Experiment: L-Aspartic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_22950 and AO353_22955 are separated by 227 nucleotides AO353_22955 and AO353_22960 are separated by 155 nucleotides AO353_22960 and AO353_22965 are separated by 0 nucleotides
AO353_22950: AO353_22950 - universal stress protein UspA, at 5,041,272 to 5,042,138
_22950
AO353_22955: AO353_22955 - tRNA hydroxylase, at 5,042,366 to 5,042,977
_22955
AO353_22960: AO353_22960 - transcriptional regulator, at 5,043,133 to 5,043,840
_22960
AO353_22965: AO353_22965 - ATPase, at 5,043,841 to 5,045,118
_22965
Position (kb)
5043
5044 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 5042.181 kb on + strand at 5042.181 kb on + strand at 5042.181 kb on + strand at 5042.181 kb on + strand at 5042.181 kb on + strand at 5042.181 kb on + strand at 5042.182 kb on - strand at 5042.182 kb on - strand at 5042.183 kb on + strand at 5042.183 kb on + strand at 5042.184 kb on - strand at 5042.184 kb on - strand at 5042.184 kb on - strand at 5042.184 kb on - strand at 5042.184 kb on - strand at 5042.184 kb on - strand at 5042.184 kb on - strand at 5042.184 kb on - strand at 5042.216 kb on + strand at 5042.216 kb on + strand at 5042.217 kb on - strand at 5042.254 kb on + strand at 5042.254 kb on + strand at 5042.254 kb on + strand at 5042.254 kb on + strand at 5042.255 kb on - strand at 5042.255 kb on - strand at 5042.255 kb on - strand at 5042.255 kb on - strand at 5042.255 kb on - strand at 5042.255 kb on - strand at 5042.255 kb on - strand at 5042.255 kb on - strand at 5042.255 kb on - strand at 5042.255 kb on - strand at 5042.255 kb on - strand at 5042.255 kb on - strand at 5042.255 kb on - strand at 5042.255 kb on - strand at 5042.255 kb on - strand at 5042.255 kb on - strand at 5042.255 kb on - strand at 5042.255 kb on - strand at 5042.255 kb on - strand at 5042.256 kb on + strand at 5042.281 kb on + strand at 5042.281 kb on + strand at 5042.282 kb on - strand at 5042.282 kb on - strand at 5042.282 kb on - strand at 5042.302 kb on + strand at 5042.516 kb on + strand, within AO353_22955 at 5042.516 kb on + strand, within AO353_22955 at 5042.517 kb on - strand at 5042.517 kb on - strand, within AO353_22955 at 5042.517 kb on - strand, within AO353_22955 at 5042.793 kb on - strand, within AO353_22955 at 5042.793 kb on - strand, within AO353_22955 at 5042.849 kb on + strand, within AO353_22955 at 5042.849 kb on + strand, within AO353_22955 at 5043.007 kb on + strand at 5043.007 kb on + strand at 5043.007 kb on + strand at 5043.008 kb on - strand at 5043.091 kb on + strand at 5043.091 kb on + strand at 5043.091 kb on + strand at 5043.092 kb on - strand at 5043.092 kb on - strand at 5043.093 kb on + strand at 5043.093 kb on + strand at 5043.094 kb on - strand at 5043.094 kb on - strand at 5043.094 kb on - strand at 5043.132 kb on + strand at 5043.132 kb on + strand at 5043.132 kb on + strand