Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_24415

Experiment: L-Aspartic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_24410 and AO353_24415 are separated by 46 nucleotidesAO353_24415 and AO353_24420 overlap by 17 nucleotidesAO353_24420 and AO353_24425 are separated by 10 nucleotides AO353_24410: AO353_24410 - amino acid ABC transporter substrate-binding protein, at 5,366,685 to 5,367,506 _24410 AO353_24415: AO353_24415 - glutamine ABC transporter ATP-binding protein, at 5,367,553 to 5,368,356 _24415 AO353_24420: AO353_24420 - amino acid ABC transporter permease, at 5,368,340 to 5,369,008 _24420 AO353_24425: AO353_24425 - amino acid ABC transporter permease, at 5,369,019 to 5,369,684 _24425 Position (kb) 5367 5368 5369Strain fitness (log2 ratio) -2 -1 0 1 2at 5366.616 kb on + strandat 5366.616 kb on + strandat 5366.678 kb on + strandat 5366.699 kb on + strandat 5366.699 kb on + strandat 5366.699 kb on + strandat 5366.700 kb on - strandat 5366.700 kb on - strandat 5366.700 kb on - strandat 5366.731 kb on + strandat 5366.731 kb on + strandat 5366.731 kb on + strandat 5366.731 kb on + strandat 5366.732 kb on - strandat 5366.732 kb on - strandat 5366.732 kb on - strandat 5366.732 kb on - strandat 5366.732 kb on - strandat 5366.732 kb on - strandat 5366.734 kb on + strandat 5366.735 kb on - strandat 5366.735 kb on - strandat 5366.847 kb on + strand, within AO353_24410at 5366.847 kb on + strand, within AO353_24410at 5366.847 kb on + strand, within AO353_24410at 5366.848 kb on - strand, within AO353_24410at 5366.848 kb on - strand, within AO353_24410at 5366.848 kb on - strand, within AO353_24410at 5366.848 kb on - strandat 5366.848 kb on - strand, within AO353_24410at 5366.848 kb on - strand, within AO353_24410at 5366.877 kb on + strand, within AO353_24410at 5366.921 kb on - strand, within AO353_24410at 5366.921 kb on - strand, within AO353_24410at 5366.968 kb on + strand, within AO353_24410at 5366.969 kb on - strand, within AO353_24410at 5367.011 kb on + strand, within AO353_24410at 5367.011 kb on + strand, within AO353_24410at 5367.011 kb on + strand, within AO353_24410at 5367.011 kb on + strand, within AO353_24410at 5367.011 kb on + strand, within AO353_24410at 5367.012 kb on - strand, within AO353_24410at 5367.012 kb on - strand, within AO353_24410at 5367.012 kb on - strand, within AO353_24410at 5367.084 kb on + strand, within AO353_24410at 5367.085 kb on - strand, within AO353_24410at 5367.085 kb on - strand, within AO353_24410at 5367.116 kb on + strand, within AO353_24410at 5367.183 kb on - strand, within AO353_24410at 5367.183 kb on - strand, within AO353_24410at 5367.258 kb on - strand, within AO353_24410at 5367.288 kb on - strand, within AO353_24410at 5367.300 kb on - strand, within AO353_24410at 5367.300 kb on - strand, within AO353_24410at 5367.337 kb on + strand, within AO353_24410at 5367.337 kb on + strand, within AO353_24410at 5367.337 kb on + strand, within AO353_24410at 5367.353 kb on - strand, within AO353_24410at 5367.398 kb on + strand, within AO353_24410at 5367.405 kb on + strand, within AO353_24410at 5367.405 kb on + strand, within AO353_24410at 5367.432 kb on + strandat 5367.433 kb on - strandat 5367.434 kb on + strandat 5367.462 kb on - strandat 5367.485 kb on + strandat 5367.505 kb on - strandat 5367.523 kb on - strandat 5367.601 kb on + strandat 5367.614 kb on + strandat 5367.707 kb on + strand, within AO353_24415at 5367.783 kb on + strand, within AO353_24415at 5368.044 kb on - strand, within AO353_24415at 5368.081 kb on - strand, within AO353_24415at 5368.128 kb on + strand, within AO353_24415at 5368.164 kb on - strand, within AO353_24415at 5368.298 kb on + strandat 5368.298 kb on + strandat 5368.347 kb on - strandat 5368.440 kb on + strand, within AO353_24420at 5368.441 kb on - strand, within AO353_24420at 5368.441 kb on - strand, within AO353_24420at 5368.441 kb on - strand, within AO353_24420at 5368.537 kb on + strand, within AO353_24420at 5368.537 kb on + strand, within AO353_24420at 5368.578 kb on + strand, within AO353_24420at 5368.579 kb on - strand, within AO353_24420at 5368.598 kb on + strand, within AO353_24420at 5368.598 kb on + strand, within AO353_24420at 5368.599 kb on - strand, within AO353_24420at 5368.599 kb on - strand, within AO353_24420at 5368.603 kb on - strand, within AO353_24420at 5368.639 kb on + strand, within AO353_24420at 5368.667 kb on + strand, within AO353_24420at 5368.667 kb on + strand, within AO353_24420at 5368.697 kb on - strand, within AO353_24420at 5368.751 kb on + strand, within AO353_24420at 5368.752 kb on - strand, within AO353_24420at 5368.752 kb on - strand, within AO353_24420at 5368.755 kb on + strand, within AO353_24420at 5368.755 kb on + strand, within AO353_24420at 5368.861 kb on + strand, within AO353_24420at 5368.861 kb on + strand, within AO353_24420at 5368.861 kb on + strand, within AO353_24420at 5368.862 kb on - strand, within AO353_24420at 5368.865 kb on + strand, within AO353_24420at 5368.866 kb on - strand, within AO353_24420at 5368.866 kb on - strand, within AO353_24420at 5368.866 kb on - strand, within AO353_24420at 5368.866 kb on - strand, within AO353_24420at 5368.896 kb on - strand, within AO353_24420at 5368.896 kb on - strand, within AO353_24420at 5368.934 kb on + strand, within AO353_24420at 5368.974 kb on - strandat 5368.977 kb on + strandat 5368.977 kb on + strandat 5368.978 kb on - strandat 5369.050 kb on - strandat 5369.063 kb on - strandat 5369.190 kb on + strand, within AO353_24425at 5369.191 kb on - strand, within AO353_24425at 5369.314 kb on - strand, within AO353_24425

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
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5,366,616 + +0.6
5,366,616 + +1.1
5,366,678 + -1.1
5,366,699 + -1.4
5,366,699 + -1.7
5,366,699 + -0.2
5,366,700 - -2.2
5,366,700 - -1.5
5,366,700 - -0.1
5,366,731 + -0.3
5,366,731 + -0.1
5,366,731 + -0.3
5,366,731 + -0.7
5,366,732 - -0.3
5,366,732 - +1.0
5,366,732 - +1.9
5,366,732 - -0.0
5,366,732 - -1.7
5,366,732 - -0.6
5,366,734 + +1.5
5,366,735 - +0.4
5,366,735 - -0.4
5,366,847 + AO353_24410 0.20 -0.3
5,366,847 + AO353_24410 0.20 +1.2
