Experiment: L-Aspartic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_24735 and AO353_24740 are separated by 305 nucleotides AO353_24740 and AO353_24745 are separated by 9 nucleotides AO353_24745 and AO353_24750 are separated by 280 nucleotides
AO353_24735: AO353_24735 - hypothetical protein, at 5,452,686 to 5,453,108
_24735
AO353_24740: AO353_24740 - hypothetical protein, at 5,453,414 to 5,453,800
_24740
AO353_24745: AO353_24745 - hypothetical protein, at 5,453,810 to 5,454,034
_24745
AO353_24750: AO353_24750 - DNA damage response nuclease (from data) , at 5,454,315 to 5,455,967
_24750
Position (kb)
5453
5454
5455 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 5452.921 kb on + strand, within AO353_24735 at 5452.921 kb on + strand, within AO353_24735 at 5452.922 kb on - strand, within AO353_24735 at 5452.947 kb on + strand, within AO353_24735 at 5452.948 kb on - strand, within AO353_24735 at 5452.997 kb on - strand, within AO353_24735 at 5453.019 kb on - strand, within AO353_24735 at 5453.044 kb on - strand, within AO353_24735 at 5453.118 kb on + strand at 5453.118 kb on + strand at 5453.118 kb on + strand at 5453.136 kb on - strand at 5453.271 kb on + strand at 5453.272 kb on - strand at 5453.272 kb on - strand at 5453.321 kb on - strand at 5453.321 kb on - strand at 5453.339 kb on + strand at 5453.339 kb on + strand at 5453.339 kb on + strand at 5453.339 kb on + strand at 5453.339 kb on + strand at 5453.340 kb on - strand at 5453.340 kb on - strand at 5453.419 kb on + strand at 5453.419 kb on + strand at 5453.513 kb on + strand, within AO353_24740 at 5453.520 kb on + strand, within AO353_24740 at 5453.521 kb on - strand, within AO353_24740 at 5453.662 kb on + strand, within AO353_24740 at 5453.663 kb on - strand, within AO353_24740 at 5453.663 kb on - strand, within AO353_24740 at 5453.693 kb on + strand, within AO353_24740 at 5453.931 kb on + strand, within AO353_24745 at 5453.931 kb on + strand, within AO353_24745 at 5453.982 kb on - strand, within AO353_24745 at 5454.023 kb on - strand at 5454.023 kb on - strand at 5454.029 kb on - strand at 5454.038 kb on + strand at 5454.039 kb on - strand at 5454.039 kb on - strand at 5454.050 kb on - strand at 5454.050 kb on - strand at 5454.178 kb on + strand at 5454.178 kb on + strand at 5454.179 kb on - strand at 5454.179 kb on - strand at 5454.179 kb on - strand at 5454.179 kb on - strand at 5454.215 kb on - strand at 5454.311 kb on - strand at 5454.345 kb on + strand at 5454.345 kb on + strand at 5454.345 kb on + strand at 5454.345 kb on + strand at 5454.346 kb on - strand at 5454.346 kb on - strand at 5454.346 kb on - strand at 5454.348 kb on + strand at 5454.349 kb on - strand at 5454.349 kb on - strand at 5454.349 kb on - strand at 5454.393 kb on + strand at 5454.393 kb on + strand at 5454.394 kb on - strand at 5454.525 kb on + strand, within AO353_24750 at 5454.535 kb on + strand, within AO353_24750 at 5454.633 kb on - strand, within AO353_24750 at 5454.633 kb on - strand, within AO353_24750 at 5454.878 kb on + strand, within AO353_24750 at 5454.878 kb on + strand, within AO353_24750 at 5454.878 kb on + strand, within AO353_24750 at 5454.879 kb on - strand, within AO353_24750 at 5454.882 kb on + strand, within AO353_24750 at 5454.951 kb on + strand, within AO353_24750 at 5454.952 kb on - strand, within AO353_24750 at 5454.952 kb on - strand, within AO353_24750 at 5454.952 kb on - strand, within AO353_24750 at 5454.952 kb on - strand, within AO353_24750 at 5454.952 kb on - strand, within AO353_24750
Per-strain Table
Position Strand Gene LocusTag Fraction L-Aspartic Acid (C) remove 5,452,921 + AO353_24735 0.56 -0.0 5,452,921 + AO353_24735 0.56 -0.8 5,452,922 - AO353_24735 0.56 +1.1 5,452,947 + AO353_24735 0.62 -0.3 5,452,948 - AO353_24735 0.62 -1.7 5,452,997 - AO353_24735 0.74 -0.2 5,453,019 - AO353_24735 0.79 -0.1 5,453,044 - AO353_24735 0.85 -0.4 5,453,118 + +0.5 5,453,118 + -1.2 5,453,118 + +0.3 5,453,136 - -1.3 5,453,271 + -2.0 5,453,272 - -1.3 5,453,272 - +1.3 5,453,321 - -0.9 5,453,321 - -0.5 5,453,339 + -0.8 5,453,339 + -1.3 5,453,339 + +0.5 5,453,339 + -0.1 5,453,339 + +2.1 5,453,340 - -0.1 5,453,340 - -2.1 5,453,419 + +0.2 5,453,419 + -1.1 5,453,513 + AO353_24740 0.26 +0.5 5,453,520 + AO353_24740 0.27 -0.3 5,453,521 - AO353_24740 0.28 +0.3 5,453,662 + AO353_24740 0.64 +0.1 5,453,663 - AO353_24740 0.64 +0.9 5,453,663 - AO353_24740 0.64 +0.1 5,453,693 + AO353_24740 0.72 -0.6 5,453,931 + AO353_24745 0.54 -0.8 5,453,931 + AO353_24745 0.54 -0.1 5,453,982 - AO353_24745 0.76 -1.0 5,454,023 - +0.1 5,454,023 - -0.5 5,454,029 - -0.5 5,454,038 + +2.5 5,454,039 - +2.1 5,454,039 - -1.5 5,454,050 - -1.5 5,454,050 - -0.8 5,454,178 + +1.1 5,454,178 + -0.1 5,454,179 - -0.5 5,454,179 - -0.4 5,454,179 - +0.9 5,454,179 - -1.6 5,454,215 - -2.0 5,454,311 - +1.0 5,454,345 + -2.1 5,454,345 + -1.0 5,454,345 + -0.2 5,454,345 + -0.4 5,454,346 - +0.5 5,454,346 - +0.4 5,454,346 - -0.1 5,454,348 + +0.5 5,454,349 - -1.4 5,454,349 - -0.5 5,454,349 - +0.2 5,454,393 + -1.8 5,454,393 + +0.0 5,454,394 - -0.5 5,454,525 + AO353_24750 0.13 -0.1 5,454,535 + AO353_24750 0.13 -1.2 5,454,633 - AO353_24750 0.19 +0.1 5,454,633 - AO353_24750 0.19 -0.5 5,454,878 + AO353_24750 0.34 -0.4 5,454,878 + AO353_24750 0.34 -0.8 5,454,878 + AO353_24750 0.34 -1.0 5,454,879 - AO353_24750 0.34 +0.8 5,454,882 + AO353_24750 0.34 +0.2 5,454,951 + AO353_24750 0.38 +0.1 5,454,952 - AO353_24750 0.39 -1.3 5,454,952 - AO353_24750 0.39 -1.4 5,454,952 - AO353_24750 0.39 +0.1 5,454,952 - AO353_24750 0.39 -1.5 5,454,952 - AO353_24750 0.39 -1.0
Or see this region's nucleotide sequence