at 5043.132 kb on + strand at 5043.132 kb on + strand at 5043.133 kb on - strand at 5043.133 kb on - strand at 5043.133 kb on - strand at 5043.133 kb on - strand at 5043.133 kb on - strand at 5043.158 kb on + strand at 5043.158 kb on + strand at 5043.158 kb on + strand at 5043.158 kb on + strand at 5043.159 kb on - strand at 5043.159 kb on - strand at 5043.159 kb on - strand at 5043.159 kb on - strand at 5043.159 kb on - strand at 5043.159 kb on - strand at 5043.439 kb on + strand, within AO353_22960 at 5043.439 kb on + strand, within AO353_22960 at 5043.440 kb on - strand, within AO353_22960 at 5043.440 kb on - strand, within AO353_22960 at 5043.440 kb on - strand, within AO353_22960 at 5043.440 kb on - strand, within AO353_22960 at 5043.440 kb on - strand, within AO353_22960 at 5043.440 kb on - strand, within AO353_22960 at 5043.440 kb on - strand, within AO353_22960 at 5043.467 kb on + strand, within AO353_22960 at 5043.730 kb on + strand, within AO353_22960 at 5043.730 kb on + strand, within AO353_22960 at 5043.730 kb on + strand, within AO353_22960 at 5043.730 kb on + strand, within AO353_22960 at 5043.731 kb on - strand, within AO353_22960 at 5043.731 kb on - strand, within AO353_22960 at 5043.731 kb on - strand, within AO353_22960 at 5043.731 kb on - strand, within AO353_22960 at 5043.731 kb on - strand, within AO353_22960 at 5043.808 kb on + strand at 5043.809 kb on - strand at 5043.809 kb on - strand at 5043.809 kb on - strand at 5043.838 kb on + strand at 5043.838 kb on + strand at 5043.839 kb on - strand at 5043.839 kb on - strand at 5043.846 kb on - strand at 5043.846 kb on - strand at 5043.865 kb on + strand at 5043.865 kb on + strand at 5043.866 kb on - strand at 5043.866 kb on - strand at 5043.866 kb on - strand at 5043.866 kb on - strand at 5043.866 kb on - strand at 5043.866 kb on - strand at 5043.913 kb on + strand at 5043.913 kb on + strand at 5043.914 kb on - strand at 5043.952 kb on + strand at 5043.952 kb on + strand at 5043.952 kb on + strand at 5043.952 kb on + strand at 5043.952 kb on + strand at 5043.952 kb on + strand at 5043.952 kb on + strand at 5043.952 kb on + strand at 5043.953 kb on - strand at 5043.953 kb on - strand at 5043.953 kb on - strand at 5043.953 kb on - strand at 5043.955 kb on - strand at 5043.982 kb on + strand, within AO353_22965 at 5043.983 kb on - strand, within AO353_22965 at 5043.983 kb on - strand, within AO353_22965 at 5043.983 kb on - strand, within AO353_22965 at 5043.983 kb on - strand, within AO353_22965 at 5044.234 kb on + strand, within AO353_22965 at 5044.234 kb on + strand, within AO353_22965 at 5044.234 kb on + strand, within AO353_22965 at 5044.234 kb on + strand, within AO353_22965 at 5044.234 kb on + strand, within AO353_22965 at 5044.235 kb on - strand, within AO353_22965 at 5044.235 kb on - strand, within AO353_22965 at 5044.235 kb on - strand, within AO353_22965 at 5044.247 