Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_24960

Experiment: L-Aspartic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_24950 and AO353_24955 are separated by 41 nucleotidesAO353_24955 and AO353_24960 are separated by 144 nucleotidesAO353_24960 and AO353_24965 are separated by 48 nucleotides AO353_24950: AO353_24950 - thioredoxin, at 5,502,382 to 5,504,370 _24950 AO353_24955: AO353_24955 - alkylhydroperoxidase, at 5,504,412 to 5,504,759 _24955 AO353_24960: AO353_24960 - sulfate ABC transporter substrate-binding protein, at 5,504,904 to 5,505,494 _24960 AO353_24965: AO353_24965 - formate dehydrogenase, at 5,505,543 to 5,507,969 _24965 Position (kb) 5504 5505 5506Strain fitness (log2 ratio) -2 -1 0 1 2at 5503.904 kb on - strand, within AO353_24950at 5503.904 kb on - strand, within AO353_24950at 5503.904 kb on - strand, within AO353_24950at 5504.035 kb on + strand, within AO353_24950at 5504.036 kb on - strand, within AO353_24950at 5504.069 kb on - strand, within AO353_24950at 5504.069 kb on - strand, within AO353_24950at 5504.296 kb on + strandat 5504.296 kb on + strandat 5504.297 kb on - strandat 5504.297 kb on - strandat 5504.297 kb on - strandat 5504.297 kb on - strandat 5504.297 kb on - strandat 5504.351 kb on + strandat 5504.351 kb on + strandat 5504.352 kb on - strandat 5504.445 kb on + strandat 5504.445 kb on + strandat 5504.445 kb on + strandat 5504.445 kb on + strandat 5504.445 kb on + strandat 5504.445 kb on + strandat 5504.445 kb on + strandat 5504.445 kb on + strandat 5504.446 kb on - strandat 5504.446 kb on - strandat 5504.446 kb on - strandat 5504.446 kb on - strandat 5504.464 kb on + strand, within AO353_24955at 5504.464 kb on + strand, within AO353_24955at 5504.464 kb on + strand, within AO353_24955at 5504.464 kb on + strand, within AO353_24955at 5504.464 kb on + strand, within AO353_24955at 5504.464 kb on + strand, within AO353_24955at 5504.464 kb on + strand, within AO353_24955at 5504.464 kb on + strand, within AO353_24955at 5504.464 kb on + strand, within AO353_24955at 5504.465 kb on - strand, within AO353_24955at 5504.465 kb on - strand, within AO353_24955at 5504.465 kb on - strand, within AO353_24955at 5504.465 kb on - strand, within AO353_24955at 5504.465 kb on - strand, within AO353_24955at 5504.465 kb on - strand, within AO353_24955at 5504.475 kb on + strand, within AO353_24955at 5504.476 kb on - strand, within AO353_24955at 5504.509 kb on + strand, within AO353_24955at 5504.509 kb on + strand, within AO353_24955at 5504.509 kb on + strand, within AO353_24955at 5504.509 kb on + strand, within AO353_24955at 5504.509 kb on + strand, within AO353_24955at 5504.509 kb on + strand, within AO353_24955at 5504.510 kb on - strand, within AO353_24955at 5504.510 kb on - strand, within AO353_24955at 5504.510 kb on - strand, within AO353_24955at 5504.510 kb on - strand, within AO353_24955at 5504.510 kb on - strand, within AO353_24955at 5504.510 kb on - strand, within AO353_24955at 5504.510 kb on - strand, within AO353_24955at 5504.510 kb on - strand, within AO353_24955at 5504.762 kb on - strandat 5504.762 kb on - strandat 5504.786 kb on + strandat 5504.787 kb on - strandat 5504.787 kb on - strandat 5504.807 kb on + strandat 5504.807 kb on + strandat 5504.807 kb on + strandat 5504.808 kb on - strandat 5504.809 kb on + strandat 5504.809 kb on + strandat 5504.809 kb on + strandat 5504.809 kb on + strandat 5504.810 kb on - strandat 5505.051 kb on - strand, within AO353_24960at 