Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_23610

Experiment: L-Aspartic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_23600 and AO353_23605 are separated by 101 nucleotidesAO353_23605 and AO353_23610 overlap by 1 nucleotidesAO353_23610 and AO353_23615 overlap by 4 nucleotidesAO353_23615 and AO353_23620 are separated by 44 nucleotides AO353_23600: AO353_23600 - cobalt chelatase, at 5,167,132 to 5,168,082 _23600 AO353_23605: AO353_23605 - NAD kinase, at 5,168,184 to 5,169,074 _23605 AO353_23610: AO353_23610 - serine/threonine protein phosphatase, at 5,169,074 to 5,170,045 _23610 AO353_23615: AO353_23615 - peptidase S54, at 5,170,042 to 5,170,917 _23615 AO353_23620: AO353_23620 - hypothetical protein, at 5,170,962 to 5,171,222 _23620 Position (kb) 5169 5170 5171Strain fitness (log2 ratio) -2 -1 0 1 2at 5168.074 kb on + strandat 5168.074 kb on + strandat 5168.074 kb on + strandat 5168.074 kb on + strandat 5168.074 kb on + strandat 5168.075 kb on - strandat 5168.075 kb on - strandat 5168.075 kb on - strandat 5168.075 kb on - strandat 5168.075 kb on - strandat 5168.075 kb on - strandat 5168.075 kb on - strandat 5168.167 kb on + strandat 5168.167 kb on + strandat 5169.091 kb on + strandat 5169.092 kb on - strandat 5169.092 kb on - strandat 5169.095 kb on + strandat 5169.095 kb on + strandat 5169.095 kb on + strandat 5169.095 kb on + strandat 5169.368 kb on + strand, within AO353_23610at 5169.368 kb on + strand, within AO353_23610at 5169.368 kb on + strand, within AO353_23610at 5169.368 kb on + strand, within AO353_23610at 5169.369 kb on - strand, within AO353_23610at 5169.369 kb on - strand, within AO353_23610at 5169.369 kb on - strand, within AO353_23610at 5169.369 kb on - strand, within AO353_23610at 5169.369 kb on - strand, within AO353_23610at 5169.470 kb on + strand, within AO353_23610at 5169.470 kb on + strand, within AO353_23610at 5169.471 kb on - strand, within AO353_23610at 5169.560 kb on + strand, within AO353_23610at 5169.560 kb on + strand, within AO353_23610at 5169.561 kb on - strand, within AO353_23610at 5169.561 kb on - strand, within AO353_23610at 5169.561 kb on - strand, within AO353_23610at 5169.752 kb on + strandat 5169.752 kb on + strand, within AO353_23610at 5169.752 kb on + strand, within AO353_23610at 5169.753 kb on - strand, within AO353_23610at 5169.753 kb on - strandat 5169.829 kb on + strand, within AO353_23610at 5169.829 kb on + strand, within AO353_23610at 5169.843 kb on - strand, within AO353_23610at 5169.878 kb on + strand, within AO353_23610at 5169.878 kb on + strand, within AO353_23610at 5169.932 kb on + strand, within AO353_23610at 5169.932 kb on + strand, within AO353_23610at 5169.932 kb on + strand, within AO353_23610at 5169.947 kb on + strand, within AO353_23610at 5170.061 kb on + strandat 5170.061 kb on + strandat 5170.061 kb on + strandat 5170.062 kb on - strandat 5170.062 kb on - strandat 5170.201 kb on + strand, within AO353_23615at 5170.420 kb on + strand, within AO353_23615at 5170.420 kb on + strand, within AO353_23615at 5170.421 kb on - strand, within AO353_23615at 5170.621 kb on + strand, within AO353_23615at 5170.622 kb on - strand, within AO353_23615at 5170.622 kb on - strandat 5170.630 kb on + strand, within AO353_23615at 5170.631 kb on - strand, within AO353_23615at 5170.633 kb on + strand, within AO353_23615at 5170.636 kb on + strand, within AO353_23615at 5170.706 kb on - strand, within AO353_23615at 5170.785 kb on + strand, within AO353_23615at 5170.785 kb on + strand, within AO353_23615at 5170.785 kb on + strand, within AO353_23615at 5170.785 kb on + strand, within AO353_23615at 5170.785 kb on + strand, within AO353_23615at 5170.786 kb on - strand, within AO353_23615at 5170.786 kb on - strand, within AO353_23615at 5170.786 kb on - strand, within AO353_23615at 5170.786 kb on - strand, within AO353_23615at 5170.786 kb on - strand, within AO353_23615at 5170.786 kb on - strand, within AO353_23615at 5170.786 kb on - strand, within AO353_23615at 5170.888 kb on + strandat 5170.888 kb on + strandat 5170.889 kb on - strandat 5170.889 kb on - strandat 5170.889 kb on - strandat 5170.889 kb on - strandat 5170.889 kb on - strandat 5170.927 kb on + strandat 5171.007 kb on + strand, within AO353_23620at 5171.008 kb on - strand, within AO353_23620at 5171.008 kb on - strand, within AO353_23620

