Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_20865

Experiment: L-Aspartic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_20850 and AO353_20855 are separated by 128 nucleotidesAO353_20855 and AO353_20860 are separated by 163 nucleotidesAO353_20860 and AO353_20865 are separated by 72 nucleotidesAO353_20865 and AO353_20870 are separated by 293 nucleotidesAO353_20870 and AO353_20875 are separated by 386 nucleotides AO353_20850: AO353_20850 - hypothetical protein, at 4,565,227 to 4,565,430 _20850 AO353_20855: AO353_20855 - hypothetical protein, at 4,565,559 to 4,565,864 _20855 AO353_20860: AO353_20860 - hypothetical protein, at 4,566,028 to 4,566,342 _20860 AO353_20865: AO353_20865 - cold-shock protein, at 4,566,415 to 4,566,627 _20865 AO353_20870: AO353_20870 - hypothetical protein, at 4,566,921 to 4,567,220 _20870 AO353_20875: AO353_20875 - threonine--tRNA ligase, at 4,567,607 to 4,569,529 _20875 Position (kb) 4566 4567Strain fitness (log2 ratio) -2 -1 0 1 2at 4565.469 kb on - strandat 4565.501 kb on + strandat 4565.501 kb on + strandat 4565.501 kb on + strandat 4565.501 kb on + strandat 4565.502 kb on - strandat 4565.502 kb on - strandat 4565.502 kb on - strandat 4565.502 kb on - strandat 4565.502 kb on - strandat 4565.502 kb on - strandat 4565.519 kb on + strandat 4565.520 kb on - strandat 4565.539 kb on + strandat 4565.540 kb on - strandat 4565.577 kb on - strandat 4565.597 kb on - strand, within AO353_20855at 4565.597 kb on - strand, within AO353_20855at 4565.597 kb on - strand, within AO353_20855at 4565.636 kb on + strand, within AO353_20855at 4565.757 kb on + strand, within AO353_20855at 4565.758 kb on - strand, within AO353_20855at 4565.761 kb on + strand, within AO353_20855at 4565.761 kb on + strand, within AO353_20855at 4565.761 kb on + strand, within AO353_20855at 4565.761 kb on + strand, within AO353_20855at 4565.761 kb on + strand, within AO353_20855at 4565.761 kb on + strand, within AO353_20855at 4565.761 kb on + strand, within AO353_20855at 4565.761 kb on + strand, within AO353_20855at 4565.761 kb on + strand, within AO353_20855at 4565.761 kb on + strand, within AO353_20855at 4565.761 kb on + strand, within AO353_20855at 4565.761 kb on + strand, within AO353_20855at 4565.761 kb on + strand, within AO353_20855at 4565.761 kb on + strand, within AO353_20855at 4565.761 kb on + strand, within AO353_20855at 4565.762 kb on - strand, within AO353_20855at 4565.762 kb on - strand, within AO353_20855at 4565.762 kb on - strand, within AO353_20855at 4565.762 kb on - strand, within AO353_20855at 4565.762 kb on - strand, within AO353_20855at 4565.762 kb on - strand, within AO353_20855at 4565.762 kb on - strand, within AO353_20855at 4565.762 kb on - strand, within AO353_20855at 4565.762 kb on - strand, within AO353_20855at 4565.762 kb on - strand, within AO353_20855at 4565.762 kb on - strand, within AO353_20855at 4565.762 kb on - strand, within AO353_20855at 4565.762 kb on - strand, within AO353_20855at 4565.762 kb on - strand, within AO353_20855at 4565.762 kb on - strand, within AO353_20855at 4565.762 kb on - strand, within AO353_20855at 4565.762 kb on - strand, within AO353_20855at 4565.762 kb on - strand, within AO353_20855at 4565.803 kb on + strand, within AO353_20855at 4565.803 kb on + strand, within AO353_20855at 4565.804 kb on - strand, within AO353_20855at 4565.804 kb on - strand, within AO353_20855at 4565.847 kb on + strandat 4565.847 kb on + strandat 4565.847 kb on + strandat 4565.847 kb on + strandat 4565.847 kb on + strandat 4565.847 kb on + strandat 4565.847 kb on + strandat 4565.848 kb on - strandat 4565.848 kb on - strandat 4565.848 kb on - strandat 4565.848 kb on - strandat 4565.848 kb on - strandat 4565.855 kb on + strandat 4565.855 kb on + strandat 4565.855 kb on + strandat 4565.859 kb on + strandat 4565.859 kb on + strandat 4565.859 kb on + strandat 4565.859 kb on + strandat 4565.859 kb on + strandat 4565.859 kb on + strandat 4565.860 kb on - strandat 4565.860 kb on - strandat 4565.860 kb on - strandat 4565.860 kb on - strandat 4565.860 kb on - strandat 4565.875 kb on - strandat 4565.875 kb on - strandat 4565.875 kb on - strandat 4565.909 kb on + strandat 4565.909 kb on + strandat 4565.909 kb on + strandat 4565.909 kb on + strandat 4565.910 kb on - strandat 4566.010 kb on + strandat 4566.010 kb on + strandat 4566.011 kb on - strandat 4566.054 kb on + strandat 4566.093 kb on + strand, within AO353_20860at 4566.093 kb on + strand, within AO353_20860at 4566.094 kb on - strand, within AO353_20860at 4566.122 kb on + strand, within AO353_20860at 4566.274 kb on + strand, within AO353_20860at 4566.275 kb on - strand, within AO353_20860at 4566.400 kb on + strandat 4566.401 kb on - strandat 4566.416 kb on + strandat 4566.417 kb on - strandat 4566.532 kb on + strand, within AO353_20865at 4566.532 kb on + strand, within AO353_20865at 4566.532 kb on + strand, within AO353_20865at 4566.533 kb on - strand, within AO353_20865at 4566.600 kb on + strand, within AO353_20865at 4566.600 kb on + strand, within AO353_20865at 4566.600 kb on + strand, within AO353_20865at 4566.621 kb on + strandat 4566.622 kb on - strandat 4566.632 kb on + strandat 4566.632 kb on + strandat 4566.632 kb on + strandat 4566.632 kb on + strandat 4566.633 kb on - strandat 4566.647 kb on + strandat 4566.647 kb on + strandat 4566.647 kb on + strandat 4566.648 kb on - strandat 4566.649 kb on + strandat 4566.649 kb on + strandat 4566.649 kb on + strandat 4566.650 kb on - strandat 4566.650 kb on - strandat 4566.650 kb on - strandat 4566.650 kb on - strandat 4566.650 kb on - strandat 4566.650 kb on - strandat 4566.696 kb on + strandat 4566.696 kb on + strandat 4566.696 kb on + strandat 4566.697 kb on - strandat 4566.697 kb on - strandat 4566.701 kb on + strandat 4566.702 kb on - strandat 4566.702 kb on - strandat 4566.773 kb on + strandat 4566.773 kb on + strandat 4566.773 kb on + strandat 4566.773 kb on + strandat 4566.773 kb on + strandat 4566.773 kb on + strandat 4566.774 kb on - strandat 4566.774 kb on - strandat 4566.774 kb on - strandat 4566.774 kb on - strandat 4566.774 kb on - strandat 4566.774 kb on - strandat 4566.776 kb on - strandat 4566.815 kb on - strandat 4566.849 kb on - strandat 4566.849 kb on - strandat 4566.849 kb on - strandat 4566.877 kb on + strandat 4566.923 kb on - strandat 4566.923 kb on - strandat 4567.025 kb on + strand, within AO353_20870at 4567.025 kb on + strand, within AO353_20870at 4567.025 kb on + strand, within AO353_20870at 4567.025 kb on + strand, within AO353_20870at 4567.026 kb on - strand, within AO353_20870at 4567.026 kb on - strand, within AO353_20870at 4567.026 kb on - strand, within AO353_20870at 4567.121 kb on + strand, within AO353_20870at 4567.121 kb on + strand, within AO353_20870at 4567.121 kb on + strand, within AO353_20870at 4567.121 kb on + strand, within AO353_20870at 4567.121 kb on + strand, within AO353_20870at 4567.122 kb on - strand, within AO353_20870at 4567.122 kb on - strand, within AO353_20870at 4567.122 kb on - strand, within AO353_20870at 4567.123 kb on + strand, within AO353_20870at 4567.123 kb on + strand, within AO353_20870at 4567.123 kb on + strand, within AO353_20870at 4567.123 kb on + strand, within AO353_20870at 4567.124 kb on - strand, within AO353_20870at 4567.124 kb on - strand, within AO353_20870at 4567.124 kb on - strand, within AO353_20870at 4567.124 kb on - strand, within AO353_20870at 4567.124 kb on - strand, within AO353_20870at 4567.124 kb on - strand, within AO353_20870at 4567.124 kb on - strand, within AO353_20870at 4567.124 kb on - strand, within AO353_20870at 4567.212 kb on - strandat 4567.220 kb on + strandat 4567.220 kb on + strandat 4567.220 kb on + strandat 4567.220 kb on + strandat 4567.220 kb on + strandat 4567.221 kb on - strandat 4567.221 kb on - strandat 4567.221 kb on - strandat 4567.265 kb on + strandat 4567.265 kb on + strandat 4567.266 kb on - strandat 4567.266 kb on - strandat 4567.281 kb on + strandat 4567.281 kb on + strandat 4567.282 kb on - strandat 4567.282 kb on - strandat 4567.282 kb on - strandat 4567.282 kb on - strandat 4567.303 kb on - strandat 4567.501 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
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4,565,469 - +0.8
4,565,501 + -1.1
4,565,501 + -0.1
4,565,501 + -0.1
4,565,501 + -1.9
4,565,502 - +0.3
4,565,502 - -1.7
4,565,502 - -1.1
4,565,502 - -0.4
4,565,502 - -1.6
4,565,502 - -2.2
4,565,519 + +0.2
4,565,520 - -0.6
4,565,539 + -0.0
4,565,540 - +2.0
4,565,577 - +0.6
4,565,597 - AO353_20855 0.12 -1.9
4,565,597 - AO353_20855 0.12 -1.0
4,565,597 - AO353_20855 0.12 +0.3
4,565,636 + AO353_20855 0.25 -1.0
4,565,757 + AO353_20855 0.65 -1.6
4,565,758 - AO353_20855 0.65 -0.7
4,565,761 + AO353_20855 0.66 +0.9
4,565,761 + AO353_20855 0.66 -0.2
4,565,761 + AO353_20855 0.66 -2.6
4,565,761 + AO353_20855 0.66 -0.7
4,565,761 + AO353_20855 0.66 +1.8
4,565,761 + AO353_20855 0.66 -0.2
4,565,761 + AO353_20855 0.66 -0.6
4,565,761 + AO353_20855 0.66 +0.2
4,565,761 + AO353_20855 0.66 +0.8
4,565,761 + AO353_20855 0.66 +1.8
4,565,761 + AO353_20855 0.66 -0.2
4,565,761 + AO353_20855 0.66 -0.6
4,565,761 + AO353_20855 0.66 +0.8
4,565,761 + AO353_20855 0.66 +0.3
4,565,761 + AO353_20855 0.66 -0.4
4,565,762 - AO353_20855 0.66 -1.2
4,565,762 - AO353_20855 0.66 +0.4
4,565,762 - AO353_20855 0.66 -2.2
4,565,762 - AO353_20855 0.66 +0.3
4,565,762 - AO353_20855 0.66 +0.7
4,565,762 - AO353_20855 0.66 -1.1
4,565,762 - AO353_20855 0.66 -1.1
4,565,762 - AO353_20855 0.66 -0.8
4,565,762 - AO353_20855 0.66 -0.8
4,565,762 - AO353_20855 0.66 +0.8
4,565,762 - AO353_20855 0.66 -1.2
4,565,762 - AO353_20855 0.66 -0.5
4,565,762 - AO353_20855 0.66 +1.3
4,565,762 - AO353_20855 0.66 +1.2
4,565,762 - AO353_20855 0.66 -0.5
4,565,762 - AO353_20855 0.66 -1.2
4,565,762 - AO353_20855 0.66 -0.7
4,565,762 - AO353_20855 0.66 -0.8
4,565,803 + AO353_20855 0.80 -1.6
4,565,803 + AO353_20855 0.80 +0.7
4,565,804 - AO353_20855 0.80 -1.4