5505.061 kb on - strand, within AO353_24960at 5505.090 kb on + strand, within AO353_24960at 5505.090 kb on + strand, within AO353_24960at 5505.091 kb on - strand, within AO353_24960at 5505.091 kb on - strand, within AO353_24960at 5505.091 kb on - strand, within AO353_24960at 5505.091 kb on - strand, within AO353_24960at 5505.091 kb on - strand, within AO353_24960at 5505.091 kb on - strand, within AO353_24960at 5505.091 kb on - strand, within AO353_24960at 5505.185 kb on + strand, within AO353_24960at 5505.244 kb on + strand, within AO353_24960at 5505.244 kb on + strand, within AO353_24960at 5505.244 kb on + strand, within AO353_24960at 5505.244 kb on + strand, within AO353_24960at 5505.245 kb on - strand, within AO353_24960at 5505.245 kb on - strand, within AO353_24960at 5505.249 kb on - strand, within AO353_24960at 5505.249 kb on - strand, within AO353_24960at 5505.429 kb on + strand, within AO353_24960at 5505.430 kb on - strand, within AO353_24960at 5505.528 kb on + strandat 5505.630 kb on - strandat 5505.720 kb on + strandat 5505.721 kb on - strandat 5505.721 kb on - strandat 5505.775 kb on - strandat 5505.775 kb on - strandat 5505.775 kb on - strandat 5505.775 kb on - strandat 5505.775 kb on - strandat 5505.807 kb on + strand, within AO353_24965at 5505.807 kb on + strand, within AO353_24965at 5505.808 kb on - strand, within AO353_24965at 5505.819 kb on + strand, within AO353_24965at 5505.822 kb on - strand, within AO353_24965at 5505.822 kb on - strand, within AO353_24965at 5505.903 kb on + strand, within AO353_24965at 5505.927 kb on + strand, within AO353_24965at 5505.990 kb on + strand, within AO353_24965at 5505.990 kb on + strand, within AO353_24965at 5506.011 kb on + strand, within AO353_24965at 5506.011 kb on + strand, within AO353_24965at 5506.011 kb on + strand, within AO353_24965at 5506.011 kb on + strand, within AO353_24965at 5506.011 kb on + strand, within AO353_24965at 5506.012 kb on - strand, within AO353_24965at 5506.012 kb on - strand, within AO353_24965at 5506.012 kb on - strand, within AO353_24965at 5506.020 kb on + strand, within AO353_24965at 5506.309 kb on - strand, within AO353_24965at 5506.341 kb on + strand, within AO353_24965at 5506.341 kb on + strand, within AO353_24965at 5506.342 kb on - strand, within AO353_24965at 5506.342 kb on - strand, within AO353_24965at 5506.350 kb on + strand, within AO353_24965at 5506.350 kb on + strand, within AO353_24965at 5506.351 kb on - strand, within AO353_24965at 5506.351 kb on - strand, within AO353_24965at 5506.351 kb on - strand, within AO353_24965at 5506.399 kb on - strand, within AO353_24965at 5506.399 kb on - strand, within AO353_24965at 5506.410 kb on + strand, within AO353_24965at 5506.411 kb on - strand, within AO353_24965at 5506.411 kb on - strand, within AO353_24965

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
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5,503,904 - AO353_24950 0.77 -0.1
5,503,904 - AO353_24950 0.77 -0.9
5,503,904 - AO353_24950 0.77 -0.1
5,504,035 + AO353_24950 0.83 +0.0
5,504,036 - AO353_24950 0.83 -0.1
5,504,069 - AO353_24950 0.85 +1.5
5,504,069 - AO353_24950 0.85 -1.9
5,504,296 + +0.5
5,504,296 + -0.1
5,504,297 - -0.4
5,504,297 - -1.2
5,504,297 - -0.1
5,504,297 - -2.1
5,504,297 - -0.4
5,504,351 + -2.7
5,504,351 + -2.4
5,504,352 - +0.5
5,504,445 + -0.1
5,504,445 + +2.2
5,504,445 + +0.3
5,504,445 + +0.9
5,504,445 + -0.2
5,504,445 + +0.1
5,504,445 + -0.9
5,504,445 + -1.4
5,504,446 - -1.9
