Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_21370

Experiment: L-Aspartic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_21365 and AO353_21370 are separated by 116 nucleotidesAO353_21370 and AO353_21375 are separated by 212 nucleotides AO353_21365: AO353_21365 - Inositol 2-dehydrogenase (EC 1.1.1.18) (from data), at 4,677,461 to 4,678,471 _21365 AO353_21370: AO353_21370 - protein iolH, at 4,678,588 to 4,679,448 _21370 AO353_21375: AO353_21375 - oxidoreductase, at 4,679,661 to 4,680,713 _21375 Position (kb) 4678 4679 4680Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4677.845 kb on + strand, within AO353_21365at 4677.846 kb on - strand, within AO353_21365at 4677.950 kb on + strand, within AO353_21365at 4677.950 kb on + strand, within AO353_21365at 4677.950 kb on + strand, within AO353_21365at 4677.950 kb on + strand, within AO353_21365at 4677.951 kb on - strand, within AO353_21365at 4677.951 kb on - strand, within AO353_21365at 4677.951 kb on - strand, within AO353_21365at 4677.951 kb on - strand, within AO353_21365at 4678.025 kb on + strand, within AO353_21365at 4678.025 kb on + strand, within AO353_21365at 4678.025 kb on + strand, within AO353_21365at 4678.025 kb on + strand, within AO353_21365at 4678.026 kb on - strand, within AO353_21365at 4678.026 kb on - strand, within AO353_21365at 4678.026 kb on - strand, within AO353_21365at 4678.036 kb on - strand, within AO353_21365at 4678.036 kb on - strand, within AO353_21365at 4678.157 kb on + strand, within AO353_21365at 4678.158 kb on - strand, within AO353_21365at 4678.163 kb on + strand, within AO353_21365at 4678.463 kb on + strandat 4678.464 kb on - strandat 4678.601 kb on + strandat 4678.601 kb on + strandat 4678.609 kb on + strandat 4678.609 kb on + strandat 4678.609 kb on + strandat 4678.609 kb on + strandat 4678.609 kb on + strandat 4678.609 kb on + strandat 4678.610 kb on - strandat 4678.610 kb on - strandat 4678.610 kb on - strandat 4678.610 kb on - strandat 4678.610 kb on - strandat 4678.610 kb on - strandat 4678.610 kb on - strandat 4678.610 kb on - strandat 4678.610 kb on - strandat 4678.615 kb on + strandat 4678.615 kb on + strandat 4678.615 kb on + strandat 4678.615 kb on + strandat 4678.711 kb on + strand, within AO353_21370at 4678.711 kb on + strand, within AO353_21370at 4678.712 kb on - strand, within AO353_21370at 4678.804 kb on + strand, within AO353_21370at 4678.804 kb on + strand, within AO353_21370at 4678.804 kb on + strand, within AO353_21370at 4678.804 kb on + strand, within AO353_21370at 4678.805 kb on - strand, within AO353_21370at 4678.805 kb on - strand, within AO353_21370at 4678.805 kb on - strand, within AO353_21370at 4678.805 kb on - strand, within AO353_21370at 4678.805 kb on - strand, within AO353_21370at 4678.851 kb on + strand, within AO353_21370at 4678.852 kb on - strand, within AO353_21370at 4679.029 kb on + strand, within AO353_21370at 4679.029 kb on + strand, within AO353_21370at 4679.098 kb on + strand, within AO353_21370at 4679.098 kb on + strand, within AO353_21370at 4679.099 kb on - strand, within AO353_21370at 4679.099 kb on - strand, within AO353_21370at 4679.099 kb on - strand, within AO353_21370at 4679.099 kb on - strand, within AO353_21370at 4679.104 kb on + strand, within AO353_21370at 4679.104 kb on + strand, within AO353_21370at 4679.128 kb on + strand, within AO353_21370at 4679.129 kb on - strand, within AO353_21370at 4679.167 kb on + strand, within AO353_21370at 4679.209 kb on + strand, within AO353_21370at 4679.209 kb on + strand, within AO353_21370at 4679.209 kb on + strand, within AO353_21370at 4679.210 kb on - strand, within AO353_21370at 4679.210 kb on - strand, within AO353_21370at 4679.210 kb on - strand, within AO353_21370at 4679.210 kb on - strand, within AO353_21370at 4679.239 kb on + strand, within AO353_21370at 4679.239 kb on + strand, within AO353_21370at 4679.517 kb on + strandat 4679.517 kb on + strandat 4679.518 kb on - strandat 4679.518 kb on - strandat 4679.518 kb on - strandat 4679.518 kb on - strandat 4679.538 kb on - strandat 4679.538 kb on - strandat 4679.624 kb on + strandat 4679.625 kb on - strandat 4679.625 kb on - strandat 4679.625 kb on - strandat 4679.625 kb on - strandat 4679.723 kb on + strandat 4679.723 kb on + strandat 4679.723 kb on + strandat 4679.723 kb on + strandat 4679.724 kb on - strandat 4679.724 kb on - strandat 4679.724 kb on - strandat 4679.724 kb on - strandat 4679.724 kb on - strandat 4679.724 kb on - strandat 4679.724 kb on - strandat 4679.782 kb on + strand, within AO353_21375at 4679.783 kb on - strand, within AO353_21375at 4679.783 kb on - strand, within AO353_21375at 4680.015 kb on + strand, within AO353_21375at 4680.109 kb on + strand, within AO353_21375at 4680.109 kb on + strand, within AO353_21375at 4680.109 kb on + strand, within AO353_21375at 4680.109 kb on + strand, within AO353_21375at 4680.110 kb on - strand, within AO353_21375at 4680.110 kb on - strand, within AO353_21375at 4680.110 kb on - strand, within AO353_21375at 4680.225 kb on + strand, within AO353_21375at 4680.225 kb on + strand, within AO353_21375at 4680.241 kb on - strand, within AO353_21375at 4680.323 kb on + strand, within AO353_21375at 4680.323 kb on + strand, within AO353_21375at 4680.323 kb on + strand, within AO353_21375at 4680.324 kb on - strand, within AO353_21375at 4680.324 kb on - strand, within AO353_21375at 4680.324 kb on - strand, within AO353_21375at 4680.324 kb on - strand, within AO353_21375at 4680.381 kb on + strand, within AO353_21375

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
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4,677,845 + AO353_21365 0.38 +0.5
4,677,846 - AO353_21365 0.38 -0.9
4,677,950 + AO353_21365 0.48 +0.1
4,677,950 + AO353_21365 0.48 +1.4
4,677,950 + AO353_21365 0.48 -1.4
4,677,950 + AO353_21365 0.48 +0.4
4,677,951 - AO353_21365 0.48 +0.3
4,677,951 - AO353_21365 0.48 +0.7
4,677,951 - AO353_21365 0.48 -1.3
4,677,951 - AO353_21365 0.48 +1.3
4,678,025 + AO353_21365 0.56 -2.2
4,678,025 + AO353_21365 0.56 +0.4
4,678,025 + AO353_21365 0.56 +0.6
4,678,025 + AO353_21365 0.56 +1.2
4,678,026 - AO353_21365 0.56 -0.6
