Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_22960

Experiment: L-Aspartic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_22950 and AO353_22955 are separated by 227 nucleotidesAO353_22955 and AO353_22960 are separated by 155 nucleotidesAO353_22960 and AO353_22965 are separated by 0 nucleotides AO353_22950: AO353_22950 - universal stress protein UspA, at 5,041,272 to 5,042,138 _22950 AO353_22955: AO353_22955 - tRNA hydroxylase, at 5,042,366 to 5,042,977 _22955 AO353_22960: AO353_22960 - transcriptional regulator, at 5,043,133 to 5,043,840 _22960 AO353_22965: AO353_22965 - ATPase, at 5,043,841 to 5,045,118 _22965 Position (kb) 5043 5044Strain fitness (log2 ratio) -2 -1 0 1 2at 5042.181 kb on + strandat 5042.181 kb on + strandat 5042.181 kb on + strandat 5042.181 kb on + strandat 5042.181 kb on + strandat 5042.181 kb on + strandat 5042.182 kb on - strandat 5042.182 kb on - strandat 5042.183 kb on + strandat 5042.183 kb on + strandat 5042.184 kb on - strandat 5042.184 kb on - strandat 5042.184 kb on - strandat 5042.184 kb on - strandat 5042.184 kb on - strandat 5042.184 kb on - strandat 5042.184 kb on - strandat 5042.184 kb on - strandat 5042.216 kb on + strandat 5042.216 kb on + strandat 5042.217 kb on - strandat 5042.254 kb on + strandat 5042.254 kb on + strandat 5042.254 kb on + strandat 5042.254 kb on + strandat 5042.255 kb on - strandat 5042.255 kb on - strandat 5042.255 kb on - strandat 5042.255 kb on - strandat 5042.255 kb on - strandat 5042.255 kb on - strandat 5042.255 kb on - strandat 5042.255 kb on - strandat 5042.255 kb on - strandat 5042.255 kb on - strandat 5042.255 kb on - strandat 5042.255 kb on - strandat 5042.255 kb on - strandat 5042.255 kb on - strandat 5042.255 kb on - strandat 5042.255 kb on - strandat 5042.255 kb on - strandat 5042.255 kb on - strandat 5042.255 kb on - strandat 5042.256 kb on + strandat 5042.281 kb on + strandat 5042.281 kb on + strandat 5042.282 kb on - strandat 5042.282 kb on - strandat 5042.282 kb on - strandat 5042.302 kb on + strandat 5042.516 kb on + strand, within AO353_22955at 5042.516 kb on + strand, within AO353_22955at 5042.517 kb on - strandat 5042.517 kb on - strand, within AO353_22955at 5042.517 kb on - strand, within AO353_22955at 5042.793 kb on - strand, within AO353_22955at 5042.793 kb on - strand, within AO353_22955at 5042.849 kb on + strand, within AO353_22955at 5042.849 kb on + strand, within AO353_22955at 5043.007 kb on + strandat 5043.007 kb on + strandat 5043.007 kb on + strandat 5043.008 kb on - strandat 5043.091 kb on + strandat 5043.091 kb on + strandat 5043.091 kb on + strandat 5043.092 kb on - strandat 5043.092 kb on - strandat 5043.093 kb on + strandat 5043.093 kb on + strandat 5043.094 kb on - strandat 5043.094 kb on - strandat 5043.094 kb on - strandat 5043.132 kb on + strandat 5043.132 kb on + strandat 5043.132 kb on + strandat 