Experiment: L-Aspartic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_24795 and AO353_24800 are separated by 217 nucleotides AO353_24800 and AO353_24805 are separated by 141 nucleotides AO353_24805 and AO353_24810 are separated by 92 nucleotides
AO353_24795: AO353_24795 - oxidoreductase, at 5,465,303 to 5,467,264
_24795
AO353_24800: AO353_24800 - spermidine/putrescine ABC transporter substrate-binding protein, at 5,467,482 to 5,468,531
_24800
AO353_24805: AO353_24805 - TetR family transcriptional regulator, at 5,468,673 to 5,469,320
_24805
AO353_24810: AO353_24810 - transcriptional regulator, at 5,469,413 to 5,470,129
_24810
Position (kb)
5467
5468
5469 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 5466.501 kb on + strand, within AO353_24795 at 5466.501 kb on + strand, within AO353_24795 at 5466.501 kb on + strand, within AO353_24795 at 5466.502 kb on - strand, within AO353_24795 at 5466.681 kb on + strand, within AO353_24795 at 5466.733 kb on - strand, within AO353_24795 at 5466.777 kb on + strand, within AO353_24795 at 5466.888 kb on + strand, within AO353_24795 at 5466.888 kb on + strand, within AO353_24795 at 5466.889 kb on - strand, within AO353_24795 at 5467.122 kb on + strand at 5467.122 kb on + strand at 5467.123 kb on - strand at 5467.330 kb on - strand at 5467.384 kb on + strand at 5467.384 kb on + strand at 5467.384 kb on + strand at 5467.385 kb on - strand at 5467.385 kb on - strand at 5467.427 kb on + strand at 5467.427 kb on + strand at 5467.428 kb on - strand at 5467.580 kb on - strand at 5467.580 kb on - strand at 5467.580 kb on - strand at 5467.580 kb on - strand at 5467.580 kb on - strand at 5467.671 kb on + strand, within AO353_24800 at 5467.671 kb on + strand, within AO353_24800 at 5467.671 kb on + strand, within AO353_24800 at 5467.672 kb on - strand, within AO353_24800 at 5467.672 kb on - strand, within AO353_24800 at 5467.782 kb on + strand, within AO353_24800 at 5467.782 kb on + strand, within AO353_24800 at 5467.782 kb on + strand, within AO353_24800 at 5467.782 kb on + strand, within AO353_24800 at 5467.782 kb on + strand, within AO353_24800 at 5467.783 kb on - strand, within AO353_24800 at 5467.887 kb on + strand, within AO353_24800 at 5467.986 kb on + strand, within AO353_24800 at 5467.986 kb on + strand, within AO353_24800 at 5468.037 kb on + strand, within AO353_24800 at 5468.037 kb on + strand, within AO353_24800 at 5468.037 kb on + strand, within AO353_24800 at 5468.037 kb on + strand, within AO353_24800 at 5468.038 kb on - strand, within AO353_24800 at 5468.038 kb on - strand, within AO353_24800 at 5468.038 kb on - strand, within AO353_24800 at 5468.038 kb on - strand, within AO353_24800 at 5468.038 kb on - strand, within AO353_24800 at 5468.038 kb on - strand, within AO353_24800 at 5468.178 kb on + strand, within AO353_24800 at 5468.346 kb on + strand, within AO353_24800 at 5468.346 kb on + strand, within AO353_24800 at 5468.346 kb on + strand, within AO353_24800 at 5468.346 kb on + strand, within AO353_24800 at 5468.346 kb on + strand, within AO353_24800 at 5468.346 kb on + strand, within AO353_24800 at 5468.346 kb on + strand, within AO353_24800 at 5468.347 kb on - strand, within AO353_24800 at 5468.347 kb on - strand, within AO353_24800 at 5468.365 kb on - strand, within AO353_24800 at 5468.379 kb on - strand, within AO353_24800 at 5468.529 kb on + strand at 5468.529 kb on + strand at 5468.529 kb on + strand at 5468.529 kb on + strand at 5468.530 kb on - strand at 5468.608 kb on - strand at 5468.617 kb on + strand at 5468.836 kb on - strand, within AO353_24805 at 5468.836 kb on - strand, within AO353_24805 at 5468.868 kb on + strand, within AO353_24805 at 5468.868 kb on + strand, within AO353_24805 at 5468.868 kb on + strand, within AO353_24805 at 5468.868 kb on + strand, within AO353_24805 at 5468.868 kb on + strand, within AO353_24805 at 5468.868 kb on + strand, within AO353_24805 at 5468.868 kb on + strand, within AO353_24805 at 5468.869 kb on - strand, within AO353_24805 at 5468.869 kb on - strand, within AO353_24805 at 5468.869 kb on - strand, within AO353_24805 at 5468.869 kb on - strand, within