Experiment: L-Aspartic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_23495 and AO353_23500 are separated by 91 nucleotides AO353_23500 and AO353_23505 are separated by 9 nucleotides AO353_23505 and AO353_23510 are separated by 107 nucleotides AO353_23510 and AO353_23515 are separated by 127 nucleotides
AO353_23495: AO353_23495 - SAM-dependent methyltransferase, at 5,147,831 to 5,148,589
_23495
AO353_23500: AO353_23500 - ribonuclease H, at 5,148,681 to 5,149,133
_23500
AO353_23505: AO353_23505 - hypothetical protein, at 5,149,143 to 5,149,457
_23505
AO353_23510: AO353_23510 - transcriptional regulator, at 5,149,565 to 5,150,455
_23510
AO353_23515: AO353_23515 - muconate cycloisomerase, at 5,150,583 to 5,151,731
_23515
Position (kb)
5149
5150
5151 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 5148.590 kb on + strand at 5148.591 kb on - strand at 5148.599 kb on + strand at 5148.599 kb on + strand at 5148.600 kb on - strand at 5148.600 kb on - strand at 5148.694 kb on + strand at 5148.694 kb on + strand at 5148.694 kb on + strand at 5148.695 kb on - strand at 5148.695 kb on - strand at 5148.695 kb on - strand at 5148.874 kb on + strand, within AO353_23500 at 5148.897 kb on + strand, within AO353_23500 at 5149.119 kb on + strand at 5149.119 kb on + strand at 5149.184 kb on - strand, within AO353_23505 at 5149.328 kb on + strand, within AO353_23505 at 5149.328 kb on + strand, within AO353_23505 at 5149.434 kb on + strand at 5149.434 kb on + strand at 5149.434 kb on + strand at 5149.435 kb on - strand at 5149.435 kb on - strand at 5149.435 kb on - strand at 5149.435 kb on - strand at 5149.436 kb on + strand at 5149.436 kb on + strand at 5149.436 kb on + strand at 5149.437 kb on - strand at 5149.482 kb on + strand at 5149.524 kb on + strand at 5149.524 kb on + strand at 5149.525 kb on - strand at 5149.525 kb on - strand at 5149.525 kb on - strand at 5149.546 kb on + strand at 5149.821 kb on + strand, within AO353_23510 at 5149.854 kb on + strand, within AO353_23510 at 5149.854 kb on + strand, within AO353_23510 at 5149.854 kb on + strand, within AO353_23510 at 5149.855 kb on - strand, within AO353_23510 at 5149.855 kb on - strand, within AO353_23510 at 5149.879 kb on - strand, within AO353_23510 at 5149.979 kb on + strand, within AO353_23510 at 5150.008 kb on + strand, within AO353_23510 at 5150.035 kb on + strand, within AO353_23510 at 5150.036 kb on - strand, within AO353_23510 at 5150.152 kb on - strand, within AO353_23510 at 5150.434 kb on - strand at 5150.434 kb on - strand at 5150.513 kb on + strand at 5150.514 kb on - strand at 5150.514 kb on - strand at 5150.699 kb on - strand, within AO353_23515 at 5150.763 kb on - strand, within AO353_23515 at 5150.837 kb on + strand, within AO353_23515 at 5150.838 kb on - strand, within AO353_23515 at 5150.838 kb on - strand, within AO353_23515 at 5150.874 kb on - strand, within AO353_23515 at 5150.885 kb on + strand, within AO353_23515 at 5150.886 kb on - strand, within AO353_23515 at 5150.886 kb on - strand, within AO353_23515 at 5150.894 kb on + strand, within AO353_23515 at 5150.895 kb on - strand, within AO353_23515 at 5150.977 kb on + strand, within AO353_23515 at 5150.978 kb on - strand, within AO353_23515
Per-strain Table
Position Strand Gene LocusTag Fraction L-Aspartic Acid (C) remove 5,148,590 + +0.7 5,148,591 - -1.3 5,148,599 + +0.1 5,148,599 + -1.3 5,148,600 - +1.1 5,148,600 - -0.8 5,148,694 + -0.2 5,148,694 + -0.3 5,148,694 + -1.1 5,148,695 - +0.1 5,148,695 - -1.3 5,148,695 - -0.1 5,148,874 + AO353_23500 0.43 -1.3 5,148,897 + AO353_23500 0.48 -0.3 5,149,119 + -0.6 5,149,119 + +0.5 5,149,184 - AO353_23505 0.13 +0.8 5,149,328 + AO353_23505 0.59 +0.2 5,149,328 + AO353_23505 0.59 +0.5 5,149,434 + +1.5 5,149,434 + +0.3 5,149,434 + -0.3 5,149,435 - -1.8 5,149,435 - -2.8 5,149,435 - -0.9 5,149,435 - -0.2 5,149,436 + +2.3 5,149,436 + -0.3 5,149,436 + -0.0 5,149,437 - +1.1 5,149,482 + +0.9 5,149,524 + -0.5 5,149,524 + -0.3 5,149,525 - -1.7 5,149,525 - -0.5 5,149,525 - -1.8 5,149,546 + +0.5 5,149,821 + AO353_23510 0.29 +0.4 5,149,854 + AO353_23510 0.32 -0.6 5,149,854 + AO353_23510 0.32 +0.4 5,149,854 + AO353_23510 0.32 -0.0 5,149,855 - AO353_23510 0.33 -0.4 5,149,855 - AO353_23510 0.33 +1.2 5,149,879 - AO353_23510 0.35 +0.4 5,149,979 + AO353_23510 0.46 +0.7 5,150,008 + AO353_23510 0.50 +0.1 5,150,035 + AO353_23510 0.53 +3.5 5,150,036 - AO353_23510 0.53 -1.3 5,150,152 - AO353_23510 0.66 -1.5 5,150,434 - +0.3 5,150,434 - -0.5 5,150,513 + -1.0 5,150,514 - -0.7 5,150,514 - +1.1 5,150,699 - AO353_23515 0.10 -0.2 5,150,763 - AO353_23515 0.16 -0.3 5,150,837 + AO353_23515 0.22 -0.1 5,150,838 - AO353_23515 0.22 -1.6 5,150,838 - AO353_23515 0.22 +0.5 5,150,874 - AO353_23515 0.25 -0.5 5,150,885 + AO353_23515 0.26 +0.2 5,150,886 - AO353_23515 0.26 -0.6 5,150,886 - AO353_23515 0.26 +0.5 5,150,894 + AO353_23515 0.27 +0.1 5,150,895 - AO353_23515 0.27 -1.6 5,150,977 + AO353_23515 0.34 +0.7 5,150,978 - AO353_23515 0.34 -0.5
Or see this region's nucleotide sequence