5,366,847 + AO353_24410 0.20 -0.8
5,366,848 - AO353_24410 0.20 +1.1
5,366,848 - AO353_24410 0.20 -1.2
5,366,848 - AO353_24410 0.20 +0.7
5,366,848 - +1.9
5,366,848 - AO353_24410 0.20 -0.2
5,366,848 - AO353_24410 0.20 -0.7
5,366,877 + AO353_24410 0.23 -0.1
5,366,921 - AO353_24410 0.29 +0.0
5,366,921 - AO353_24410 0.29 +0.3
5,366,968 + AO353_24410 0.34 -2.4
5,366,969 - AO353_24410 0.35 -0.1
5,367,011 + AO353_24410 0.40 -1.1
5,367,011 + AO353_24410 0.40 +0.1
5,367,011 + AO353_24410 0.40 +0.8
5,367,011 + AO353_24410 0.40 +1.2
5,367,011 + AO353_24410 0.40 -0.1
5,367,012 - AO353_24410 0.40 +0.2
5,367,012 - AO353_24410 0.40 -1.2
5,367,012 - AO353_24410 0.40 -0.1
5,367,084 + AO353_24410 0.49 +0.5
5,367,085 - AO353_24410 0.49 -0.4
5,367,085 - AO353_24410 0.49 -0.3
5,367,116 + AO353_24410 0.52 +0.1
5,367,183 - AO353_24410 0.61 -1.7
5,367,183 - AO353_24410 0.61 -1.1
5,367,258 - AO353_24410 0.70 -1.1
5,367,288 - AO353_24410 0.73 +0.6
5,367,300 - AO353_24410 0.75 -0.2
5,367,300 - AO353_24410 0.75 -1.1
5,367,337 + AO353_24410 0.79 -0.5
5,367,337 + AO353_24410 0.79 -0.4
5,367,337 + AO353_24410 0.79 +0.5
5,367,353 - AO353_24410 0.81 +0.8
5,367,398 + AO353_24410 0.87 +0.3
5,367,405 + AO353_24410 0.88 +1.5
5,367,405 + AO353_24410 0.88 +0.2
5,367,432 + -0.4
5,367,433 - +0.0
5,367,434 + +0.9
5,367,462 - +0.8
5,367,485 + +1.3
5,367,505 - -0.1
5,367,523 - +0.2
5,367,601 + -0.3
5,367,614 + +0.8
5,367,707 + AO353_24415 0.19 +0.1
5,367,783 + AO353_24415 0.29 +2.2
5,368,044 - AO353_24415 0.61 -2.1
5,368,081 - AO353_24415 0.66 +0.8
5,368,128 + AO353_24415 0.72 +1.8
5,368,164 - AO353_24415 0.76 +1.5
5,368,298 + -0.5
5,368,298 + -2.0
5,368,347 - -1.6
5,368,440 + AO353_24420 0.15 +0.3
5,368,441 - AO353_24420 0.15 -0.1
5,368,441 - AO353_24420 0.15 -0.8
5,368,441 - AO353_24420 0.15 -1.7
5,368,537 + AO353_24420 0.29 -2.0
5,368,537 + AO353_24420 0.29 -0.8
5,368,578 + AO353_24420 0.36 -0.4
5,368,579 - AO353_24420 0.36 +0.5
5,368,598 + AO353_24420 0.39 +0.2
5,368,598 + AO353_24420 0.39 -0.1
5,368,599 - AO353_24420 0.39 -0.1
5,368,599 - AO353_24420 0.39 -1.7
5,368,603 - AO353_24420 0.39 -0.3
5,368,639 + AO353_24420 0.45 -0.3
5,368,667 + AO353_24420 0.49 +0.5
5,368,667 + AO353_24420 0.49 +1.2
5,368,697 - AO353_24420 0.53 -0.8
5,368,751 + AO353_24420 0.61 +0.2
5,368,752 - AO353_24420 0.62 -0.1
5,368,752 - AO353_24420 0.62 -1.0
5,368,755 + AO353_24420 0.62 -0.1
5,368,755 + AO353_24420 0.62 +0.4
5,368,861 + AO353_24420 0.78 -0.1
5,368,861 + AO353_24420 0.78 +1.1
5,368,861 + AO353_24420 0.78 -0.1
5,368,862 - AO353_24420 0.78 +0.8
5,368,865 + AO353_24420 0.78 -0.1
5,368,866 - AO353_24420 0.79 -1.5
5,368,866 - AO353_24420 0.79 -1.3
5,368,866 - AO353_24420 0.79 -0.4
5,368,866 - AO353_24420 0.79 +0.1
5,368,896 - AO353_24420 0.83 -0.5
5,368,896 - AO353_24420 0.83 +1.5
5,368,934 + AO353_24420 0.89 -0.8
5,368,974 - +0.3
5,368,977 + -0.6
5,368,977 + +0.1
5,368,978 - -0.1
5,369,050 - -1.3
5,369,063 - -0.5
5,369,190 + AO353_24425 0.26 -2.5
5,369,191 - AO353_24425 0.26 +1.2
5,369,314 - AO353_24425 0.44 -1.7

Or see this region's nucleotide sequence