - strand, within AO353_24955 at 5504.465 kb on - strand, within AO353_24955 at 5504.465 kb on - strand, within AO353_24955 at 5504.465 kb on - strand, within AO353_24955 at 5504.465 kb on - strand, within AO353_24955 at 5504.475 kb on + strand, within AO353_24955 at 5504.476 kb on - strand, within AO353_24955 at 5504.509 kb on + strand, within AO353_24955 at 5504.509 kb on + strand, within AO353_24955 at 5504.509 kb on + strand, within AO353_24955 at 5504.509 kb on + strand, within AO353_24955 at 5504.509 kb on + strand, within AO353_24955 at 5504.509 kb on + strand, within AO353_24955 at 5504.510 kb on - strand, within AO353_24955 at 5504.510 kb on - strand, within AO353_24955 at 5504.510 kb on - strand, within AO353_24955 at 5504.510 kb on - strand, within AO353_24955 at 5504.510 kb on - strand, within AO353_24955 at 5504.510 kb on - strand, within AO353_24955 at 5504.510 kb on - strand, within AO353_24955 at 5504.510 kb on - strand, within AO353_24955 at 5504.762 kb on - strand at 5504.762 kb on - strand at 5504.786 kb on + strand at 5504.787 kb on - strand at 5504.787 kb on - strand at 5504.807 kb on + strand at 5504.807 kb on + strand at 5504.807 kb on + strand at 5504.808 kb on - strand at 5504.809 kb on + strand at 5504.809 kb on + strand at 5504.809 kb on + strand at 5504.809 kb on + strand at 5504.810 kb on - strand at 5505.051 kb on - strand, within AO353_24960 at 5505.061 kb on - strand, within AO353_24960 at 5505.090 kb on + strand, within AO353_24960 at 5505.090 kb on + strand, within AO353_24960 at 5505.091 kb on - strand, within AO353_24960 at 5505.091 kb on - strand, within AO353_24960 at 5505.091 kb on - strand, within AO353_24960 at 5505.091 kb on - strand, within AO353_24960 at 5505.091 kb on - strand, within AO353_24960 at 5505.091 kb on - strand, within AO353_24960 at 5505.091 kb on - strand, within AO353_24960 at 5505.185 kb on + strand, within AO353_24960 at 5505.244 kb on + strand, within AO353_24960 at 5505.244 kb on + strand, within AO353_24960 at 5505.244 kb on + strand, within AO353_24960 at 5505.244 kb on + strand, within AO353_24960 at 5505.245 kb on - strand, within AO353_24960 at 5505.245 kb on - strand, within AO353_24960 at 5505.249 kb on - strand, within AO353_24960 at 5505.249 kb on - strand, within AO353_24960 at 5505.429 kb on + strand, within AO353_24960 at 5505.430 kb on - strand, within AO353_24960 at 5505.528 kb on + strand at 5505.630 kb on - strand at 5505.720 kb on + strand at 5505.721 kb on - strand at 5505.721 kb on - strand at 5505.775 kb on - strand at 5505.775 kb on - strand at 5505.775 kb on - strand at 5505.775 kb on - strand at 5505.775 kb on - strand at 5505.807 kb on + strand, within AO353_24965 at 5505.807 kb on + strand, within AO353_24965 at 5505.808 kb on - strand, within