Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_24800

Experiment: L-Aspartic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_24795 and AO353_24800 are separated by 217 nucleotidesAO353_24800 and AO353_24805 are separated by 141 nucleotidesAO353_24805 and AO353_24810 are separated by 92 nucleotides AO353_24795: AO353_24795 - oxidoreductase, at 5,465,303 to 5,467,264 _24795 AO353_24800: AO353_24800 - spermidine/putrescine ABC transporter substrate-binding protein, at 5,467,482 to 5,468,531 _24800 AO353_24805: AO353_24805 - TetR family transcriptional regulator, at 5,468,673 to 5,469,320 _24805 AO353_24810: AO353_24810 - transcriptional regulator, at 5,469,413 to 5,470,129 _24810 Position (kb) 5467 5468 5469Strain fitness (log2 ratio) -2 -1 0 1 2at 5466.501 kb on + strand, within AO353_24795at 5466.501 kb on + strand, within AO353_24795at 5466.501 kb on + strand, within AO353_24795at 5466.502 kb on - strand, within AO353_24795at 5466.681 kb on + strand, within AO353_24795at 5466.733 kb on - strand, within AO353_24795at 5466.777 kb on + strand, within AO353_24795at 5466.888 kb on + strand, within AO353_24795at 5466.888 kb on + strand, within AO353_24795at 5466.889 kb on - strand, within AO353_24795at 5467.122 kb on + strandat 5467.122 kb on + strandat 5467.123 kb on - strandat 5467.330 kb on - strandat 5467.384 kb on + strandat 5467.384 kb on + strandat 5467.384 kb on + strandat 5467.385 kb on - strandat 5467.385 kb on - strandat 5467.427 kb on + strandat 5467.427 kb on + strandat 5467.428 kb on - strandat 5467.580 kb on - strandat 5467.580 kb on - strandat 5467.580 kb on - strandat 5467.580 kb on - strandat 5467.580 kb on - strandat 5467.671 kb on + strand, within AO353_24800at 5467.671 kb on + strand, within AO353_24800at 5467.671 kb on + strand, within AO353_24800at 5467.672 kb on - strand, within AO353_24800at 5467.672 kb on - strand, within AO353_24800at 5467.782 kb on + strand, within AO353_24800at 5467.782 kb on + strand, within AO353_24800at 5467.782 kb on + strand, within AO353_24800at 5467.782 kb on + strand, within AO353_24800at 5467.782 kb on + strand, within AO353_24800at 5467.783 kb on - strand, within AO353_24800at 5467.887 kb on + strand, within AO353_24800at 5467.986 kb on + strand, within AO353_24800at 5467.986 kb on + strand, within AO353_24800at 5468.037 kb on + strand, within AO353_24800at 5468.037 kb on + strand, within AO353_24800at 5468.037 kb on + strand, within AO353_24800at 5468.037 kb on + strand, within AO353_24800at 5468.038 kb on - strand, within AO353_24800at 5468.038 kb on - strand, within AO353_24800at 5468.038 kb on - strand, within AO353_24800at 5468.038 kb on - strand, within AO353_24800at 5468.038 kb on - strand, within AO353_24800at 5468.038 kb on - strand, within AO353_24800at 5468.178 kb on + strand, within AO353_24800at 5468.346 kb on + strand, within AO353_24800at 5468.346 kb on + strand, within AO353_24800at 5468.346 kb on + strand, within AO353_24800at 5468.346 kb on + strand, within AO353_24800at 5468.346 kb on + strand, within AO353_24800at 5468.346 kb on + strand, within AO353_24800at 5468.346 kb on + strand, within AO353_24800at 5468.347 kb on - strand, within AO353_24800at 5468.347 kb on - strand, within AO353_24800at 5468.365 kb on - strand, within AO353_24800at 5468.379 kb on - strand, within AO353_24800at 5468.529 kb on + strandat 5468.529 kb on + strandat 5468.529 kb on + strandat 5468.529 kb on + strandat 5468.530 kb on - strandat 5468.608 kb on - strandat 5468.617 kb on + strandat 5468.836 kb on - strand, within AO353_24805at 5468.836 kb on - strand, within AO353_24805at 5468.868 kb on + strand, within AO353_24805at 5468.868 kb on + strand, within AO353_24805at 5468.868 kb on + strand, within AO353_24805at 5468.868 kb on + strand, within AO353_24805at 5468.868 kb on + strand, within AO353_24805at 5468.868 kb on + strand, within AO353_24805at 5468.868 kb on + strand, within AO353_24805at 5468.869 kb on - strand, within AO353_24805at 5468.869 kb on - strand, within AO353_24805at 5468.869 kb on - strand, within AO353_24805at 5468.869 kb on - strand, within AO353_24805at 