Experiment: L-Aspartic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_22005 and AO353_22010 are separated by 41 nucleotides AO353_22010 and AO353_22015 are separated by 339 nucleotides AO353_22015 and AO353_22020 are separated by 28 nucleotides AO353_22020 and AO353_22025 are separated by 75 nucleotides
AO353_22005: AO353_22005 - transcription factor, at 4,820,538 to 4,821,221
_22005
AO353_22010: AO353_22010 - hypothetical protein, at 4,821,263 to 4,821,478
_22010
AO353_22015: AO353_22015 - short-chain dehydrogenase, at 4,821,818 to 4,823,008
_22015
AO353_22020: AO353_22020 - hypothetical protein, at 4,823,037 to 4,823,474
_22020
AO353_22025: AO353_22025 - iron-sulfur cluster repair di-iron protein, at 4,823,550 to 4,824,224
_22025
Position (kb) 4821
4822
4823
4824 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4820.875 kb on + strand, within AO353_22005 at 4820.875 kb on + strand, within AO353_22005 at 4820.875 kb on + strand, within AO353_22005 at 4820.875 kb on + strand, within AO353_22005 at 4820.875 kb on + strand, within AO353_22005 at 4820.875 kb on + strand, within AO353_22005 at 4820.876 kb on - strand, within AO353_22005 at 4820.876 kb on - strand, within AO353_22005 at 4820.876 kb on - strand, within AO353_22005 at 4820.876 kb on - strand, within AO353_22005 at 4820.876 kb on - strand, within AO353_22005 at 4820.876 kb on - strand, within AO353_22005 at 4820.876 kb on - strand, within AO353_22005 at 4820.876 kb on - strand, within AO353_22005 at 4820.931 kb on + strand, within AO353_22005 at 4820.931 kb on + strand, within AO353_22005 at 4820.931 kb on + strand, within AO353_22005 at 4820.931 kb on + strand, within AO353_22005 at 4820.932 kb on - strand at 4820.932 kb on - strand, within AO353_22005 at 4820.932 kb on - strand, within AO353_22005 at 4820.932 kb on - strand, within AO353_22005 at 4820.932 kb on - strand, within AO353_22005 at 4820.932 kb on - strand, within AO353_22005 at 4820.932 kb on - strand, within AO353_22005 at 4820.935 kb on + strand, within AO353_22005 at 4820.935 kb on + strand, within AO353_22005 at 4820.935 kb on + strand, within AO353_22005 at 4820.935 kb on + strand, within AO353_22005 at 4820.935 kb on + strand, within AO353_22005 at 4820.935 kb on + strand, within AO353_22005 at 4820.935 kb on + strand, within AO353_22005 at 4820.935 kb on + strand, within AO353_22005 at 4820.935 kb on + strand, within AO353_22005 at 4820.935 kb on + strand, within AO353_22005 at 4820.936 kb on - strand, within AO353_22005 at 4820.936 kb on - strand, within AO353_22005 at 4820.936 kb on - strand, within AO353_22005 at 4820.936 kb on - strand, within AO353_22005 at 4820.936 kb on - strand, within AO353_22005 at 4820.936 kb on - strand, within AO353_22005 at 4820.936 kb on - strand, within AO353_22005 at 4820.936 kb on - strand, within AO353_22005 at 4820.936 kb on - strand, within AO353_22005 at 4821.055 kb on - strand, within AO353_22005 at 4821.055 kb on - strand, within AO353_22005 at 4821.055 kb on - strand, within AO353_22005 at 4821.055 kb on - strand, within AO353_22005 at 4821.055 kb on - strand, within AO353_22005 at 4821.055 kb on - strand, within AO353_22005 at 4821.055 kb on - strand, within AO353_22005 at 4821.131 kb on + strand, within AO353_22005 at 4821.132 kb on - strand, within AO353_22005 at 4821.132 kb on - strand, within AO353_22005 at 4821.389 kb on + strand, within AO353_22010 at 4821.389 kb on + strand, within AO353_22010 at 4821.390 kb on - strand, within AO353_22010 at 4821.390 kb on - strand, within AO353_22010 at 4821.390 kb on - strand, within AO353_22010 at 4821.390 kb on - strand, within AO353_22010 at 4821.391 kb on + strand, within AO353_22010 at 4821.391 kb on + strand, within AO353_22010 at 4821.392 kb on - strand, within AO353_22010 at 4821.392 kb on - strand at 4821.392 kb on - strand, within AO353_22010 at 4821.442 kb on + strand, within AO353_22010 at 4821.443 kb on - strand, within AO353_22010 at 4821.466 kb on + strand at 4821.479 kb on + strand at 4821.479 kb on + strand at 4821.480 kb on - strand at 4821.480 kb on - strand at 4821.484 kb on + strand at 4821.485 kb on - strand at 4821.493 kb on - strand at 4821.493 kb on - strand at 4821.493 kb on - strand at 4821.503 kb on + strand at 4821.503 kb on + strand at 4821.503 kb on + strand at 4821.504 kb on - strand at 4821.504 kb on - strand at 4821.504 kb on - strand at 4821.578 kb on + strand at 4821.578 kb on + strand at 4821.598 kb on + strand at 4821.598 kb on + strand at 4821.598 kb on + strand at 4821.598 kb on + strand at 4821.598 kb on + strand at 4821.598 kb on + strand at 4821.598 kb on + strand at 4821.598 kb on + strand at 4821.598 kb on + strand at 4821.599 kb on - strand at 4821.599 kb on - strand at 4821.599 kb on - strand at 4821.599 kb on - strand at 4821.599 kb on - strand at 4821.599 kb on - strand at 4821.599 kb on - strand at 4821.599 kb on - strand at 4821.599 kb on - strand at 4821.599 kb on - strand at 4821.600 kb on + strand at 4821.600 kb on + strand at 4821.600 kb on + strand at 4821.600 kb on + strand at 4821.600 kb on + strand at 4821.601 kb on - strand at 4821.601 kb on - strand at 4821.601 kb on - strand at 4821.601 kb on - strand at 4821.601 kb on - strand at 4821.601 kb on - strand at 4821.739 kb on + strand at 4821.818 kb on - strand at 4821.818 kb on - strand at 4821.818 kb on - strand at 4821.818 kb on - strand at 4821.839 kb on - strand at 4822.246 kb on + strand, within AO353_22015 at 4822.246 kb on + strand, within AO353_22015 at 4822.246 kb on + strand, within AO353_22015 at 4822.246 kb on + strand, within AO353_22015 at 4822.246 kb on + strand, within AO353_22015 at 4822.246 kb on + strand, within AO353_22015 at 4822.246 kb on + strand, within AO353_22015 at 4822.246 kb on + strand, within AO353_22015 at 4822.246 kb on + strand, within