Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_22195

Experiment: L-Aspartic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_22185 and AO353_22190 overlap by 4 nucleotidesAO353_22190 and AO353_22195 overlap by 4 nucleotidesAO353_22195 and AO353_22200 are separated by 37 nucleotidesAO353_22200 and AO353_22205 are separated by 102 nucleotides AO353_22185: AO353_22185 - metal ABC transporter substrate-binding protein, at 4,858,930 to 4,859,745 _22185 AO353_22190: AO353_22190 - methionine ABC transporter ATP-binding protein, at 4,859,742 to 4,860,722 _22190 AO353_22195: AO353_22195 - metal ABC transporter permease, at 4,860,719 to 4,861,390 _22195 AO353_22200: AO353_22200 - metal-binding protein, at 4,861,428 to 4,861,889 _22200 AO353_22205: AO353_22205 - copper resistance protein CopB, at 4,861,992 to 4,862,927 _22205 Position (kb) 4860 4861 4862Strain fitness (log2 ratio) -2 -1 0 1at 4859.864 kb on + strand, within AO353_22190at 4860.074 kb on + strand, within AO353_22190at 4860.097 kb on + strand, within AO353_22190at 4860.106 kb on + strand, within AO353_22190at 4860.107 kb on - strand, within AO353_22190at 4860.118 kb on + strand, within AO353_22190at 4860.118 kb on + strand, within AO353_22190at 4860.118 kb on + strand, within AO353_22190at 4860.216 kb on + strand, within AO353_22190at 4860.216 kb on + strand, within AO353_22190at 4860.217 kb on - strand, within AO353_22190at 4860.217 kb on - strand, within AO353_22190at 4860.220 kb on + strand, within AO353_22190at 4860.220 kb on + strand, within AO353_22190at 4860.221 kb on - strand, within AO353_22190at 4860.221 kb on - strand, within AO353_22190at 4860.221 kb on - strand, within AO353_22190at 4860.221 kb on - strand, within AO353_22190at 4860.221 kb on - strand, within AO353_22190at 4860.465 kb on + strand, within AO353_22190at 4860.466 kb on - strand, within AO353_22190at 4860.550 kb on + strand, within AO353_22190at 4860.550 kb on + strand, within AO353_22190at 4860.551 kb on - strand, within AO353_22190at 4860.551 kb on - strand, within AO353_22190at 4860.551 kb on - strand, within AO353_22190at 4860.551 kb on - strand, within AO353_22190at 4860.728 kb on - strandat 4860.785 kb on + strandat 4860.785 kb on + strandat 4860.785 kb on + strandat 4860.785 kb on + strandat 4860.785 kb on + strandat 4860.785 kb on + strandat 4860.785 kb on + strandat 4860.785 kb on + strandat 4860.785 kb on + strandat 4860.785 kb on + strandat 4860.786 kb on - strandat 4860.786 kb on - strandat 4860.786 kb on - strandat 4860.978 kb on + strand, within AO353_22195at 4861.120 kb on + strand, within AO353_22195at 4861.120 kb on + strand, within AO353_22195at 4861.121 kb on - strand, within AO353_22195at 4861.442 kb on - strandat 4861.472 kb on + strandat 4861.492 kb on + strand, within AO353_22200at 4861.590 kb on + strand, within AO353_22200at 4861.590 kb on + strand, within AO353_22200at 4861.590 kb on + strand, within AO353_22200at 4861.591 kb on - strand, within AO353_22200at 4861.591 kb on - strand, within AO353_22200at 4861.591 kb on - strand, within AO353_22200at 4861.591 kb on - strand, within AO353_22200at 4861.605 kb on + strand, within AO353_22200at 4861.605 kb on + strand, within AO353_22200at 4861.861 kb on - strandat 4861.861 kb on - strandat 4861.861 kb on - strandat 4861.894 kb on - strandat 4861.964 kb on + strandat 4862.104 kb on + strand, within AO353_22205at 4862.104 kb on + strand, within AO353_22205at 4862.104 kb on + strand, within AO353_22205at 4862.104 kb on + strand, within AO353_22205at 4862.104 kb on + strand, within AO353_22205at 4862.104 kb on + strand, within AO353_22205at 4862.105 kb on - strand, within AO353_22205at 4862.105 kb on - strand, within AO353_22205at 4862.105 kb on - strand, within AO353_22205at 4862.105 kb on - strand, within AO353_22205at 4862.105 kb on - strand, within AO353_22205at 4862.105 kb on - strand, within AO353_22205at 4862.305 kb on + strand, within AO353_22205at 4862.305 kb on + strandat 4862.305 kb on + strand, within AO353_22205at 4862.305 kb on + strand, within AO353_22205at 4862.305 kb on + strand, within AO353_22205at 4862.306 kb on - strand, within AO353_22205at 4862.306 kb on - strand, within AO353_22205at 4862.306 kb on - strand, within AO353_22205at 4862.306 kb on - strand, within AO353_22205at 4862.306 kb on - strand, within AO353_22205at 4862.306 kb on - strand, within AO353_22205at 4862.306 kb on - strand, within AO353_22205at 4862.306 kb on - strand, within AO353_22205at 4862.306 kb on - strand, within AO353_22205at 4862.332 kb on + strand, within AO353_22205at 4862.332 kb on + strand, within AO353_22205at 4862.332 kb on + strand, within AO353_22205at 4862.332 kb on + strand, within AO353_22205at 4862.333 kb on - strand, within AO353_22205at 4862.333 kb on - strand, within AO353_22205at 4862.333 kb on - strand, within AO353_22205at 4862.333 kb on - strand, within AO353_22205at 4862.352 kb on - strand, within AO353_22205