5468.869 kb on - strand, within AO353_24805at 5468.869 kb on - strand, within AO353_24805at 5468.869 kb on - strand, within AO353_24805at 5469.073 kb on - strand, within AO353_24805at 5469.073 kb on - strand, within AO353_24805at 5469.091 kb on + strand, within AO353_24805at 5469.091 kb on + strand, within AO353_24805at 5469.092 kb on - strand, within AO353_24805at 5469.103 kb on + strand, within AO353_24805at 5469.104 kb on - strand, within AO353_24805at 5469.224 kb on + strand, within AO353_24805at 5469.341 kb on - strandat 5469.371 kb on + strandat 5469.372 kb on - strandat 5469.372 kb on - strandat 5469.375 kb on - strandat 5469.396 kb on - strandat 5469.396 kb on - strandat 5469.396 kb on - strandat 5469.473 kb on + strandat 5469.473 kb on + strandat 5469.474 kb on - strandat 5469.474 kb on - strandat 5469.477 kb on + strandat 5469.477 kb on + strandat 5469.477 kb on + strandat 5469.478 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
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5,466,501 + AO353_24795 0.61 +0.7
5,466,501 + AO353_24795 0.61 -1.1
5,466,501 + AO353_24795 0.61 -0.1
5,466,502 - AO353_24795 0.61 -0.8
5,466,681 + AO353_24795 0.70 -0.5
5,466,733 - AO353_24795 0.73 -1.8
5,466,777 + AO353_24795 0.75 -0.1
5,466,888 + AO353_24795 0.81 -1.0
5,466,888 + AO353_24795 0.81 -0.4
5,466,889 - AO353_24795 0.81 -1.9
5,467,122 + -0.7
5,467,122 + +0.0
5,467,123 - -0.5
5,467,330 - +0.8
5,467,384 + -0.8
5,467,384 + -0.1
5,467,384 + -0.4
5,467,385 - -0.0
5,467,385 - -1.2
5,467,427 + -1.3
5,467,427 + -0.7
5,467,428 - +0.5
5,467,580 - -0.1
5,467,580 - -0.7
5,467,580 - -2.4
5,467,580 - -0.0
5,467,580 - +0.8
5,467,671 + AO353_24800 0.18 +1.8
5,467,671 + AO353_24800 0.18 -1.1
5,467,671 + AO353_24800 0.18 +0.5
5,467,672 - AO353_24800 0.18 +0.5
5,467,672 - AO353_24800 0.18 +0.5
5,467,782 + AO353_24800 0.29 +2.1
5,467,782 + AO353_24800 0.29 +0.9
5,467,782 + AO353_24800 0.29 +0.8
5,467,782 + AO353_24800 0.29 +0.9
5,467,782 + AO353_24800 0.29 +1.5
5,467,783 - AO353_24800 0.29 -1.5
5,467,887 + AO353_24800 0.39 -1.4
5,467,986 + AO353_24800 0.48 +0.3
5,467,986 + AO353_24800 0.48 +0.0
5,468,037 + AO353_24800 0.53 +0.1
5,468,037 + AO353_24800 0.53 +0.2
5,468,037 + AO353_24800 0.53 -0.5
5,468,037 + AO353_24800 0.53 +0.7
5,468,038 - AO353_24800 0.53 +0.3
5,468,038 - AO353_24800 0.53 -0.6
5,468,038 - AO353_24800 0.53 +0.8
5,468,038 - AO353_24800 0.53 -0.0
5,468,038 - AO353_24800 0.53 +1.2
5,468,038 - AO353_24800 0.53 -0.4
5,468,178 + AO353_24800 0.66 -0.5
5,468,346 + AO353_24800 0.82 -1.3
5,468,346 + AO353_24800 0.82 +0.8
5,468,346 + AO353_24800 0.82 -1.2
5,468,346 + AO353_24800 0.82 -0.6
5,468,346 + AO353_24800 0.82 -0.2
5,468,346 + AO353_24800 0.82 +1.5
5,468,346 + AO353_24800 0.82 +0.9
5,468,347 - AO353_24800 0.82 -0.8
5,468,347 - AO353_24800 0.82 +0.9
5,468,365 - AO353_24800 0.84 +0.7
5,468,379 - AO353_24800 0.85 +1.3
5,468,529 + -0.8
5,468,529 + -0.3
5,468,529 + +0.2
5,468,529 + -1.1
5,468,530 - -0.7
5,468,608 - -0.8
5,468,617 + -0.4
5,468,836 - AO353_24805 0.25 +0.9
5,468,836 - AO353_24805 0.25 -1.3
5,468,868 + AO353_24805 0.30 -0.1
5,468,868 + AO353_24805 0.30 +0.5
5,468,868 + AO353_24805 0.30 +0.3
5,468,868 + AO353_24805 0.30 -0.8
5,468,868 + AO353_24805 0.30 +0.3
5,468,868 + AO353_24805 0.30 -1.7
5,468,868 + AO353_24805 0.30 -0.8
5,468,869 - AO353_24805 0.30 -0.1
5,468,869 - AO353_24805 0.30 +0.2
5,468,869 - AO353_24805 0.30 +1.5
5,468,869 - AO353_24805 0.30 +1.5
5,468,869 - AO353_24805 0.30 -2.4
5,468,869 - AO353_24805 0.30 +1.0
5,468,869 - AO353_24805 0.30 -0.0
5,469,073 - AO353_24805 0.62 -0.5
5,469,073 - AO353_24805 0.62 -0.6
5,469,091 + AO353_24805 0.65 -0.8
5,469,091 + AO353_24805 0.65 -0.8
5,469,092 - AO353_24805 0.65 +0.2
5,469,103 + AO353_24805 0.66 -0.1
5,469,104 - AO353_24805 0.67 -0.5
5,469,224 + AO353_24805 0.85 -0.8
5,469,341 - -0.5
5,469,371 + -0.7
5,469,372 - +0.8
5,469,372 - -0.7
5,469,375 - -0.3
5,469,396 - +1.5
5,469,396 - -1.1
5,469,396 - +0.5
5,469,473 + -0.2
5,469,473 + -0.1
5,469,474 - +0.2
5,469,474 - -0.1
5,469,477 + -0.0
5,469,477 + -1.0
5,469,477 + -0.1
5,469,478 - -0.5

Or see this region's nucleotide sequence