AO353_22015 at 4822.247 kb on - strand, within AO353_22015 at 4822.247 kb on - strand, within AO353_22015 at 4822.247 kb on - strand, within AO353_22015 at 4822.247 kb on - strand, within AO353_22015 at 4822.247 kb on - strand, within AO353_22015 at 4822.247 kb on - strand, within AO353_22015 at 4822.250 kb on + strand, within AO353_22015 at 4822.304 kb on + strand, within AO353_22015 at 4822.508 kb on + strand, within AO353_22015 at 4822.508 kb on + strand, within AO353_22015 at 4822.508 kb on + strand, within AO353_22015 at 4822.508 kb on + strand, within AO353_22015 at 4822.509 kb on - strand, within AO353_22015 at 4822.509 kb on - strand, within AO353_22015 at 4822.509 kb on - strand, within AO353_22015 at 4822.652 kb on + strand, within AO353_22015 at 4823.040 kb on + strand at 4823.040 kb on + strand at 4823.040 kb on + strand at 4823.040 kb on + strand at 4823.040 kb on + strand at 4823.040 kb on + strand at 4823.040 kb on + strand at 4823.040 kb on + strand at 4823.040 kb on + strand at 4823.040 kb on + strand at 4823.040 kb on + strand at 4823.041 kb on - strand at 4823.041 kb on - strand at 4823.047 kb on - strand at 4823.047 kb on - strand at 4823.047 kb on - strand at 4823.190 kb on - strand, within AO353_22020 at 4823.218 kb on + strand, within AO353_22020 at 4823.218 kb on + strand, within AO353_22020 at 4823.218 kb on + strand, within AO353_22020 at 4823.218 kb on + strand, within AO353_22020 at 4823.218 kb on + strand, within AO353_22020 at 4823.218 kb on + strand, within AO353_22020 at 4823.218 kb on + strand, within AO353_22020 at 4823.218 kb on + strand, within AO353_22020 at 4823.219 kb on - strand, within AO353_22020 at 4823.219 kb on - strand, within AO353_22020 at 4823.219 kb on - strand, within AO353_22020 at 4823.219 kb on - strand, within AO353_22020 at 4823.219 kb on - strand, within AO353_22020 at 4823.219 kb on - strand, within AO353_22020 at 4823.219 kb on - strand, within AO353_22020 at 4823.220 kb on + strand, within AO353_22020 at 4823.221 kb on - strand, within AO353_22020 at 4823.221 kb on - strand, within AO353_22020 at 4823.221 kb on - strand, within AO353_22020 at 4823.291 kb on + strand, within AO353_22020 at 4823.291 kb on + strand, within AO353_22020 at 4823.291 kb on + strand, within AO353_22020 at 4823.340 kb on + strand, within AO353_22020 at 4823.340 kb on + strand, within AO353_22020 at 4823.340 kb on + strand, within AO353_22020 at 4823.340 kb on + strand, within AO353_22020 at 4823.341 kb on - strand, within AO353_22020 at 4823.341 kb on - strand, within AO353_22020 at 4823.341 kb on - strand, within AO353_22020 at 4823.341 kb on - strand, within AO353_22020 at 4823.341 kb on - strand, within AO353_22020 at 4823.460 kb on + strand at 4823.460 kb on + strand at 4823.461 kb on - strand at 4823.492 kb on + strand at 4823.493 kb on - strand at 4823.685 kb on + strand, within AO353_22025 at 4823.685 kb on + strand, within AO353_22025 at 4823.685 kb on + strand at 4823.686 kb on - strand, within AO353_22025