5,504,446 - -1.1
5,504,446 - -0.9
5,504,446 - +0.1
5,504,464 + AO353_24955 0.15 -0.1
5,504,464 + AO353_24955 0.15 -0.9
5,504,464 + AO353_24955 0.15 -1.1
5,504,464 + AO353_24955 0.15 +0.4
5,504,464 + AO353_24955 0.15 -1.1
5,504,464 + AO353_24955 0.15 +0.1
5,504,464 + AO353_24955 0.15 -0.8
5,504,464 + AO353_24955 0.15 -0.4
5,504,464 + AO353_24955 0.15 -0.4
5,504,465 - AO353_24955 0.15 -1.1
5,504,465 - AO353_24955 0.15 +1.0
5,504,465 - AO353_24955 0.15 -1.0
5,504,465 - AO353_24955 0.15 -0.9
5,504,465 - AO353_24955 0.15 +1.1
5,504,465 - AO353_24955 0.15 -0.4
5,504,475 + AO353_24955 0.18 -0.5
5,504,476 - AO353_24955 0.18 +0.2
5,504,509 + AO353_24955 0.28 +0.5
5,504,509 + AO353_24955 0.28 -1.3
5,504,509 + AO353_24955 0.28 +0.7
5,504,509 + AO353_24955 0.28 +1.0
5,504,509 + AO353_24955 0.28 -2.0
5,504,509 + AO353_24955 0.28 -0.7
5,504,510 - AO353_24955 0.28 +0.5
5,504,510 - AO353_24955 0.28 -0.3
5,504,510 - AO353_24955 0.28 +0.5
5,504,510 - AO353_24955 0.28 -0.2
5,504,510 - AO353_24955 0.28 -0.5
5,504,510 - AO353_24955 0.28 -1.4
5,504,510 - AO353_24955 0.28 +0.1
5,504,510 - AO353_24955 0.28 +0.5
5,504,762 - +1.1
5,504,762 - -1.0
5,504,786 + -0.1
5,504,787 - -2.5
5,504,787 - -0.2
5,504,807 + -0.5
5,504,807 + -0.1
5,504,807 + -0.9
5,504,808 - -1.3
5,504,809 + -0.9
5,504,809 + -0.1
5,504,809 + -0.3
5,504,809 + -1.2
5,504,810 - +1.5
5,505,051 - AO353_24960 0.25 +1.3
5,505,061 - AO353_24960 0.27 -0.1
5,505,090 + AO353_24960 0.31 -0.0
5,505,090 + AO353_24960 0.31 -0.3
5,505,091 - AO353_24960 0.32 -0.1
5,505,091 - AO353_24960 0.32 -0.0
5,505,091 - AO353_24960 0.32 -0.9
5,505,091 - AO353_24960 0.32 +1.5
5,505,091 - AO353_24960 0.32 +1.2
5,505,091 - AO353_24960 0.32 -1.4
5,505,091 - AO353_24960 0.32 +1.5
5,505,185 + AO353_24960 0.48 +1.5
5,505,244 + AO353_24960 0.58 -1.0
5,505,244 + AO353_24960 0.58 +0.9
5,505,244 + AO353_24960 0.58 -1.5
5,505,244 + AO353_24960 0.58 +1.1
5,505,245 - AO353_24960 0.58 +0.9
5,505,245 - AO353_24960 0.58 -0.1
5,505,249 - AO353_24960 0.58 +0.1
5,505,249 - AO353_24960 0.58 +0.5
5,505,429 + AO353_24960 0.89 +0.2
5,505,430 - AO353_24960 0.89 -0.3
5,505,528 + +0.6
5,505,630 - -1.9
5,505,720 + -1.5
5,505,721 - -0.3
5,505,721 - +0.5
5,505,775 - -0.3
5,505,775 - +1.1
5,505,775 - +1.3
5,505,775 - +0.5
5,505,775 - +1.1
5,505,807 + AO353_24965 0.11 +0.1
5,505,807 + AO353_24965 0.11 -0.2
5,505,808 - AO353_24965 0.11 +0.5
5,505,819 + AO353_24965 0.11 -1.2
5,505,822 - AO353_24965 0.11 +0.7
5,505,822 - AO353_24965 0.11 +1.1
5,505,903 + AO353_24965 0.15 -0.1
5,505,927 + AO353_24965 0.16 +0.1
5,505,990 + AO353_24965 0.18 -0.9
5,505,990 + AO353_24965 0.18 +0.1
5,506,011 + AO353_24965 0.19 -0.1
5,506,011 + AO353_24965 0.19 -1.1
5,506,011 + AO353_24965 0.19 -2.5
5,506,011 + AO353_24965 0.19 -0.8
5,506,011 + AO353_24965 0.19 -0.8
5,506,012 - AO353_24965 0.19 -0.2
5,506,012 - AO353_24965 0.19 -1.3
5,506,012 - AO353_24965 0.19 +0.7
5,506,020 + AO353_24965 0.20 +0.2
5,506,309 - AO353_24965 0.32 -1.3
5,506,341 + AO353_24965 0.33 -1.4
5,506,341 + AO353_24965 0.33 -0.3
5,506,342 - AO353_24965 0.33 -2.1
5,506,342 - AO353_24965 0.33 -0.9
5,506,350 + AO353_24965 0.33 +0.7
5,506,350 + AO353_24965 0.33 +0.1
5,506,351 - AO353_24965 0.33 +0.5
5,506,351 - AO353_24965 0.33 -0.5
5,506,351 - AO353_24965 0.33 -0.8
5,506,399 - AO353_24965 0.35 -1.6
5,506,399 - AO353_24965 0.35 +0.2
5,506,410 + AO353_24965 0.36 +0.1
5,506,411 - AO353_24965 0.36 -0.5
5,506,411 - AO353_24965 0.36 +0.6

Or see this region's nucleotide sequence