AO353_24965 at 5505.819 kb on + strand, within AO353_24965 at 5505.822 kb on - strand, within AO353_24965 at 5505.822 kb on - strand, within AO353_24965 at 5505.903 kb on + strand, within AO353_24965 at 5505.927 kb on + strand, within AO353_24965 at 5505.990 kb on + strand, within AO353_24965 at 5505.990 kb on + strand, within AO353_24965 at 5506.011 kb on + strand, within AO353_24965 at 5506.011 kb on + strand, within AO353_24965 at 5506.011 kb on + strand, within AO353_24965 at 5506.011 kb on + strand, within AO353_24965 at 5506.011 kb on + strand, within AO353_24965 at 5506.012 kb on - strand, within AO353_24965 at 5506.012 kb on - strand, within AO353_24965 at 5506.012 kb on - strand, within AO353_24965 at 5506.020 kb on + strand, within AO353_24965 at 5506.309 kb on - strand, within AO353_24965 at 5506.341 kb on + strand, within AO353_24965 at 5506.341 kb on + strand, within AO353_24965 at 5506.342 kb on - strand, within AO353_24965 at 5506.342 kb on - strand, within AO353_24965 at 5506.350 kb on + strand, within AO353_24965 at 5506.350 kb on + strand, within AO353_24965 at 5506.351 kb on - strand, within AO353_24965 at 5506.351 kb on - strand, within AO353_24965 at 5506.351 kb on - strand, within AO353_24965 at 5506.399 kb on - strand, within AO353_24965 at 5506.399 kb on - strand, within AO353_24965 at 5506.410 kb on + strand, within AO353_24965 at 5506.411 kb on - strand, within AO353_24965 at 5506.411 kb on - strand, within AO353_24965
Per-strain Table
Position Strand Gene LocusTag Fraction L-Aspartic Acid (C) remove 5,503,904 - AO353_24950 0.77 -0.1 5,503,904 - AO353_24950 0.77 -0.9 5,503,904 - AO353_24950 0.77 -0.1 5,504,035 + AO353_24950 0.83 +0.0 5,504,036 - AO353_24950 0.83 -0.1 5,504,069 - AO353_24950 0.85 +1.5 5,504,069 - AO353_24950 0.85 -1.9 5,504,296 + +0.5 5,504,296 + -0.1 5,504,297 - -0.4 5,504,297 - -1.2 5,504,297 - -0.1 5,504,297 - -2.1 5,504,297 - -0.4 5,504,351 + -2.7 5,504,351 + -2.4 5,504,352 - +0.5 5,504,445 + -0.1 5,504,445 + +2.2 5,504,445 + +0.3 5,504,445 + +0.9 5,504,445 + -0.2 5,504,445 + +0.1 5,504,445 + -0.9 5,504,445 + -1.4 5,504,446 - -1.9 5,504,446 - -1.1 5,504,446 - -0.9 5,504,446 - +0.1 5,504,464 + AO353_24955 0.15 -0.1 5,504,464 + AO353_24955 0.15 -0.9 5,504,464 + AO353_24955 0.15 -1.1 5,504,464 + AO353_24955 0.15 +0.4 5,504,464 + AO353_24955 0.15 -1.1 5,504,464 + AO353_24955 0.15 +0.1 5,504,464 + AO353_24955 0.15 -0.8 5,504,464 + AO353_24955 0.15 -0.4 5,504,464 + AO353_24955 0.15 -0.4 5,504,465 - AO353_24955 0.15 -1.1 5,504,465 - AO353_24955 0.15 +1.0 5,504,465 - AO353_24955 0.15 -1.0 5,504,465 - AO353_24955 0.15 -0.9 5,504,465 - AO353_24955 0.15 +1.1 5,504,465 - AO353_24955 0.15 -0.4 5,504,475 + AO353_24955 0.18 -0.5 5,504,476 - AO353_24955 0.18 +0.2 5,504,509 + AO353_24955 0.28 +0.5 5,504,509 + AO353_24955 0.28 -1.3 5,504,509 + AO353_24955 0.28 +0.7 5,504,509 + AO353_24955 0.28 +1.0 5,504,509 + AO353_24955 0.28 -2.0 5,504,509 + AO353_24955 0.28 -0.7 5,504,510 - AO353_24955 0.28 +0.5 5,504,510 - AO353_24955 0.28 -0.3 5,504,510 - AO353_24955 0.28 +0.5 5,504,510 - AO353_24955 0.28 -0.2 5,504,510 - AO353_24955 0.28 -0.5 5,504,510 - AO353_24955 0.28 -1.4 5,504,510 - AO353_24955 0.28 +0.1 5,504,510 - AO353_24955 0.28 +0.5 5,504,762 - +1.1 5,504,762 - -1.0 5,504,786 + -0.1 5,504,787 - -2.5 5,504,787 - -0.2 5,504,807 + -0.5 5,504,807 + -0.1 5,504,807 + -0.9 5,504,808 - -1.3 5,504,809 + -0.9 5,504,809 + -0.1 5,504,809 + -0.3 5,504,809 + -1.2 5,504,810 - +1.5 5,505,051 - AO353_24960 0.25 +1.3 5,505,061 - AO353_24960 0.27 -0.1 5,505,090 + AO353_24960 0.31 -0.0 5,505,090 + AO353_24960 0.31 -0.3 5,505,091 - AO353_24960 0.32 -0.1 5,505,091 - AO353_24960 0.32 -0.0 5,505,091 - AO353_24960 0.32 -0.9 5,505,091 - AO353_24960 0.32 +1.5 5,505,091 - AO353_24960 0.32 +1.2 5,505,091 - AO353_24960 0.32 -1.4 5,505,091 - AO353_24960 0.32 +1.5 5,505,185 + AO353_24960 0.48 +1.5 5,505,244 + AO353_24960 0.58 -1.0 5,505,244 + AO353_24960 0.58 +0.9 5,505,244 + AO353_24960 0.58 -1.5 5,505,244 + AO353_24960 0.58 +1.1 5,505,245 - AO353_24960 0.58 +0.9 5,505,245 - AO353_24960 0.58 -0.1 5,505,249 - AO353_24960 0.58 +0.1 5,505,249 - AO353_24960 0.58 +0.5 5,505,429 + AO353_24960 0.89 +0.2 5,505,430 - AO353_24960 0.89 -0.3 5,505,528 + +0.6 5,505,630 - -1.9 5,505,720 + -1.5 5,505,721 - -0.3 5,505,721 - +0.5 5,505,775 - -0.3 5,505,775 - +1.1 5,505,775 - +1.3 5,505,775 - +0.5 5,505,775 - +1.1 5,505,807 + AO353_24965 0.11 +0.1 5,505,807 + AO353_24965 0.11 -0.2 5,505,808 - AO353_24965 0.11 +0.5 5,505,819 + AO353_24965 0.11 -1.2 5,505,822 - AO353_24965 0.11 +0.7 5,505,822 - AO353_24965 0.11 +1.1 5,505,903 + AO353_24965 0.15 -0.1 5,505,927 + AO353_24965 0.16 +0.1 5,505,990 + AO353_24965 0.18 -0.9 5,505,990 + AO353_24965 0.18 +0.1 5,506,011 + AO353_24965 0.19 -0.1 5,506,011 + AO353_24965 0.19 -1.1 5,506,011 + AO353_24965 0.19 -2.5 5,506,011 + AO353_24965 0.19 -0.8 5,506,011 + AO353_24965 0.19 -0.8 5,506,012 - AO353_24965 0.19 -0.2 5,506,012 - AO353_24965 0.19 -1.3 5,506,012 - AO353_24965 0.19 +0.7 5,506,020 + AO353_24965 0.20 +0.2 5,506,309 - AO353_24965 0.32 -1.3 5,506,341 + AO353_24965 0.33 -1.4 5,506,341 + AO353_24965 0.33 -0.3 5,506,342 - AO353_24965 0.33 -2.1 5,506,342 - AO353_24965 0.33 -0.9 5,506,350 + AO353_24965 0.33 +0.7 5,506,350 + AO353_24965 0.33 +0.1 5,506,351 - AO353_24965 0.33 +0.5 5,506,351 - AO353_24965 0.33 -0.5 5,506,351 - AO353_24965 0.33 -0.8 5,506,399 - AO353_24965 0.35 -1.6 5,506,399 - AO353_24965 0.35 +0.2 5,506,410 + AO353_24965 0.36 +0.1 5,506,411 - AO353_24965 0.36 -0.5 5,506,411 - AO353_24965 0.36 +0.6
Or see this region's nucleotide sequence