Experiment: L-Aspartic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_23485 and AO353_23490 are separated by 99 nucleotides AO353_23490 and AO353_23495 are separated by 65 nucleotides AO353_23495 and AO353_23500 are separated by 91 nucleotides AO353_23500 and AO353_23505 are separated by 9 nucleotides AO353_23505 and AO353_23510 are separated by 107 nucleotides
AO353_23485: AO353_23485 - lytic transglycosylase, at 5,145,465 to 5,146,898
_23485
AO353_23490: AO353_23490 - hydroxyacylglutathione hydrolase, at 5,146,998 to 5,147,765
_23490
AO353_23495: AO353_23495 - SAM-dependent methyltransferase, at 5,147,831 to 5,148,589
_23495
AO353_23500: AO353_23500 - ribonuclease H, at 5,148,681 to 5,149,133
_23500
AO353_23505: AO353_23505 - hypothetical protein, at 5,149,143 to 5,149,457
_23505
AO353_23510: AO353_23510 - transcriptional regulator, at 5,149,565 to 5,150,455
_23510
Position (kb)
5147
5148
5149 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 5146.881 kb on - strand at 5146.886 kb on + strand at 5146.886 kb on + strand at 5146.886 kb on + strand at 5146.886 kb on + strand at 5146.886 kb on + strand at 5146.886 kb on + strand at 5146.887 kb on - strand at 5146.887 kb on - strand at 5146.887 kb on - strand at 5146.910 kb on + strand at 5146.939 kb on + strand at 5146.987 kb on - strand at 5146.999 kb on + strand at 5147.000 kb on - strand at 5147.000 kb on - strand at 5147.000 kb on - strand at 5147.006 kb on + strand at 5147.006 kb on + strand at 5147.006 kb on + strand at 5147.076 kb on + strand, within AO353_23490 at 5147.109 kb on + strand, within AO353_23490 at 5147.109 kb on + strand, within AO353_23490 at 5147.110 kb on - strand, within AO353_23490 at 5147.123 kb on + strand, within AO353_23490 at 5147.123 kb on + strand, within AO353_23490 at 5147.123 kb on + strand, within AO353_23490 at 5147.123 kb on + strand, within AO353_23490 at 5147.124 kb on - strand, within AO353_23490 at 5147.124 kb on - strand, within AO353_23490 at 5147.124 kb on - strand, within AO353_23490 at 5147.175 kb on + strand, within AO353_23490 at 5147.176 kb on - strand, within AO353_23490 at 5147.176 kb on - strand, within AO353_23490 at 5147.260 kb on + strand, within AO353_23490 at 5147.260 kb on + strand, within AO353_23490 at 5147.260 kb on + strand, within AO353_23490 at 5147.261 kb on - strand at 5147.261 kb on - strand, within AO353_23490 at 5147.261 kb on - strand, within AO353_23490 at 5147.276 kb on - strand, within AO353_23490 at 5147.276 kb on - strand, within AO353_23490 at 5147.276 kb on - strand, within AO353_23490 at 5147.339 kb on + strand, within AO353_23490 at 5147.340 kb on - strand, within AO353_23490 at 5147.407 kb on + strand, within AO353_23490 at 5147.407 kb on + strand, within AO353_23490 at 5147.407 kb on + strand, within AO353_23490 at 5147.408 kb on - strand, within AO353_23490 at 5147.408 kb on - strand, within AO353_23490 