5043.132 kb on + strandat 5043.132 kb on + strandat 5043.133 kb on - strandat 5043.133 kb on - strandat 5043.133 kb on - strandat 5043.133 kb on - strandat 5043.133 kb on - strandat 5043.158 kb on + strandat 5043.158 kb on + strandat 5043.158 kb on + strandat 5043.158 kb on + strandat 5043.159 kb on - strandat 5043.159 kb on - strandat 5043.159 kb on - strandat 5043.159 kb on - strandat 5043.159 kb on - strandat 5043.159 kb on - strandat 5043.439 kb on + strand, within AO353_22960at 5043.439 kb on + strand, within AO353_22960at 5043.440 kb on - strand, within AO353_22960at 5043.440 kb on - strand, within AO353_22960at 5043.440 kb on - strand, within AO353_22960at 5043.440 kb on - strand, within AO353_22960at 5043.440 kb on - strand, within AO353_22960at 5043.440 kb on - strand, within AO353_22960at 5043.440 kb on - strand, within AO353_22960at 5043.467 kb on + strand, within AO353_22960at 5043.730 kb on + strand, within AO353_22960at 5043.730 kb on + strand, within AO353_22960at 5043.730 kb on + strand, within AO353_22960at 5043.730 kb on + strand, within AO353_22960at 5043.731 kb on - strand, within AO353_22960at 5043.731 kb on - strand, within AO353_22960at 5043.731 kb on - strand, within AO353_22960at 5043.731 kb on - strand, within AO353_22960at 5043.731 kb on - strand, within AO353_22960at 5043.808 kb on + strandat 5043.809 kb on - strandat 5043.809 kb on - strandat 5043.809 kb on - strandat 5043.838 kb on + strandat 5043.838 kb on + strandat 5043.839 kb on - strandat 5043.839 kb on - strandat 5043.846 kb on - strandat 5043.846 kb on - strandat 5043.865 kb on + strandat 5043.865 kb on + strandat 5043.866 kb on - strandat 5043.866 kb on - strandat 5043.866 kb on - strandat 5043.866 kb on - strandat 5043.866 kb on - strandat 5043.866 kb on - strandat 5043.913 kb on + strandat 5043.913 kb on + strandat 5043.914 kb on - strandat 5043.952 kb on + strandat 5043.952 kb on + strandat 5043.952 kb on + strandat 5043.952 kb on + strandat 5043.952 kb on + strandat 5043.952 kb on + strandat 5043.952 kb on + strandat 5043.952 kb on + strandat 5043.953 kb on - strandat 5043.953 kb on - strandat 5043.953 kb on - strandat 5043.953 kb on - strandat 5043.955 kb on - strandat 5043.982 kb on + strand, within AO353_22965at 5043.983 kb on - strand, within AO353_22965at 5043.983 kb on - strand, within AO353_22965at 5043.983 kb on - strand, within AO353_22965at 5043.983 kb on - strand, within AO353_22965at 5044.234 kb on + strand, within AO353_22965at 5044.234 kb on + strand, within AO353_22965at 5044.234 kb on + strand, within AO353_22965at 5044.234 kb on + strand, within AO353_22965at 5044.234 kb on + strand, within AO353_22965at 5044.235 kb on - strand, within AO353_22965at 5044.235 kb on - strand, within AO353_22965at 5044.235 kb on - strand, within AO353_22965at 5044.247 kb on - strand, within AO353_22965at 5044.253 kb on + strand, within AO353_22965at 5044.282 kb on + strand, within AO353_22965at 5044.283 kb on - strand, within AO353_22965at 5044.283 kb on - strand, within AO353_22965at 5044.582 kb on + strand, within AO353_22965at 5044.582 kb on + strand, within AO353_22965at 5044.582 kb on + strand, within AO353_22965at 5044.582 kb on + strand, within AO353_22965at 5044.583 kb on - strand, within AO353_22965at 5044.583 kb on - strand, within AO353_22965at 5044.583 kb on - strand, within AO353_22965at 5044.583 kb on - strand, within AO353_22965at 5044.583 kb on - strand, within AO353_22965at 5044.583 kb on - strand, within AO353_22965at 5044.583 kb on - strand, within AO353_22965at 5044.583 kb on - strand, within AO353_22965at 5044.622 kb on + strand, within AO353_22965at 5044.623 kb on - strand, within AO353_22965at 5044.623 kb on - strand, within AO353_22965at 5044.630 kb on + strand, within AO353_22965at 5044.630 kb on + strand, within AO353_22965at 5044.630 kb on + strand, within AO353_22965at 5044.630 kb on + strand, within AO353_22965at 5044.631 kb on - strand, within AO353_22965at 5044.631 kb on - strand, within AO353_22965at 5044.631 kb on - strand, within AO353_22965at 5044.631 kb on - strand, within AO353_22965

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
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5,042,181 + -1.7
5,042,181 + -0.2
5,042,181 + +1.3
5,042,181 + -1.8
5,042,181 + +0.2
5,042,181 + -0.0
5,042,182 - -0.0
5,042,182 - -1.1
5,042,183 + -1.2
5,042,183 + -0.2
5,042,184 - +0.2
5,042,184 - -0.2
5,042,184 - -0.3
5,042,184 - +0.8
5,042,184 - -0.5
5,042,184 - -0.2
5,042,184 - -0.1
5,042,184 - +0.8
5,042,216 + -1.0
5,042,216 + -2.4
5,042,217 - +1.3
5,042,254 + +0.4
5,042,254 + -1.9
5,042,254 + +0.5
5,042,254 + +0.3
5,042,255 - -0.2
5,042,255 - -0.7
5,042,255 - -1.4
5,042,255 - -0.6
5,042,255 - -0.1
5,042,255 - -0.5
5,042,255 - -0.2
5,042,255 - -1.1
5,042,255 - +1.6
5,042,255 - -0.1
5,042,255 - -0.1
5,042,255 - -0.8
5,042,255 - -1.4
5,042,255 - -0.7
5,042,255 - -0.7
5,042,255 - -1.1
5,042,255 - -0.0
5,042,255 - +0.2
5,042,255 - +1.6
5,042,256 + -0.2
5,042,281 + +1.6
5,042,281 + -0.9
5,042,282 - +1.0
5,042,282 - +1.2
5,042,282 - -0.7
5,042,302 + -0.6
5,042,516 + AO353_22955 0.25 -1.6
5,042,516 + AO353_22955 0.25 -0.0
5,042,517 - +1.0
5,042,517 - AO353_22955 0.25 -1.2
5,042,517 - AO353_22955 0.25 +0.6
5,042,793 - AO353_22955 0.70 +0.4
5,042,793 - AO353_22955 0.70 -1.2
5,042,849 + AO353_22955 0.79 -0.6
5,042,849 + AO353_22955 0.79 +0.1
5,043,007 + -1.0
5,043,007 + -0.2
5,043,007 + +0.8
5,043,008 - -0.3
5,043,091 + -0.4
5,043,091 + -0.4
5,043,091 + -0.1
5,043,092 - -0.3
5,043,092 - -0.0
5,043,093 + -1.6
5,043,093 + -0.2
5,043,094 - -0.0
5,043,094 - -0.5
5,043,094 - -0.9
5,043,132 + -0.9
5,043,132 + -1.2
5,043,132 + -0.4
5,043,132 + +1.5
5,043,132 + +0.6
5,043,133 - -1.4
5,043,133 - +0.8
5,043,133 - +1.9
