Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_23510

Experiment: L-Aspartic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_23495 and AO353_23500 are separated by 91 nucleotidesAO353_23500 and AO353_23505 are separated by 9 nucleotidesAO353_23505 and AO353_23510 are separated by 107 nucleotidesAO353_23510 and AO353_23515 are separated by 127 nucleotides AO353_23495: AO353_23495 - SAM-dependent methyltransferase, at 5,147,831 to 5,148,589 _23495 AO353_23500: AO353_23500 - ribonuclease H, at 5,148,681 to 5,149,133 _23500 AO353_23505: AO353_23505 - hypothetical protein, at 5,149,143 to 5,149,457 _23505 AO353_23510: AO353_23510 - transcriptional regulator, at 5,149,565 to 5,150,455 _23510 AO353_23515: AO353_23515 - muconate cycloisomerase, at 5,150,583 to 5,151,731 _23515 Position (kb) 5149 5150 5151Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5148.590 kb on + strandat 5148.591 kb on - strandat 5148.599 kb on + strandat 5148.599 kb on + strandat 5148.600 kb on - strandat 5148.600 kb on - strandat 5148.694 kb on + strandat 5148.694 kb on + strandat 5148.694 kb on + strandat 5148.695 kb on - strandat 5148.695 kb on - strandat 5148.695 kb on - strandat 5148.874 kb on + strand, within AO353_23500at 5148.897 kb on + strand, within AO353_23500at 5149.119 kb on + strandat 5149.119 kb on + strandat 5149.184 kb on - strand, within AO353_23505at 5149.328 kb on + strand, within AO353_23505at 5149.328 kb on + strand, within AO353_23505at 5149.434 kb on + strandat 5149.434 kb on + strandat 5149.434 kb on + strandat 5149.435 kb on - strandat 5149.435 kb on - strandat 5149.435 kb on - strandat 5149.435 kb on - strandat 5149.436 kb on + strandat 5149.436 kb on + strandat 5149.436 kb on + strandat 5149.437 kb on - strandat 5149.482 kb on + strandat 5149.524 kb on + strandat 5149.524 kb on + strandat 5149.525 kb on - strandat 5149.525 kb on - strandat 5149.525 kb on - strandat 5149.546 kb on + strandat 5149.821 kb on + strand, within AO353_23510at 5149.854 kb on + strand, within AO353_23510at 5149.854 kb on + strand, within AO353_23510at 5149.854 kb on + strand, within AO353_23510at 5149.855 kb on - strand, within AO353_23510at 5149.855 kb on - strand, within AO353_23510at 5149.879 kb on - strand, within AO353_23510at 5149.979 kb on + strand, within AO353_23510at 5150.008 kb on + strand, within AO353_23510at 5150.035 kb on + strand, within AO353_23510at 5150.036 kb on - strand, within AO353_23510at 5150.152 kb on - strand, within AO353_23510at 5150.434 kb on - strandat 5150.434 kb on - strandat 5150.513 kb on + strandat 5150.514 kb on - strandat 5150.514 kb on - strandat 5150.699 kb on - strand, within AO353_23515at 5150.763 kb on - strand, within AO353_23515at 5150.837 kb on + strand, within AO353_23515at 5150.838 kb on - strand, within AO353_23515at 5150.838 kb on - strand, within AO353_23515at 5150.874 kb on - strand, within AO353_23515at 5150.885 kb on + strand, within AO353_23515at 5150.886 kb on - strand, within AO353_23515at 5150.886 kb on - strand, within AO353_23515at 5150.894 kb on + strand, within AO353_23515at 5150.895 kb on - strand, within AO353_23515at 5150.977 kb on + strand, within AO353_23515at 5150.978 kb on - strand, within AO353_23515

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
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5,148,590 + +0.7
5,148,591 - -1.3
5,148,599 + +0.1
5,148,599 + -1.3
5,148,600 - +1.1
5,148,600 - -0.8
5,148,694 + -0.2
5,148,694 + -0.3
5,148,694 + -1.1
5,148,695 - +0.1
5,148,695 - -1.3
5,148,695 - -0.1
5,148,874 + AO353_23500 0.43 -1.3
5,148,897 + AO353_23500 0.48 -0.3
5,149,119 + -0.6
5,149,119 + +0.5
5,149,184 - AO353_23505 0.13 +0.8
5,149,328 + AO353_23505 0.59 +0.2
5,149,328 + AO353_23505 0.59 +0.5
5,149,434 + +1.5
5,149,434 + +0.3
5,149,434 + -0.3
5,149,435 - -1.8
5,149,435 - -2.8
5,149,435 - -0.9
5,149,435 - -0.2
5,149,436 + +2.3
5,149,436 + -0.3
5,149,436 + -0.0
5,149,437 - +1.1
5,149,482 + +0.9
5,149,524 + -0.5
5,149,524 + -0.3
5,149,525 - -1.7
5,149,525 - -0.5
5,149,525 - -1.8
5,149,546 + +0.5
5,149,821 + AO353_23510 0.29 +0.4
5,149,854 + AO353_23510 0.32 -0.6
5,149,854 + AO353_23510 0.32 +0.4
5,149,854 + AO353_23510 0.32 -0.0
5,149,855 - AO353_23510 0.33 -0.4
5,149,855 - AO353_23510 0.33 +1.2
5,149,879 - AO353_23510 0.35 +0.4
5,149,979 + AO353_23510 0.46 +0.7
5,150,008 + AO353_23510 0.50 +0.1
5,150,035 + AO353_23510 0.53 +3.5
5,150,036 - AO353_23510 0.53 -1.3
5,150,152 - AO353_23510 0.66 -1.5
5,150,434 - +0.3
5,150,434 - -0.5
5,150,513 + -1.0
5,150,514 - -0.7
5,150,514 - +1.1
5,150,699 - AO353_23515 0.10 -0.2
5,150,763 - AO353_23515 0.16 -0.3
5,150,837 + AO353_23515 0.22 -0.1
5,150,838 - AO353_23515 0.22 -1.6
5,150,838 - AO353_23515 0.22 +0.5
5,150,874 - AO353_23515 0.25 -0.5
5,150,885 + AO353_23515 0.26 +0.2
5,150,886 - AO353_23515 0.26 -0.6
5,150,886 - AO353_23515 0.26 +0.5
5,150,894 + AO353_23515 0.27 +0.1
5,150,895 - AO353_23515 0.27 -1.6
5,150,977 + AO353_23515 0.34 +0.7
5,150,978 - AO353_23515 0.34 -0.5

Or see this region's nucleotide sequence