4,678,026 - AO353_21365 0.56 -0.3
4,678,026 - AO353_21365 0.56 +0.0
4,678,036 - AO353_21365 0.57 -0.4
4,678,036 - AO353_21365 0.57 -1.5
4,678,157 + AO353_21365 0.69 +0.7
4,678,158 - AO353_21365 0.69 +0.8
4,678,163 + AO353_21365 0.69 +0.5
4,678,463 + -0.5
4,678,464 - +0.1
4,678,601 + +0.1
4,678,601 + +1.5
4,678,609 + -1.3
4,678,609 + -0.4
4,678,609 + -0.3
4,678,609 + +0.6
4,678,609 + +0.3
4,678,609 + -1.5
4,678,610 - +0.1
4,678,610 - -0.4
4,678,610 - +0.1
4,678,610 - +0.5
4,678,610 - +0.2
4,678,610 - +0.2
4,678,610 - +2.0
4,678,610 - -1.4
4,678,610 - +0.5
4,678,615 + -1.0
4,678,615 + +0.7
4,678,615 + -0.4
4,678,615 + +0.3
4,678,711 + AO353_21370 0.14 -1.5
4,678,711 + AO353_21370 0.14 +0.7
4,678,712 - AO353_21370 0.14 -1.5
4,678,804 + AO353_21370 0.25 -0.1
4,678,804 + AO353_21370 0.25 +0.3
4,678,804 + AO353_21370 0.25 -0.9
4,678,804 + AO353_21370 0.25 -0.3
4,678,805 - AO353_21370 0.25 -0.5
4,678,805 - AO353_21370 0.25 +1.7
4,678,805 - AO353_21370 0.25 -0.0
4,678,805 - AO353_21370 0.25 -0.2
4,678,805 - AO353_21370 0.25 -0.1
4,678,851 + AO353_21370 0.31 +1.1
4,678,852 - AO353_21370 0.31 -0.1
4,679,029 + AO353_21370 0.51 -0.2
4,679,029 + AO353_21370 0.51 +3.5
4,679,098 + AO353_21370 0.59 +0.8
4,679,098 + AO353_21370 0.59 +1.1
4,679,099 - AO353_21370 0.59 -3.0
4,679,099 - AO353_21370 0.59 +0.7
4,679,099 - AO353_21370 0.59 +0.4
4,679,099 - AO353_21370 0.59 -0.9
4,679,104 + AO353_21370 0.60 -0.1
4,679,104 + AO353_21370 0.60 -0.2
4,679,128 + AO353_21370 0.63 +0.4
4,679,129 - AO353_21370 0.63 +1.3
4,679,167 + AO353_21370 0.67 -1.3
4,679,209 + AO353_21370 0.72 +1.7
4,679,209 + AO353_21370 0.72 +0.7
4,679,209 + AO353_21370 0.72 +0.7
4,679,210 - AO353_21370 0.72 -0.1
4,679,210 - AO353_21370 0.72 +0.7
4,679,210 - AO353_21370 0.72 +1.7
4,679,210 - AO353_21370 0.72 -1.3
4,679,239 + AO353_21370 0.76 -0.8
4,679,239 + AO353_21370 0.76 +1.0
4,679,517 + -0.4
4,679,517 + +1.0
4,679,518 - +1.7
4,679,518 - -0.3
4,679,518 - -0.3
4,679,518 - +0.1
4,679,538 - -0.3
4,679,538 - +0.0
4,679,624 + -0.3
4,679,625 - +2.3
4,679,625 - +1.0
4,679,625 - +1.1
4,679,625 - -0.3
4,679,723 + -1.2
4,679,723 + -0.5
4,679,723 + -1.5
4,679,723 + +0.6
4,679,724 - -0.9
4,679,724 - -0.3
4,679,724 - -0.3
4,679,724 - -1.5
4,679,724 - -0.9
4,679,724 - -0.9
4,679,724 - +0.7
4,679,782 + AO353_21375 0.11 +0.5
4,679,783 - AO353_21375 0.12 -0.3
4,679,783 - AO353_21375 0.12 +0.1
4,680,015 + AO353_21375 0.34 -1.1
4,680,109 + AO353_21375 0.43 -0.8
4,680,109 + AO353_21375 0.43 -0.5
4,680,109 + AO353_21375 0.43 +0.8
4,680,109 + AO353_21375 0.43 -0.0
4,680,110 - AO353_21375 0.43 -0.8
4,680,110 - AO353_21375 0.43 +1.7
4,680,110 - AO353_21375 0.43 -1.2
4,680,225 + AO353_21375 0.54 -1.9
4,680,225 + AO353_21375 0.54 -0.4
4,680,241 - AO353_21375 0.55 +0.9
4,680,323 + AO353_21375 0.63 -0.5
4,680,323 + AO353_21375 0.63 -1.0
4,680,323 + AO353_21375 0.63 +0.6
4,680,324 - AO353_21375 0.63 -0.9
4,680,324 - AO353_21375 0.63 -0.3
4,680,324 - AO353_21375 0.63 +1.0
4,680,324 - AO353_21375 0.63 -0.9
4,680,381 + AO353_21375 0.68 -1.9

Or see this region's nucleotide sequence