5,043,133 - +0.4
5,043,133 - -0.6
5,043,158 + +1.6
5,043,158 + -0.5
5,043,158 + -0.0
5,043,158 + +1.6
5,043,159 - +1.6
5,043,159 - -1.1
5,043,159 - -0.7
5,043,159 - +0.6
5,043,159 - -0.9
5,043,159 - +0.0
5,043,439 + AO353_22960 0.43 +0.2
5,043,439 + AO353_22960 0.43 -0.7
5,043,440 - AO353_22960 0.43 -0.4
5,043,440 - AO353_22960 0.43 -1.9
5,043,440 - AO353_22960 0.43 +0.1
5,043,440 - AO353_22960 0.43 +0.6
5,043,440 - AO353_22960 0.43 +0.7
5,043,440 - AO353_22960 0.43 -0.2
5,043,440 - AO353_22960 0.43 +1.4
5,043,467 + AO353_22960 0.47 +1.1
5,043,730 + AO353_22960 0.84 +1.0
5,043,730 + AO353_22960 0.84 -0.7
5,043,730 + AO353_22960 0.84 +1.0
5,043,730 + AO353_22960 0.84 -0.4
5,043,731 - AO353_22960 0.84 +1.0
5,043,731 - AO353_22960 0.84 -0.6
5,043,731 - AO353_22960 0.84 -1.6
5,043,731 - AO353_22960 0.84 +0.2
5,043,731 - AO353_22960 0.84 -0.4
5,043,808 + -0.7
5,043,809 - -0.5
5,043,809 - -2.2
5,043,809 - -0.0
5,043,838 + -0.2
5,043,838 + -0.2
5,043,839 - +2.0
5,043,839 - -0.6
5,043,846 - +0.7
5,043,846 - +0.4
5,043,865 + +1.6
5,043,865 + -0.6
5,043,866 - -1.6
5,043,866 - -1.5
5,043,866 - +0.6
5,043,866 - -0.5
5,043,866 - -0.6
5,043,866 - -0.2
5,043,913 + -0.7
5,043,913 + -0.1
5,043,914 - -0.4
5,043,952 + -0.4
5,043,952 + +1.6
5,043,952 + -0.9
5,043,952 + -0.1
5,043,952 + -0.0
5,043,952 + +0.2
5,043,952 + +0.2
5,043,952 + -0.8
5,043,953 - +0.6
5,043,953 - +0.3
5,043,953 - -0.4
5,043,953 - -0.7
5,043,955 - -0.2
5,043,982 + AO353_22965 0.11 -0.6
5,043,983 - AO353_22965 0.11 +0.6
5,043,983 - AO353_22965 0.11 -0.2
5,043,983 - AO353_22965 0.11 +0.3
5,043,983 - AO353_22965 0.11 -0.1
5,044,234 + AO353_22965 0.31 -0.2
5,044,234 + AO353_22965 0.31 -0.3
5,044,234 + AO353_22965 0.31 +0.3
5,044,234 + AO353_22965 0.31 -0.6
5,044,234 + AO353_22965 0.31 -0.6
5,044,235 - AO353_22965 0.31 -0.2
5,044,235 - AO353_22965 0.31 +0.2
5,044,235 - AO353_22965 0.31 +0.4
5,044,247 - AO353_22965 0.32 +0.6
5,044,253 + AO353_22965 0.32 +1.3
5,044,282 + AO353_22965 0.35 -0.2
5,044,283 - AO353_22965 0.35 +0.8
5,044,283 - AO353_22965 0.35 -0.3
5,044,582 + AO353_22965 0.58 -0.2
5,044,582 + AO353_22965 0.58 -0.9
5,044,582 + AO353_22965 0.58 +0.7
5,044,582 + AO353_22965 0.58 -0.6
5,044,583 - AO353_22965 0.58 -0.2
5,044,583 - AO353_22965 0.58 -1.7
5,044,583 - AO353_22965 0.58 +0.6
5,044,583 - AO353_22965 0.58 -0.2
5,044,583 - AO353_22965 0.58 -1.7
5,044,583 - AO353_22965 0.58 -1.5
5,044,583 - AO353_22965 0.58 -0.2
5,044,583 - AO353_22965 0.58 +1.0
5,044,622 + AO353_22965 0.61 +0.6
5,044,623 - AO353_22965 0.61 +0.6
5,044,623 - AO353_22965 0.61 -0.7
5,044,630 + AO353_22965 0.62 -0.7
5,044,630 + AO353_22965 0.62 +0.4
5,044,630 + AO353_22965 0.62 -1.7
5,044,630 + AO353_22965 0.62 -0.1
5,044,631 - AO353_22965 0.62 -0.4
5,044,631 - AO353_22965 0.62 +0.3
5,044,631 - AO353_22965 0.62 -0.7
5,044,631 - AO353_22965 0.62 -1.0

Or see this region's nucleotide sequence