kb on - strand, within AO353_22965 at 5044.253 kb on + strand, within AO353_22965 at 5044.282 kb on + strand, within AO353_22965 at 5044.283 kb on - strand, within AO353_22965 at 5044.283 kb on - strand, within AO353_22965 at 5044.582 kb on + strand, within AO353_22965 at 5044.582 kb on + strand, within AO353_22965 at 5044.582 kb on + strand, within AO353_22965 at 5044.582 kb on + strand, within AO353_22965 at 5044.583 kb on - strand, within AO353_22965 at 5044.583 kb on - strand, within AO353_22965 at 5044.583 kb on - strand, within AO353_22965 at 5044.583 kb on - strand, within AO353_22965 at 5044.583 kb on - strand, within AO353_22965 at 5044.583 kb on - strand, within AO353_22965 at 5044.583 kb on - strand, within AO353_22965 at 5044.583 kb on - strand, within AO353_22965 at 5044.622 kb on + strand, within AO353_22965 at 5044.623 kb on - strand, within AO353_22965 at 5044.623 kb on - strand, within AO353_22965 at 5044.630 kb on + strand, within AO353_22965 at 5044.630 kb on + strand, within AO353_22965 at 5044.630 kb on + strand, within AO353_22965 at 5044.630 kb on + strand, within AO353_22965 at 5044.631 kb on - strand, within AO353_22965 at 5044.631 kb on - strand, within AO353_22965 at 5044.631 kb on - strand, within AO353_22965 at 5044.631 kb on - strand, within AO353_22965
Per-strain Table
Position Strand Gene LocusTag Fraction L-Aspartic Acid (C) remove 5,042,181 + -1.7 5,042,181 + -0.2 5,042,181 + +1.3 5,042,181 + -1.8 5,042,181 + +0.2 5,042,181 + -0.0 5,042,182 - -0.0 5,042,182 - -1.1 5,042,183 + -1.2 5,042,183 + -0.2 5,042,184 - +0.2 5,042,184 - -0.2 5,042,184 - -0.3 5,042,184 - +0.8 5,042,184 - -0.5 5,042,184 - -0.2 5,042,184 - -0.1 5,042,184 - +0.8 5,042,216 + -1.0 5,042,216 + -2.4 5,042,217 - +1.3 5,042,254 + +0.4 5,042,254 + -1.9 5,042,254 + +0.5 5,042,254 + +0.3 5,042,255 - -0.2 5,042,255 - -0.7 5,042,255 - -1.4 5,042,255 - -0.6 5,042,255 - -0.1 5,042,255 - -0.5 5,042,255 - -0.2 5,042,255 - -1.1 5,042,255 - +1.6 5,042,255 - -0.1 5,042,255 - -0.1 5,042,255 - -0.8 5,042,255 - -1.4 5,042,255 - -0.7 5,042,255 - -0.7 5,042,255 - -1.1 5,042,255 - -0.0 5,042,255 - +0.2 5,042,255 - +1.6 5,042,256 + -0.2 5,042,281 + +1.6 5,042,281 + -0.9 5,042,282 - +1.0 5,042,282 - +1.2 5,042,282 - -0.7 5,042,302 + -0.6 5,042,516 + AO353_22955 0.25 -1.6 5,042,516 + AO353_22955 0.25 -0.0 5,042,517 - +1.0 5,042,517 - AO353_22955 0.25 -1.2 5,042,517 - AO353_22955 0.25 +0.6 5,042,793 - AO353_22955 0.70 +0.4 5,042,793 - AO353_22955 0.70 -1.2 5,042,849 + AO353_22955 0.79 -0.6 5,042,849 + AO353_22955 0.79 +0.1 5,043,007 + -1.0 5,043,007 + -0.2 5,043,007 + +0.8 5,043,008 - -0.3 5,043,091 + -0.4 5,043,091 + -0.4 5,043,091 + -0.1 5,043,092 - -0.3 5,043,092 - -0.0 5,043,093 + -1.6 5,043,093 + -0.2 5,043,094 - -0.0 5,043,094 - -0.5 5,043,094 - -0.9 5,043,132 + -0.9 5,043,132 + -1.2 5,043,132 + -0.4 5,043,132 + +1.5 5,043,132 + +0.6 5,043,133 - -1.4 5,043,133 - +0.8 5,043,133 - +1.9 5,043,133 - +0.4 5,043,133 - -0.6 5,043,158 + +1.6 5,043,158 + -0.5 5,043,158 + -0.0 5,043,158 + +1.6 5,043,159 - +1.6 5,043,159 - -1.1 5,043,159 - -0.7 5,043,159 - +0.6 5,043,159 - -0.9 5,043,159 - +0.0 5,043,439 + AO353_22960 0.43 +0.2 5,043,439 + AO353_22960 0.43 -0.7 5,043,440 - AO353_22960 0.43 -0.4 5,043,440 - AO353_22960 0.43 -1.9 5,043,440 - AO353_22960 0.43 +0.1 5,043,440 - AO353_22960 0.43 +0.6 5,043,440 - AO353_22960 0.43 +0.7 5,043,440 - AO353_22960 0.43 -0.2 5,043,440 - AO353_22960 0.43 +1.4 5,043,467 + AO353_22960 0.47 +1.1 5,043,730 + AO353_22960 0.84 +1.0 5,043,730 + AO353_22960 0.84 -0.7 5,043,730 + AO353_22960 0.84 +1.0 5,043,730 + AO353_22960 0.84 -0.4 5,043,731 - AO353_22960 0.84 +1.0 5,043,731 - AO353_22960 0.84 -0.6 5,043,731 - AO353_22960 0.84 -1.6 5,043,731 - AO353_22960 0.84 +0.2 5,043,731 - AO353_22960 0.84 -0.4 5,043,808 + -0.7 5,043,809 - -0.5 5,043,809 - -2.2 5,043,809 - -0.0 5,043,838 + -0.2 5,043,838 + -0.2 5,043,839 - +2.0 5,043,839 - -0.6 5,043,846 - +0.7 5,043,846 - +0.4 5,043,865 + +1.6 5,043,865 + -0.6 5,043,866 - -1.6 5,043,866 - -1.5 5,043,866 - +0.6 5,043,866 - -0.5 5,043,866 - -0.6 5,043,866 - -0.2 5,043,913 + -0.7 5,043,913 + -0.1 5,043,914 - -0.4 5,043,952 + -0.4 5,043,952 + +1.6 5,043,952 + -0.9 5,043,952 + -0.1 5,043,952 + -0.0 5,043,952 + +0.2 5,043,952 + +0.2 5,043,952 + -0.8 5,043,953 - +0.6 5,043,953 - +0.3 5,043,953 - -0.4 5,043,953 - -0.7 5,043,955 - -0.2 5,043,982 + AO353_22965 0.11 -0.6 5,043,983 - AO353_22965 0.11 +0.6 5,043,983 - AO353_22965 0.11 -0.2 5,043,983 - AO353_22965 0.11 +0.3 5,043,983 - AO353_22965 0.11 -0.1 5,044,234 + AO353_22965 0.31 -0.2 5,044,234 + AO353_22965 0.31 -0.3 5,044,234 + AO353_22965 0.31 +0.3 5,044,234 + AO353_22965 0.31 -0.6 5,044,234 + AO353_22965 0.31 -0.6 5,044,235 - AO353_22965 0.31 -0.2 5,044,235 - AO353_22965 0.31 +0.2 5,044,235 - AO353_22965 0.31 +0.4 5,044,247 - AO353_22965 0.32 +0.6 5,044,253 + AO353_22965 0.32 +1.3 5,044,282 + AO353_22965 0.35 -0.2 5,044,283 - AO353_22965 0.35 +0.8 5,044,283 - AO353_22965 0.35 -0.3 5,044,582 + AO353_22965 0.58 -0.2 5,044,582 + AO353_22965 0.58 -0.9 5,044,582 + AO353_22965 0.58 +0.7 5,044,582 + AO353_22965 0.58 -0.6 5,044,583 - AO353_22965 0.58 -0.2 5,044,583 - AO353_22965 0.58 -1.7 5,044,583 - AO353_22965 0.58 +0.6 5,044,583 - AO353_22965 0.58 -0.2 5,044,583 - AO353_22965 0.58 -1.7 5,044,583 - AO353_22965 0.58 -1.5 5,044,583 - AO353_22965 0.58 -0.2 5,044,583 - AO353_22965 0.58 +1.0 5,044,622 + AO353_22965 0.61 +0.6 5,044,623 - AO353_22965 0.61 +0.6 5,044,623 - AO353_22965 0.61 -0.7 5,044,630 + AO353_22965 0.62 -0.7 5,044,630 + AO353_22965 0.62 +0.4 5,044,630 + AO353_22965 0.62 -1.7 5,044,630 + AO353_22965 0.62 -0.1 5,044,631 - AO353_22965 0.62 -0.4 5,044,631 - AO353_22965 0.62 +0.3 5,044,631 - AO353_22965 0.62 -0.7 5,044,631 - AO353_22965 0.62 -1.0
Or see this region's nucleotide sequence