at 5147.408 kb on - strand, within AO353_23490 at 5147.408 kb on - strand, within AO353_23490 at 5147.410 kb on + strand, within AO353_23490 at 5147.411 kb on - strand, within AO353_23490 at 5147.411 kb on - strand, within AO353_23490 at 5147.411 kb on - strand, within AO353_23490 at 5147.446 kb on + strand, within AO353_23490 at 5147.447 kb on - strand, within AO353_23490 at 5147.469 kb on + strand, within AO353_23490 at 5147.536 kb on + strand, within AO353_23490 at 5147.712 kb on + strand at 5147.712 kb on + strand at 5147.725 kb on + strand at 5147.725 kb on + strand at 5147.725 kb on + strand at 5147.725 kb on + strand at 5147.725 kb on + strand at 5147.725 kb on + strand at 5147.725 kb on + strand at 5147.725 kb on + strand at 5147.725 kb on + strand at 5147.725 kb on + strand at 5147.725 kb on + strand at 5147.725 kb on + strand at 5147.726 kb on - strand at 5147.726 kb on - strand at 5147.726 kb on - strand at 5147.726 kb on - strand at 5147.726 kb on - strand at 5147.726 kb on - strand at 5147.760 kb on + strand at 5147.760 kb on + strand at 5147.760 kb on + strand at 5147.802 kb on + strand at 5147.802 kb on + strand at 5147.802 kb on + strand at 5147.803 kb on - strand at 5147.803 kb on - strand at 5147.803 kb on - strand at 5148.078 kb on + strand, within AO353_23495 at 5148.078 kb on + strand at 5148.464 kb on + strand, within AO353_23495 at 5148.465 kb on - strand, within AO353_23495 at 5148.465 kb on - strand, within AO353_23495 at 5148.468 kb on + strand, within AO353_23495 at 5148.590 kb on + strand at 5148.591 kb on - strand at 5148.599 kb on + strand at 5148.599 kb on + strand at 5148.600 kb on - strand at 5148.600 kb on - strand at 5148.694 kb on + strand at 5148.694 kb on + strand at 5148.694 kb on + strand at 5148.695 kb on - strand at 5148.695 kb on - strand at 5148.695 kb on - strand at 5148.874 kb on + strand, within AO353_23500 at 5148.897 kb on + strand, within AO353_23500 at 5149.119 kb on + strand at 5149.119 kb on + strand at 5149.184 kb on - strand, within AO353_23505 at 5149.328 kb on + strand, within AO353_23505 at 5149.328 kb on + strand, within AO353_23505 at 5149.434 kb on + strand at 5149.434 kb on + strand at 5149.434 kb on + strand at 5149.435 kb on - strand at 5149.435 kb on - strand at 5149.435 kb on - strand at 5149.435 kb on - strand at 5149.436 kb on + strand at 5149.436 kb on + strand at 5149.436 kb on + strand at 5149.437 kb on - strand at 5149.482 kb on + strand at 5149.524 kb on + strand at 5149.524 kb on + strand at 5149.525 kb on - strand at 5149.525 kb on - strand at 5149.525 kb on - strand at 5149.546 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Aspartic Acid (C) remove 5,146,881 - +0.5 5,146,886 + -1.3 5,146,886 + -0.4 5,146,886 + -0.3 5,146,886 + -1.3 5,146,886 + -0.5 5,146,886 + +1.0 5,146,887 - +0.2 5,146,887 - -0.3 5,146,887 - -1.0 5,146,910 + +0.8 5,146,939 + -0.8 5,146,987 - -1.5 