Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_23495

Experiment: L-Aspartic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_23485 and AO353_23490 are separated by 99 nucleotidesAO353_23490 and AO353_23495 are separated by 65 nucleotidesAO353_23495 and AO353_23500 are separated by 91 nucleotidesAO353_23500 and AO353_23505 are separated by 9 nucleotidesAO353_23505 and AO353_23510 are separated by 107 nucleotides AO353_23485: AO353_23485 - lytic transglycosylase, at 5,145,465 to 5,146,898 _23485 AO353_23490: AO353_23490 - hydroxyacylglutathione hydrolase, at 5,146,998 to 5,147,765 _23490 AO353_23495: AO353_23495 - SAM-dependent methyltransferase, at 5,147,831 to 5,148,589 _23495 AO353_23500: AO353_23500 - ribonuclease H, at 5,148,681 to 5,149,133 _23500 AO353_23505: AO353_23505 - hypothetical protein, at 5,149,143 to 5,149,457 _23505 AO353_23510: AO353_23510 - transcriptional regulator, at 5,149,565 to 5,150,455 _23510 Position (kb) 5147 5148 5149Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5146.881 kb on - strandat 5146.886 kb on + strandat 5146.886 kb on + strandat 5146.886 kb on + strandat 5146.886 kb on + strandat 5146.886 kb on + strandat 5146.886 kb on + strandat 5146.887 kb on - strandat 5146.887 kb on - strandat 5146.887 kb on - strandat 5146.910 kb on + strandat 5146.939 kb on + strandat 5146.987 kb on - strandat 5146.999 kb on + strandat 5147.000 kb on - strandat 5147.000 kb on - strandat 5147.000 kb on - strandat 5147.006 kb on + strandat 5147.006 kb on + strandat 5147.006 kb on + strandat 5147.076 kb on + strand, within AO353_23490at 5147.109 kb on + strand, within AO353_23490at 5147.109 kb on + strand, within AO353_23490at 5147.110 kb on - strand, within AO353_23490at 5147.123 kb on + strand, within AO353_23490at 5147.123 kb on + strand, within AO353_23490at 5147.123 kb on + strand, within AO353_23490at 5147.123 kb on + strand, within AO353_23490at 5147.124 kb on - strand, within AO353_23490at 5147.124 kb on - strand, within AO353_23490at 5147.124 kb on - strand, within AO353_23490at 5147.175 kb on + strand, within AO353_23490at 5147.176 kb on - strand, within AO353_23490at 5147.176 kb on - strand, within AO353_23490at 5147.260 kb on + strand, within AO353_23490at 5147.260 kb on + strand, within AO353_23490at 5147.260 kb on + strand, within AO353_23490at 5147.261 kb on - strandat 5147.261 kb on - strand, within AO353_23490at 5147.261 kb on - strand, within AO353_23490at 5147.276 kb on - strand, within AO353_23490at 5147.276 kb on - strand, within AO353_23490at 5147.276 kb on - strand, within AO353_23490at 5147.339 kb on + strand, within AO353_23490at 5147.340 kb on - strand, within AO353_23490at 5147.407 kb on + strand, within AO353_23490at 5147.407 kb on + strand, within AO353_23490at 5147.407 kb on + strand, within AO353_23490at 5147.408 kb on - strand, within AO353_23490at 5147.408 kb on - strand, within AO353_23490at 5147.408 kb on - strand, within AO353_23490at 5147.408 kb on - strand, within AO353_23490at 5147.410 kb on + strand, within AO353_23490at 5147.411 kb on - strand, within AO353_23490at 5147.411 kb on - strand, within AO353_23490at 5147.411 kb on - strand, within AO353_23490at 5147.446 kb on + strand, within AO353_23490at 5147.447 kb on - strand, within AO353_23490at 5147.469 kb on + strand, within AO353_23490at 5147.536 kb on + strand, within AO353_23490at 5147.712 kb on + strandat 5147.712 kb on + strandat 5147.725 kb on + strandat 5147.725 kb on + strandat 5147.725 kb on + strandat 5147.725 kb on + strandat 5147.725 kb on + strandat 5147.725 kb on + strandat 5147.725 kb on + strandat 5147.725 kb on + strandat 5147.725 kb on + strandat 5147.725 kb on + strandat 5147.725 kb on + strandat 5147.725 kb on + strandat 5147.726 kb on - strandat 5147.726 kb on - strandat 5147.726 kb on - strandat 5147.726 kb on - strandat 5147.726 kb on - strandat 5147.726 kb on - strandat 5147.760 kb on + strandat 5147.760 kb on + strandat 5147.760 kb on + strandat 5147.802 kb on + strandat 5147.802 kb on + strandat 5147.802 kb on + strandat 5147.803 kb on - strandat 5147.803 kb on - strandat 5147.803 kb on - strandat 5148.078 kb on + strand, within AO353_23495at 5148.078 kb on + strandat 5148.464 kb on + strand, within AO353_23495at 5148.465 kb on - strand, within AO353_23495at 5148.465 kb on - strand, within AO353_23495at 5148.468 kb on + strand, within AO353_23495at 5148.590 kb on + strandat 5148.591 kb on - strandat 5148.599 kb on + strandat 5148.599 kb on + strandat 5148.600 kb on - strandat 5148.600 kb on - strandat 5148.694 kb on + strandat 5148.694 kb on + strandat 5148.694 kb on + strandat 5148.695 kb on - strandat 5148.695 kb on - strandat 5148.695 kb on - strandat 5148.874 kb on + strand, within AO353_23500at 5148.897 kb on + strand, within AO353_23500at 5149.119 kb on + strandat 5149.119 kb on + strandat 5149.184 kb on - strand, within AO353_23505at 5149.328 kb on + strand, within AO353_23505at 5149.328 kb on + strand, within AO353_23505at 5149.434 kb on + strandat 5149.434 kb on + strandat 5149.434 kb on + strandat 5149.435 kb on - strandat 5149.435 kb on - strandat 5149.435 kb on - strandat 5149.435 kb on - strandat 5149.436 kb on + strandat 5149.436 kb on + strandat 5149.436 kb on + strandat 5149.437 kb on - strandat 5149.482 kb on + strandat 5149.524 kb on + strandat 5149.524 kb on + strandat 5149.525 kb on - strandat 5149.525 kb on - strandat 5149.525 kb on - strandat 5149.546 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
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5,146,881 - +0.5
5,146,886 + -1.3
5,146,886 + -0.4
5,146,886 + -0.3
5,146,886 + -1.3
5,146,886 + -0.5
5,146,886 + +1.0
5,146,887 - +0.2
5,146,887 - -0.3
5,146,887 - -1.0
5,146,910 + +0.8
5,146,939 + -0.8
5,146,987 - -1.5
5,146,999 + -0.3