Per-strain Table
Position Strand Gene LocusTag Fraction L-Aspartic Acid (C) remove 4,820,875 + AO353_22005 0.49 +0.2 4,820,875 + AO353_22005 0.49 +0.6 4,820,875 + AO353_22005 0.49 -1.4 4,820,875 + AO353_22005 0.49 -1.2 4,820,875 + AO353_22005 0.49 +1.2 4,820,875 + AO353_22005 0.49 +0.0 4,820,876 - AO353_22005 0.49 -0.4 4,820,876 - AO353_22005 0.49 +0.4 4,820,876 - AO353_22005 0.49 +1.6 4,820,876 - AO353_22005 0.49 -0.5 4,820,876 - AO353_22005 0.49 -0.2 4,820,876 - AO353_22005 0.49 -0.2 4,820,876 - AO353_22005 0.49 -0.1 4,820,876 - AO353_22005 0.49 +2.6 4,820,931 + AO353_22005 0.57 +0.0 4,820,931 + AO353_22005 0.57 -0.7 4,820,931 + AO353_22005 0.57 -0.7 4,820,931 + AO353_22005 0.57 +1.0 4,820,932 - +0.0 4,820,932 - AO353_22005 0.58 -2.2 4,820,932 - AO353_22005 0.58 -0.2 4,820,932 - AO353_22005 0.58 -1.6 4,820,932 - AO353_22005 0.58 +0.4 4,820,932 - AO353_22005 0.58 -1.0 4,820,932 - AO353_22005 0.58 -1.0 4,820,935 + AO353_22005 0.58 +0.3 4,820,935 + AO353_22005 0.58 +0.6 4,820,935 + AO353_22005 0.58 +0.0 4,820,935 + AO353_22005 0.58 +0.3 4,820,935 + AO353_22005 0.58 +0.4 4,820,935 + AO353_22005 0.58 -0.5 4,820,935 + AO353_22005 0.58 +0.5 4,820,935 + AO353_22005 0.58 -0.7 4,820,935 + AO353_22005 0.58 -1.1 4,820,935 + AO353_22005 0.58 +0.3 4,820,936 - AO353_22005 0.58 +1.2 4,820,936 - AO353_22005 0.58 -0.5 4,820,936 - AO353_22005 0.58 -0.0 4,820,936 - AO353_22005 0.58 -1.5 4,820,936 - AO353_22005 0.58 +0.3 4,820,936 - AO353_22005 0.58 -1.7 4,820,936 - AO353_22005 0.58 -2.0 4,820,936 - AO353_22005 0.58 +0.6 4,820,936 - AO353_22005 0.58 +0.3 4,821,055 - AO353_22005 0.76 +1.0 4,821,055 - AO353_22005 0.76 +0.0 4,821,055 - AO353_22005 0.76 -1.2 4,821,055 - AO353_22005 0.76 +0.3 4,821,055 - AO353_22005 0.76 +0.0 4,821,055 - AO353_22005 0.76 +0.0 4,821,055 - AO353_22005 0.76 +0.4 4,821,131 + AO353_22005 0.87 +0.6 4,821,132 - AO353_22005 0.87 -0.7 4,821,132 - AO353_22005 0.87 -2.8 4,821,389 + AO353_22010 0.58 +0.9 4,821,389 + AO353_22010 0.58 -1.7 4,821,390 - AO353_22010 0.59 -1.1 4,821,390 - AO353_22010 0.59 -0.4 4,821,390 - AO353_22010 0.59 -1.7 4,821,390 - AO353_22010 0.59 +0.2 4,821,391 + AO353_22010 0.59 -0.9 4,821,391 + AO353_22010 0.59 -0.4 4,821,392 - AO353_22010 0.60 -0.1 4,821,392 - +0.6 4,821,392 - AO353_22010 0.60 -0.4 4,821,442 + AO353_22010 0.83 -0.2 4,821,443 - AO353_22010 0.83 +1.0 4,821,466 + -0.3 4,821,479 + -1.0 4,821,479 + -2.5 4,821,480 - +0.0 4,821,480 - -0.4 4,821,484 + -2.2 4,821,485 - -0.1 4,821,493 - -2.0 4,821,493 - +0.2 4,821,493 - -1.7 4,821,503 + +0.3 4,821,503 + +0.6 4,821,503 + +2.4 4,821,504 - -0.6 4,821,504 - -0.4 4,821,504 - -1.0 4,821,578 + -0.7 4,821,578 + -2.1 4,821,598 + -0.4 4,821,598 + +0.0 4,821,598 + +0.6 4,821,598 + -0.1 4,821,598 + +2.6 4,821,598 + +1.3 4,821,598 + +1.6 4,821,598 + +0.3 4,821,598 + +0.2 4,821,599 - -0.7 4,821,599 - +0.8 4,821,599 - +0.4 4,821,599 - -0.2 4,821,599 - +0.6 4,821,599 - -2.0 4,821,599 - +1.0 4,821,599 - +0.0 4,821,599 - -1.0 4,821,599 - -0.1 4,821,600 + -0.3 4,821,600 + +0.1 4,821,600 + +0.3 4,821,600 + -1.0 4,821,600 + +0.9 4,821,601 - -0.8 4,821,601 - +1.1 4,821,601 - -0.5 4,821,601 - -1.0 4,821,601 - +0.2 4,821,601 - -1.6 4,821,739 + +1.2 4,821,818 - -1.5 4,821,818 - -0.3 4,821,818 - -0.3 4,821,818 - +0.4 4,821,839 - -0.5 4,822,246 + AO353_22015 0.36 +0.5 4,822,246 + AO353_22015 0.36 -1.5 4,822,246 + AO353_22015 0.36 +1.0 4,822,246 + AO353_22015 0.36 +1.2 4,822,246 + AO353_22015 0.36 +0.5 4,822,246 + AO353_22015 0.36 -0.2 4,822,246 + AO353_22015 0.36 +0.6 4,822,246 + AO353_22015 0.36 +1.6 4,822,246 + AO353_22015 0.36 +0.3 4,822,247 - AO353_22015 0.36 +0.5 4,822,247 - AO353_22015 0.36 +1.2 4,822,247 - AO353_22015 0.36 +0.3 4,822,247 - AO353_22015 0.36 +0.0 4,822,247 - AO353_22015 0.36 +0.6 4,822,247 - AO353_22015 0.36 -0.7 4,822,250 + AO353_22015 0.36 +0.4 4,822,304 + AO353_22015 0.41 +0.4 4,822,508 + AO353_22015 0.58 -1.2 4,822,508 + AO353_22015 0.58 -0.3 4,822,508 + AO353_22015 0.58 +0.0 4,822,508 + AO353_22015 0.58 +1.0 4,822,509 - AO353_22015 0.58 +1.0 4,822,509 - AO353_22015 0.58 -0.7 4,822,509 - AO353_22015 0.58 -0.2 4,822,652 + AO353_22015 0.70 -0.5 4,823,040 + +0.4 4,823,040 + -0.1 4,823,040 + +0.0 4,823,040 + +0.6 4,823,040 + -1.1 4,823,040 + -2.2 4,823,040 + -1.7 4,823,040 + -0.9 4,823,040 + -0.2 4,823,040 + +0.3 4,823,040 + -0.2 4,823,041 - -0.4 4,823,041 - -1.6 4,823,047 - +0.6 4,823,047 - +0.7 4,823,047 - -0.5 4,823,190 - AO353_22020 0.35 +0.3 4,823,218 + AO353_22020 0.41 -0.2 4,823,218 + AO353_22020 0.41 -0.4 4,823,218 + AO353_22020 0.41 -0.7 4,823,218 + AO353_22020 0.41 -1.1 4,823,218 + AO353_22020 0.41 +0.3 4,823,218 + AO353_22020 0.41 -1.7 4,823,218 + AO353_22020 0.41 -0.7 4,823,218 + AO353_22020 0.41 -1.4 4,823,219 - AO353_22020 0.42 -1.5 4,823,219 - AO353_22020 0.42 -0.7 4,823,219 - AO353_22020 0.42 +0.0 4,823,219 - AO353_22020 0.42 -1.0 4,823,219 - AO353_22020 0.42 -1.5 4,823,219 - AO353_22020 0.42 +2.6 4,823,219 - AO353_22020 0.42 -0.5 4,823,220 + AO353_22020 0.42 -0.5 4,823,221 - AO353_22020 0.42 -1.1 4,823,221 - AO353_22020 0.42 -2.0 4,823,221 - AO353_22020 0.42 -0.4 4,823,291 + AO353_22020 0.58 -0.2 4,823,291 + AO353_22020 0.58 +0.3 4,823,291 + AO353_22020 0.58 -0.6 4,823,340 + AO353_22020 0.69 +0.9 4,823,340 + AO353_22020 0.69 +0.9 4,823,340 + AO353_22020 0.69 -0.2 4,823,340 + AO353_22020 0.69 +0.2 4,823,341 - AO353_22020 0.69 -1.1 4,823,341 - AO353_22020 0.69 +0.0 4,823,341 - AO353_22020 0.69 +0.5 4,823,341 - AO353_22020 0.69 +0.6 4,823,341 - AO353_22020 0.69 +0.3 4,823,460 + +0.5 4,823,460 + +0.4 4,823,461 - +3.0 4,823,492 + +0.2 4,823,493 - +0.0 4,823,685 + AO353_22025 0.20 +0.3 4,823,685 + AO353_22025 0.20 -1.2 4,823,685 + -1.0 4,823,686 - AO353_22025 0.20 -0.7
Or see this region's nucleotide sequence