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
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5,168,074 + +0.3
5,168,074 + -0.5
5,168,074 + -0.9
5,168,074 + -0.5
5,168,074 + -1.8
5,168,075 - -0.8
5,168,075 - -0.3
5,168,075 - +0.5
5,168,075 - +0.7
5,168,075 - +2.1
5,168,075 - -0.9
5,168,075 - +0.2
5,168,167 + -0.9
5,168,167 + +1.5
5,169,091 + +0.1
5,169,092 - +0.4
5,169,092 - +0.7
5,169,095 + +1.0
5,169,095 + -0.5
5,169,095 + -0.9
5,169,095 + -1.4
5,169,368 + AO353_23610 0.30 +0.3
5,169,368 + AO353_23610 0.30 -0.6
5,169,368 + AO353_23610 0.30 -0.8
5,169,368 + AO353_23610 0.30 -0.3
5,169,369 - AO353_23610 0.30 +0.4
5,169,369 - AO353_23610 0.30 +0.2
5,169,369 - AO353_23610 0.30 +0.8
5,169,369 - AO353_23610 0.30 -0.5
5,169,369 - AO353_23610 0.30 +0.7
5,169,470 + AO353_23610 0.41 +0.4
5,169,470 + AO353_23610 0.41 -1.5
5,169,471 - AO353_23610 0.41 -1.5
5,169,560 + AO353_23610 0.50 -0.3
5,169,560 + AO353_23610 0.50 +2.0
5,169,561 - AO353_23610 0.50 +0.5
5,169,561 - AO353_23610 0.50 +0.5
5,169,561 - AO353_23610 0.50 +0.5
5,169,752 + +1.0
5,169,752 + AO353_23610 0.70 +1.5
5,169,752 + AO353_23610 0.70 +0.7
5,169,753 - AO353_23610 0.70 +1.5
5,169,753 - -0.8
5,169,829 + AO353_23610 0.78 -0.9
5,169,829 + AO353_23610 0.78 +0.7
5,169,843 - AO353_23610 0.79 +1.0
5,169,878 + AO353_23610 0.83 -0.8
5,169,878 + AO353_23610 0.83 +1.3
5,169,932 + AO353_23610 0.88 -0.0
5,169,932 + AO353_23610 0.88 -0.4
5,169,932 + AO353_23610 0.88 -0.5
5,169,947 + AO353_23610 0.90 -0.0
5,170,061 + +0.2
5,170,061 + +1.1
5,170,061 + -0.9
5,170,062 - +0.5
5,170,062 - +0.1
5,170,201 + AO353_23615 0.18 +0.2
5,170,420 + AO353_23615 0.43 +0.1
5,170,420 + AO353_23615 0.43 +1.5
5,170,421 - AO353_23615 0.43 -0.3
5,170,621 + AO353_23615 0.66 -2.2
5,170,622 - AO353_23615 0.66 -1.5
5,170,622 - +1.5
5,170,630 + AO353_23615 0.67 -0.0
5,170,631 - AO353_23615 0.67 +0.5
5,170,633 + AO353_23615 0.67 -0.6
5,170,636 + AO353_23615 0.68 -0.2
5,170,706 - AO353_23615 0.76 -0.8
5,170,785 + AO353_23615 0.85 -0.8
5,170,785 + AO353_23615 0.85 -0.2
5,170,785 + AO353_23615 0.85 -0.9
5,170,785 + AO353_23615 0.85 -1.3
5,170,785 + AO353_23615 0.85 -0.0
5,170,786 - AO353_23615 0.85 +1.5
5,170,786 - AO353_23615 0.85 -0.3
5,170,786 - AO353_23615 0.85 +0.5
5,170,786 - AO353_23615 0.85 -1.8
5,170,786 - AO353_23615 0.85 -0.3
5,170,786 - AO353_23615 0.85 +0.1
5,170,786 - AO353_23615 0.85 +1.0
5,170,888 + -1.3
5,170,888 + +0.0
5,170,889 - -0.5
5,170,889 - -0.7
5,170,889 - -0.9
5,170,889 - -0.7
5,170,889 - +0.5
5,170,927 + +0.1
5,171,007 + AO353_23620 0.17 -1.8
5,171,008 - AO353_23620 0.18 +0.8
5,171,008 - AO353_23620 0.18 -1.6

Or see this region's nucleotide sequence