AO353_24805 at 5468.869 kb on - strand, within AO353_24805 at 5468.869 kb on - strand, within AO353_24805 at 5468.869 kb on - strand, within AO353_24805 at 5469.073 kb on - strand, within AO353_24805 at 5469.073 kb on - strand, within AO353_24805 at 5469.091 kb on + strand, within AO353_24805 at 5469.091 kb on + strand, within AO353_24805 at 5469.092 kb on - strand, within AO353_24805 at 5469.103 kb on + strand, within AO353_24805 at 5469.104 kb on - strand, within AO353_24805 at 5469.224 kb on + strand, within AO353_24805 at 5469.341 kb on - strand at 5469.371 kb on + strand at 5469.372 kb on - strand at 5469.372 kb on - strand at 5469.375 kb on - strand at 5469.396 kb on - strand at 5469.396 kb on - strand at 5469.396 kb on - strand at 5469.473 kb on + strand at 5469.473 kb on + strand at 5469.474 kb on - strand at 5469.474 kb on - strand at 5469.477 kb on + strand at 5469.477 kb on + strand at 5469.477 kb on + strand at 5469.478 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Aspartic Acid (C) remove 5,466,501 + AO353_24795 0.61 +0.7 5,466,501 + AO353_24795 0.61 -1.1 5,466,501 + AO353_24795 0.61 -0.1 5,466,502 - AO353_24795 0.61 -0.8 5,466,681 + AO353_24795 0.70 -0.5 5,466,733 - AO353_24795 0.73 -1.8 5,466,777 + AO353_24795 0.75 -0.1 5,466,888 + AO353_24795 0.81 -1.0 5,466,888 + AO353_24795 0.81 -0.4 5,466,889 - AO353_24795 0.81 -1.9 5,467,122 + -0.7 5,467,122 + +0.0 5,467,123 - -0.5 5,467,330 - +0.8 5,467,384 + -0.8 5,467,384 + -0.1 5,467,384 + -0.4 5,467,385 - -0.0 5,467,385 - -1.2 5,467,427 + -1.3 5,467,427 + -0.7 5,467,428 - +0.5 5,467,580 - -0.1 5,467,580 - -0.7 5,467,580 - -2.4 5,467,580 - -0.0 5,467,580 - +0.8 5,467,671 + AO353_24800 0.18 +1.8 5,467,671 + AO353_24800 0.18 -1.1 5,467,671 + AO353_24800 0.18 +0.5 5,467,672 - AO353_24800 0.18 +0.5 5,467,672 - AO353_24800 0.18 +0.5 5,467,782 + AO353_24800 0.29 +2.1 5,467,782 + AO353_24800 0.29 +0.9 5,467,782 + AO353_24800 0.29 +0.8 5,467,782 + AO353_24800 0.29 +0.9 5,467,782 + AO353_24800 0.29 +1.5 5,467,783 - AO353_24800 0.29 -1.5 5,467,887 + AO353_24800 0.39 -1.4 5,467,986 + AO353_24800 0.48 +0.3 5,467,986 + AO353_24800 0.48 +0.0 5,468,037 + AO353_24800 0.53 +0.1 5,468,037 + AO353_24800 0.53 +0.2 5,468,037 + AO353_24800 0.53 -0.5 5,468,037 + AO353_24800 0.53 +0.7 5,468,038 - AO353_24800 0.53 +0.3 5,468,038 - AO353_24800 0.53 -0.6 5,468,038 - AO353_24800 0.53 +0.8 5,468,038 - AO353_24800 0.53 -0.0 5,468,038 - AO353_24800 0.53 +1.2 5,468,038 - AO353_24800 0.53 -0.4 5,468,178 + AO353_24800 0.66 -0.5 5,468,346 + AO353_24800 0.82 -1.3 5,468,346 + AO353_24800 0.82 +0.8 5,468,346 + AO353_24800 0.82 -1.2 5,468,346 + AO353_24800 0.82 -0.6 5,468,346 + AO353_24800 0.82 -0.2 5,468,346 + AO353_24800 0.82 +1.5 5,468,346 + AO353_24800 0.82 +0.9 5,468,347 - AO353_24800 0.82 -0.8 5,468,347 - AO353_24800 0.82 +0.9 5,468,365 - AO353_24800 0.84 +0.7 5,468,379 - AO353_24800 0.85 +1.3 5,468,529 + -0.8 5,468,529 + -0.3 5,468,529 + +0.2 5,468,529 + -1.1 5,468,530 - -0.7 5,468,608 - -0.8 5,468,617 + -0.4 5,468,836 - AO353_24805 0.25 +0.9 5,468,836 - AO353_24805 0.25 -1.3 5,468,868 + AO353_24805 0.30 -0.1 5,468,868 + AO353_24805 0.30 +0.5 5,468,868 + AO353_24805 0.30 +0.3 5,468,868 + AO353_24805 0.30 -0.8 5,468,868 + AO353_24805 0.30 +0.3 5,468,868 + AO353_24805 0.30 -1.7 5,468,868 + AO353_24805 0.30 -0.8 5,468,869 - AO353_24805 0.30 -0.1 5,468,869 - AO353_24805 0.30 +0.2 5,468,869 - AO353_24805 0.30 +1.5 5,468,869 - AO353_24805 0.30 +1.5 5,468,869 - AO353_24805 0.30 -2.4 5,468,869 - AO353_24805 0.30 +1.0 5,468,869 - AO353_24805 0.30 -0.0 5,469,073 - AO353_24805 0.62 -0.5 5,469,073 - AO353_24805 0.62 -0.6 5,469,091 + AO353_24805 0.65 -0.8 5,469,091 + AO353_24805 0.65 -0.8 5,469,092 - AO353_24805 0.65 +0.2 5,469,103 + AO353_24805 0.66 -0.1 5,469,104 - AO353_24805 0.67 -0.5 5,469,224 + AO353_24805 0.85 -0.8 5,469,341 - -0.5 5,469,371 + -0.7 5,469,372 - +0.8 5,469,372 - -0.7 5,469,375 - -0.3 5,469,396 - +1.5 5,469,396 - -1.1 5,469,396 - +0.5 5,469,473 + -0.2 5,469,473 + -0.1 5,469,474 - +0.2 5,469,474 - -0.1 5,469,477 + -0.0 5,469,477 + -1.0 5,469,477 + -0.1 5,469,478 - -0.5
Or see this region's nucleotide sequence