4,565,804 - AO353_20855 0.80 -2.2
4,565,847 + +1.3
4,565,847 + +0.9
4,565,847 + +0.2
4,565,847 + +1.1
4,565,847 + +0.0
4,565,847 + -1.6
4,565,847 + -1.1
4,565,848 - -0.6
4,565,848 - +1.5
4,565,848 - -0.7
4,565,848 - -0.8
4,565,848 - -0.4
4,565,855 + -0.7
4,565,855 + -1.9
4,565,855 + +0.4
4,565,859 + -0.1
4,565,859 + +0.3
4,565,859 + -0.9
4,565,859 + +0.4
4,565,859 + +0.9
4,565,859 + -0.4
4,565,860 - +0.8
4,565,860 - -1.8
4,565,860 - -1.1
4,565,860 - -0.2
4,565,860 - -2.5
4,565,875 - -1.1
4,565,875 - -1.3
4,565,875 - -1.1
4,565,909 + +0.3
4,565,909 + +0.5
4,565,909 + +2.5
4,565,909 + +0.4
4,565,910 - -0.2
4,566,010 + -0.3
4,566,010 + -0.6
4,566,011 - -0.2
4,566,054 + -0.4
4,566,093 + AO353_20860 0.21 +0.2
4,566,093 + AO353_20860 0.21 -0.5
4,566,094 - AO353_20860 0.21 +0.2
4,566,122 + AO353_20860 0.30 +0.3
4,566,274 + AO353_20860 0.78 -0.2
4,566,275 - AO353_20860 0.78 -0.1
4,566,400 + -1.0
4,566,401 - -0.8
4,566,416 + -0.2
4,566,417 - -0.3
4,566,532 + AO353_20865 0.55 -0.8
4,566,532 + AO353_20865 0.55 +0.2
4,566,532 + AO353_20865 0.55 +1.2
4,566,533 - AO353_20865 0.55 +0.7
4,566,600 + AO353_20865 0.87 +1.7
4,566,600 + AO353_20865 0.87 -0.6
4,566,600 + AO353_20865 0.87 -0.6
4,566,621 + -2.5
4,566,622 - +0.4
4,566,632 + +0.2
4,566,632 + -1.1
4,566,632 + -0.6
4,566,632 + +0.9
4,566,633 - -0.3
4,566,647 + -1.3
4,566,647 + +0.2
4,566,647 + -0.6
4,566,648 - -0.3
4,566,649 + +0.4
4,566,649 + +0.7
4,566,649 + +0.2
4,566,650 - -1.7
4,566,650 - -0.6
4,566,650 - +0.2
4,566,650 - -0.5
4,566,650 - +0.4
4,566,650 - +0.3
4,566,696 + +0.5
4,566,696 + -0.2
4,566,696 + -0.8
4,566,697 - +1.0
4,566,697 - +0.1
4,566,701 + -0.6
4,566,702 - -1.2
4,566,702 - -0.4
4,566,773 + +0.2
4,566,773 + -0.3
4,566,773 + +0.3
4,566,773 + -0.8
4,566,773 + +2.3
4,566,773 + +2.0
4,566,774 - -0.0
4,566,774 - +0.7
4,566,774 - -1.0
4,566,774 - -1.3
4,566,774 - -0.7
4,566,774 - +1.5
4,566,776 - -0.1
4,566,815 - +1.2
4,566,849 - -0.4
4,566,849 - -2.2
4,566,849 - -1.1
4,566,877 + +0.2
4,566,923 - +0.5
4,566,923 - -0.8
4,567,025 + AO353_20870 0.35 -0.8
4,567,025 + AO353_20870 0.35 +0.2
4,567,025 + AO353_20870 0.35 -2.2
4,567,025 + AO353_20870 0.35 -0.0
4,567,026 - AO353_20870 0.35 -1.2
4,567,026 - AO353_20870 0.35 +0.3
4,567,026 - AO353_20870 0.35 +1.8
4,567,121 + AO353_20870 0.67 +1.8
4,567,121 + AO353_20870 0.67 +1.2
4,567,121 + AO353_20870 0.67 +1.4
4,567,121 + AO353_20870 0.67 -1.7
4,567,121 + AO353_20870 0.67 +0.8
4,567,122 - AO353_20870 0.67 -0.4
4,567,122 - AO353_20870 0.67 -0.8
4,567,122 - AO353_20870 0.67 -0.9
4,567,123 + AO353_20870 0.67 -0.2
4,567,123 + AO353_20870 0.67 -0.1
4,567,123 + AO353_20870 0.67 +0.8
4,567,123 + AO353_20870 0.67 +0.9
4,567,124 - AO353_20870 0.68 -0.4
4,567,124 - AO353_20870 0.68 -1.1
4,567,124 - AO353_20870 0.68 +1.4
4,567,124 - AO353_20870 0.68 +0.5
4,567,124 - AO353_20870 0.68 -1.6
4,567,124 - AO353_20870 0.68 -0.9
4,567,124 - AO353_20870 0.68 -0.2
4,567,124 - AO353_20870 0.68 -1.2
4,567,212 - +0.8
4,567,220 + -0.4
4,567,220 + +1.8
4,567,220 + -1.1
4,567,220 + +0.4
4,567,220 + -0.5
4,567,221 - -0.8
4,567,221 - -1.2
4,567,221 - +0.8
4,567,265 + -0.4
4,567,265 + -0.4
4,567,266 - -0.6
4,567,266 - +1.2
4,567,281 + +0.1
4,567,281 + +0.2
4,567,282 - +0.1
4,567,282 - +0.3
4,567,282 - -0.8
4,567,282 - -1.2
4,567,303 - +0.0
4,567,501 + -0.1

Or see this region's nucleotide sequence