5,147,000 - -0.2
5,147,000 - -0.5
5,147,000 - +0.5
5,147,006 + +0.3
5,147,006 + +1.2
5,147,006 + -2.2
5,147,076 + AO353_23490 0.10 -0.4
5,147,109 + AO353_23490 0.14 +0.0
5,147,109 + AO353_23490 0.14 -1.4
5,147,110 - AO353_23490 0.15 +0.4
5,147,123 + AO353_23490 0.16 +1.3
5,147,123 + AO353_23490 0.16 +0.7
5,147,123 + AO353_23490 0.16 +0.5
5,147,123 + AO353_23490 0.16 +0.3
5,147,124 - AO353_23490 0.16 -0.4
5,147,124 - AO353_23490 0.16 -1.1
5,147,124 - AO353_23490 0.16 -0.3
5,147,175 + AO353_23490 0.23 -0.9
5,147,176 - AO353_23490 0.23 -1.1
5,147,176 - AO353_23490 0.23 -0.5
5,147,260 + AO353_23490 0.34 -0.3
5,147,260 + AO353_23490 0.34 -0.5
5,147,260 + AO353_23490 0.34 -1.3
5,147,261 - +1.5
5,147,261 - AO353_23490 0.34 -0.7
5,147,261 - AO353_23490 0.34 -0.6
5,147,276 - AO353_23490 0.36 -0.3
5,147,276 - AO353_23490 0.36 -0.6
5,147,276 - AO353_23490 0.36 -0.3
5,147,339 + AO353_23490 0.44 -0.0
5,147,340 - AO353_23490 0.45 -0.6
5,147,407 + AO353_23490 0.53 +1.1
5,147,407 + AO353_23490 0.53 -1.0
5,147,407 + AO353_23490 0.53 +0.7
5,147,408 - AO353_23490 0.53 -1.1
5,147,408 - AO353_23490 0.53 -2.0
5,147,408 - AO353_23490 0.53 +0.5
5,147,408 - AO353_23490 0.53 -1.7
5,147,410 + AO353_23490 0.54 -1.0
5,147,411 - AO353_23490 0.54 +0.0
5,147,411 - AO353_23490 0.54 -0.3
5,147,411 - AO353_23490 0.54 -1.3
5,147,446 + AO353_23490 0.58 -0.5
5,147,447 - AO353_23490 0.58 +1.0
5,147,469 + AO353_23490 0.61 +0.3
5,147,536 + AO353_23490 0.70 -1.0
5,147,712 + -0.3
5,147,712 + +0.4
5,147,725 + +1.2
5,147,725 + +0.3
5,147,725 + -1.0
5,147,725 + +1.0
5,147,725 + -0.2
5,147,725 + +2.1
5,147,725 + +0.8
5,147,725 + -1.0
5,147,725 + -0.0
5,147,725 + +0.4
5,147,725 + -1.0
5,147,725 + -1.0
5,147,726 - +0.2
5,147,726 - -0.8
5,147,726 - +0.2
5,147,726 - -0.2
5,147,726 - -2.0
5,147,726 - -0.3
5,147,760 + -0.6
5,147,760 + -0.8
5,147,760 + -1.5
5,147,802 + -0.1
5,147,802 + -1.1
5,147,802 + +0.9
5,147,803 - +0.1
5,147,803 - -2.1
5,147,803 - -1.1
5,148,078 + AO353_23495 0.33 -1.6
5,148,078 + +0.5
5,148,464 + AO353_23495 0.83 -0.1
5,148,465 - AO353_23495 0.84 -0.5
5,148,465 - AO353_23495 0.84 -0.9
5,148,468 + AO353_23495 0.84 -0.7
5,148,590 + +0.7
5,148,591 - -1.3
5,148,599 + +0.1
5,148,599 + -1.3
5,148,600 - +1.1
5,148,600 - -0.8
5,148,694 + -0.2
5,148,694 + -0.3
5,148,694 + -1.1
5,148,695 - +0.1
5,148,695 - -1.3
5,148,695 - -0.1
5,148,874 + AO353_23500 0.43 -1.3
5,148,897 + AO353_23500 0.48 -0.3
5,149,119 + -0.6
5,149,119 + +0.5
5,149,184 - AO353_23505 0.13 +0.8
5,149,328 + AO353_23505 0.59 +0.2
5,149,328 + AO353_23505 0.59 +0.5
5,149,434 + +1.5
5,149,434 + +0.3
5,149,434 + -0.3
5,149,435 - -1.8
5,149,435 - -2.8
5,149,435 - -0.9
5,149,435 - -0.2
5,149,436 + +2.3
5,149,436 + -0.3
5,149,436 + -0.0
5,149,437 - +1.1
5,149,482 + +0.9
5,149,524 + -0.5
5,149,524 + -0.3
5,149,525 - -1.7
5,149,525 - -0.5
5,149,525 - -1.8
5,149,546 + +0.5

Or see this region's nucleotide sequence