5,146,999 + -0.3 5,147,000 - -0.2 5,147,000 - -0.5 5,147,000 - +0.5 5,147,006 + +0.3 5,147,006 + +1.2 5,147,006 + -2.2 5,147,076 + AO353_23490 0.10 -0.4 5,147,109 + AO353_23490 0.14 +0.0 5,147,109 + AO353_23490 0.14 -1.4 5,147,110 - AO353_23490 0.15 +0.4 5,147,123 + AO353_23490 0.16 +1.3 5,147,123 + AO353_23490 0.16 +0.7 5,147,123 + AO353_23490 0.16 +0.5 5,147,123 + AO353_23490 0.16 +0.3 5,147,124 - AO353_23490 0.16 -0.4 5,147,124 - AO353_23490 0.16 -1.1 5,147,124 - AO353_23490 0.16 -0.3 5,147,175 + AO353_23490 0.23 -0.9 5,147,176 - AO353_23490 0.23 -1.1 5,147,176 - AO353_23490 0.23 -0.5 5,147,260 + AO353_23490 0.34 -0.3 5,147,260 + AO353_23490 0.34 -0.5 5,147,260 + AO353_23490 0.34 -1.3 5,147,261 - +1.5 5,147,261 - AO353_23490 0.34 -0.7 5,147,261 - AO353_23490 0.34 -0.6 5,147,276 - AO353_23490 0.36 -0.3 5,147,276 - AO353_23490 0.36 -0.6 5,147,276 - AO353_23490 0.36 -0.3 5,147,339 + AO353_23490 0.44 -0.0 5,147,340 - AO353_23490 0.45 -0.6 5,147,407 + AO353_23490 0.53 +1.1 5,147,407 + AO353_23490 0.53 -1.0 5,147,407 + AO353_23490 0.53 +0.7 5,147,408 - AO353_23490 0.53 -1.1 5,147,408 - AO353_23490 0.53 -2.0 5,147,408 - AO353_23490 0.53 +0.5 5,147,408 - AO353_23490 0.53 -1.7 5,147,410 + AO353_23490 0.54 -1.0 5,147,411 - AO353_23490 0.54 +0.0 5,147,411 - AO353_23490 0.54 -0.3 5,147,411 - AO353_23490 0.54 -1.3 5,147,446 + AO353_23490 0.58 -0.5 5,147,447 - AO353_23490 0.58 +1.0 5,147,469 + AO353_23490 0.61 +0.3 5,147,536 + AO353_23490 0.70 -1.0 5,147,712 + -0.3 5,147,712 + +0.4 5,147,725 + +1.2 5,147,725 + +0.3 5,147,725 + -1.0 5,147,725 + +1.0 5,147,725 + -0.2 5,147,725 + +2.1 5,147,725 + +0.8 5,147,725 + -1.0 5,147,725 + -0.0 5,147,725 + +0.4 5,147,725 + -1.0 5,147,725 + -1.0 5,147,726 - +0.2 5,147,726 - -0.8 5,147,726 - +0.2 5,147,726 - -0.2 5,147,726 - -2.0 5,147,726 - -0.3 5,147,760 + -0.6 5,147,760 + -0.8 5,147,760 + -1.5 5,147,802 + -0.1 5,147,802 + -1.1 5,147,802 + +0.9 5,147,803 - +0.1 5,147,803 - -2.1 5,147,803 - -1.1 5,148,078 + AO353_23495 0.33 -1.6 5,148,078 + +0.5 5,148,464 + AO353_23495 0.83 -0.1 5,148,465 - AO353_23495 0.84 -0.5 5,148,465 - AO353_23495 0.84 -0.9 5,148,468 + AO353_23495 0.84 -0.7 5,148,590 + +0.7 5,148,591 - -1.3 5,148,599 + +0.1 5,148,599 + -1.3 5,148,600 - +1.1 5,148,600 - -0.8 5,148,694 + -0.2 5,148,694 + -0.3 5,148,694 + -1.1 5,148,695 - +0.1 5,148,695 - -1.3 5,148,695 - -0.1 5,148,874 + AO353_23500 0.43 -1.3 5,148,897 + AO353_23500 0.48 -0.3 5,149,119 + -0.6 5,149,119 + +0.5 5,149,184 - AO353_23505 0.13 +0.8 5,149,328 + AO353_23505 0.59 +0.2 5,149,328 + AO353_23505 0.59 +0.5 5,149,434 + +1.5 5,149,434 + +0.3 5,149,434 + -0.3 5,149,435 - -1.8 5,149,435 - -2.8 5,149,435 - -0.9 5,149,435 - -0.2 5,149,436 + +2.3 5,149,436 + -0.3 5,149,436 + -0.0 5,149,437 - +1.1 5,149,482 + +0.9 5,149,524 + -0.5 5,149,524 + -0.3 5,149,525 - -1.7 5,149,525 - -0.5 5,149,525 - -1.8 5,149,546 + +0.5
Or see this region's nucleotide sequence