Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_24745

Experiment: L-Aspartic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_24735 and AO353_24740 are separated by 305 nucleotidesAO353_24740 and AO353_24745 are separated by 9 nucleotidesAO353_24745 and AO353_24750 are separated by 280 nucleotides AO353_24735: AO353_24735 - hypothetical protein, at 5,452,686 to 5,453,108 _24735 AO353_24740: AO353_24740 - hypothetical protein, at 5,453,414 to 5,453,800 _24740 AO353_24745: AO353_24745 - hypothetical protein, at 5,453,810 to 5,454,034 _24745 AO353_24750: AO353_24750 - DNA damage response nuclease (from data), at 5,454,315 to 5,455,967 _24750 Position (kb) 5453 5454 5455Strain fitness (log2 ratio) -2 -1 0 1 2at 5452.921 kb on + strand, within AO353_24735at 5452.921 kb on + strand, within AO353_24735at 5452.922 kb on - strand, within AO353_24735at 5452.947 kb on + strand, within AO353_24735at 5452.948 kb on - strand, within AO353_24735at 5452.997 kb on - strand, within AO353_24735at 5453.019 kb on - strand, within AO353_24735at 5453.044 kb on - strand, within AO353_24735at 5453.118 kb on + strandat 5453.118 kb on + strandat 5453.118 kb on + strandat 5453.136 kb on - strandat 5453.271 kb on + strandat 5453.272 kb on - strandat 5453.272 kb on - strandat 5453.321 kb on - strandat 5453.321 kb on - strandat 5453.339 kb on + strandat 5453.339 kb on + strandat 5453.339 kb on + strandat 5453.339 kb on + strandat 5453.339 kb on + strandat 5453.340 kb on - strandat 5453.340 kb on - strandat 5453.419 kb on + strandat 5453.419 kb on + strandat 5453.513 kb on + strand, within AO353_24740at 5453.520 kb on + strand, within AO353_24740at 5453.521 kb on - strand, within AO353_24740at 5453.662 kb on + strand, within AO353_24740at 5453.663 kb on - strand, within AO353_24740at 5453.663 kb on - strand, within AO353_24740at 5453.693 kb on + strand, within AO353_24740at 5453.931 kb on + strand, within AO353_24745at 5453.931 kb on + strand, within AO353_24745at 5453.982 kb on - strand, within AO353_24745at 5454.023 kb on - strandat 5454.023 kb on - strandat 5454.029 kb on - strandat 5454.038 kb on + strandat 5454.039 kb on - strandat 5454.039 kb on - strandat 5454.050 kb on - strandat 5454.050 kb on - strandat 5454.178 kb on + strandat 5454.178 kb on + strandat 5454.179 kb on - strandat 5454.179 kb on - strandat 5454.179 kb on - strandat 5454.179 kb on - strandat 5454.215 kb on - strandat 5454.311 kb on - strandat 5454.345 kb on + strandat 5454.345 kb on + strandat 5454.345 kb on + strandat 5454.345 kb on + strandat 5454.346 kb on - strandat 5454.346 kb on - strandat 5454.346 kb on - strandat 5454.348 kb on + strandat 5454.349 kb on - strandat 5454.349 kb on - strandat 5454.349 kb on - strandat 5454.393 kb on + strandat 5454.393 kb on + strandat 5454.394 kb on - strandat 5454.525 kb on + strand, within AO353_24750at 5454.535 kb on + strand, within AO353_24750at 5454.633 kb on - strand, within AO353_24750at 5454.633 kb on - strand, within AO353_24750at 5454.878 kb on + strand, within AO353_24750at 5454.878 kb on + strand, within AO353_24750at 5454.878 kb on + strand, within AO353_24750at 5454.879 kb on - strand, within AO353_24750at 5454.882 kb on + strand, within AO353_24750at 5454.951 kb on + strand, within AO353_24750at 5454.952 kb on - strand, within AO353_24750at 5454.952 kb on - strand, within AO353_24750at 5454.952 kb on - strand, within AO353_24750at 5454.952 kb on - strand, within AO353_24750at 5454.952 kb on - strand, within AO353_24750

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
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5,452,921 + AO353_24735 0.56 -0.0
5,452,921 + AO353_24735 0.56 -0.8
5,452,922 - AO353_24735 0.56 +1.1
5,452,947 + AO353_24735 0.62 -0.3
5,452,948 - AO353_24735 0.62 -1.7
5,452,997 - AO353_24735 0.74 -0.2
5,453,019 - AO353_24735 0.79 -0.1
5,453,044 - AO353_24735 0.85 -0.4
5,453,118 + +0.5
5,453,118 + -1.2
5,453,118 + +0.3
5,453,136 - -1.3
5,453,271 + -2.0
5,453,272 - -1.3
5,453,272 - +1.3
5,453,321 - -0.9
5,453,321 - -0.5
5,453,339 + -0.8
5,453,339 + -1.3
5,453,339 + +0.5
5,453,339 + -0.1
5,453,339 + +2.1
5,453,340 - -0.1
5,453,340 - -2.1
5,453,419 + +0.2
5,453,419 + -1.1
5,453,513 + AO353_24740 0.26 +0.5
5,453,520 + AO353_24740 0.27 -0.3
5,453,521 - AO353_24740 0.28 +0.3
5,453,662 + AO353_24740 0.64 +0.1
5,453,663 - AO353_24740 0.64 +0.9
5,453,663 - AO353_24740 0.64 +0.1
5,453,693 + AO353_24740 0.72 -0.6
5,453,931 + AO353_24745 0.54 -0.8
5,453,931 + AO353_24745 0.54 -0.1
5,453,982 - AO353_24745 0.76 -1.0
5,454,023 - +0.1
5,454,023 - -0.5
5,454,029 - -0.5
5,454,038 + +2.5
5,454,039 - +2.1
5,454,039 - -1.5
5,454,050 - -1.5
5,454,050 - -0.8
5,454,178 + +1.1
5,454,178 + -0.1
5,454,179 - -0.5
5,454,179 - -0.4
5,454,179 - +0.9
5,454,179 - -1.6
5,454,215 - -2.0
5,454,311 - +1.0
5,454,345 + -2.1
5,454,345 + -1.0
5,454,345 + -0.2
5,454,345 + -0.4
5,454,346 - +0.5
5,454,346 - +0.4
5,454,346 - -0.1
5,454,348 + +0.5
5,454,349 - -1.4
5,454,349 - -0.5
5,454,349 - +0.2
5,454,393 + -1.8
5,454,393 + +0.0
5,454,394 - -0.5
5,454,525 + AO353_24750 0.13 -0.1
5,454,535 + AO353_24750 0.13 -1.2
5,454,633 - AO353_24750 0.19 +0.1
5,454,633 - AO353_24750 0.19 -0.5
5,454,878 + AO353_24750 0.34 -0.4
5,454,878 + AO353_24750 0.34 -0.8
5,454,878 + AO353_24750 0.34 -1.0
5,454,879 - AO353_24750 0.34 +0.8
5,454,882 + AO353_24750 0.34 +0.2
5,454,951 + AO353_24750 0.38 +0.1
5,454,952 - AO353_24750 0.39 -1.3
5,454,952 - AO353_24750 0.39 -1.4
5,454,952 - AO353_24750 0.39 +0.1
5,454,952 - AO353_24750 0.39 -1.5
5,454,952 - AO353_24750 0.39 -1.0

Or see this region's nucleotide sequence