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
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4,859,864 + AO353_22190 0.12 -0.1
4,860,074 + AO353_22190 0.34 -1.3
4,860,097 + AO353_22190 0.36 -1.6
4,860,106 + AO353_22190 0.37 -0.8
4,860,107 - AO353_22190 0.37 -1.7
4,860,118 + AO353_22190 0.38 +0.6
4,860,118 + AO353_22190 0.38 -0.7
4,860,118 + AO353_22190 0.38 -1.4
4,860,216 + AO353_22190 0.48 -1.0
4,860,216 + AO353_22190 0.48 -0.2
4,860,217 - AO353_22190 0.48 -1.1
4,860,217 - AO353_22190 0.48 -1.0
4,860,220 + AO353_22190 0.49 -0.0
4,860,220 + AO353_22190 0.49 +1.0
4,860,221 - AO353_22190 0.49 -0.4
4,860,221 - AO353_22190 0.49 +0.0
4,860,221 - AO353_22190 0.49 +0.6
4,860,221 - AO353_22190 0.49 -1.2
4,860,221 - AO353_22190 0.49 -1.2
4,860,465 + AO353_22190 0.74 +0.1
4,860,466 - AO353_22190 0.74 -0.7
4,860,550 + AO353_22190 0.82 +0.0
4,860,550 + AO353_22190 0.82 +0.3
4,860,551 - AO353_22190 0.82 +0.2
4,860,551 - AO353_22190 0.82 -0.2
4,860,551 - AO353_22190 0.82 -0.3
4,860,551 - AO353_22190 0.82 +0.0
4,860,728 - -1.7
4,860,785 + -0.7
4,860,785 + -0.2
4,860,785 + -0.8
4,860,785 + +0.6
4,860,785 + -2.3
4,860,785 + -1.0
4,860,785 + -1.4
4,860,785 + +0.5
4,860,785 + +0.8
4,860,785 + -1.7
4,860,786 - -2.1
4,860,786 - +1.1
4,860,786 - +1.0
4,860,978 + AO353_22195 0.39 -0.1
4,861,120 + AO353_22195 0.60 +1.2
4,861,120 + AO353_22195 0.60 -1.0
4,861,121 - AO353_22195 0.60 +1.2
4,861,442 - -0.2
4,861,472 + -1.0
4,861,492 + AO353_22200 0.14 -1.6
4,861,590 + AO353_22200 0.35 +1.0
4,861,590 + AO353_22200 0.35 -0.3
4,861,590 + AO353_22200 0.35 +0.2
4,861,591 - AO353_22200 0.35 -1.2
4,861,591 - AO353_22200 0.35 -1.2
4,861,591 - AO353_22200 0.35 -0.5
4,861,591 - AO353_22200 0.35 -1.1
4,861,605 + AO353_22200 0.38 +0.4
4,861,605 + AO353_22200 0.38 -0.5
4,861,861 - -1.7
4,861,861 - -0.6
4,861,861 - -0.2
4,861,894 - -1.1
4,861,964 + -0.4
4,862,104 + AO353_22205 0.12 -1.2
4,862,104 + AO353_22205 0.12 +0.7
4,862,104 + AO353_22205 0.12 -1.2
4,862,104 + AO353_22205 0.12 -1.1
4,862,104 + AO353_22205 0.12 +1.6
4,862,104 + AO353_22205 0.12 +1.2
4,862,105 - AO353_22205 0.12 -1.1
4,862,105 - AO353_22205 0.12 -1.4
4,862,105 - AO353_22205 0.12 -0.2
4,862,105 - AO353_22205 0.12 -1.8
4,862,105 - AO353_22205 0.12 -1.2
4,862,105 - AO353_22205 0.12 -0.4
4,862,305 + AO353_22205 0.33 +0.5
4,862,305 + +1.0
4,862,305 + AO353_22205 0.33 -0.4
4,862,305 + AO353_22205 0.33 +0.3
4,862,305 + AO353_22205 0.33 +0.3
4,862,306 - AO353_22205 0.34 +0.8
4,862,306 - AO353_22205 0.34 -0.6
4,862,306 - AO353_22205 0.34 -0.2
4,862,306 - AO353_22205 0.34 -1.6
4,862,306 - AO353_22205 0.34 -1.3
4,862,306 - AO353_22205 0.34 -1.7
4,862,306 - AO353_22205 0.34 -0.3
4,862,306 - AO353_22205 0.34 -0.1
4,862,306 - AO353_22205 0.34 +0.9
4,862,332 + AO353_22205 0.36 -1.2
4,862,332 + AO353_22205 0.36 +0.5
4,862,332 + AO353_22205 0.36 +0.6
4,862,332 + AO353_22205 0.36 -0.2
4,862,333 - AO353_22205 0.36 +1.0
4,862,333 - AO353_22205 0.36 -2.1
4,862,333 - AO353_22205 0.36 -1.4
4,862,333 - AO353_22205 0.36 +0.3
4,862,352 - AO353_22205 0.38 +1.0

Or see this region's nucleotide sequence