Experiment: L-Aspartic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_20850 and AO353_20855 are separated by 128 nucleotides AO353_20855 and AO353_20860 are separated by 163 nucleotides AO353_20860 and AO353_20865 are separated by 72 nucleotides AO353_20865 and AO353_20870 are separated by 293 nucleotides AO353_20870 and AO353_20875 are separated by 386 nucleotides
AO353_20850: AO353_20850 - hypothetical protein, at 4,565,227 to 4,565,430
_20850
AO353_20855: AO353_20855 - hypothetical protein, at 4,565,559 to 4,565,864
_20855
AO353_20860: AO353_20860 - hypothetical protein, at 4,566,028 to 4,566,342
_20860
AO353_20865: AO353_20865 - cold-shock protein, at 4,566,415 to 4,566,627
_20865
AO353_20870: AO353_20870 - hypothetical protein, at 4,566,921 to 4,567,220
_20870
AO353_20875: AO353_20875 - threonine--tRNA ligase, at 4,567,607 to 4,569,529
_20875
Position (kb)
4566
4567 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4565.469 kb on - strand at 4565.501 kb on + strand at 4565.501 kb on + strand at 4565.501 kb on + strand at 4565.501 kb on + strand at 4565.502 kb on - strand at 4565.502 kb on - strand at 4565.502 kb on - strand at 4565.502 kb on - strand at 4565.502 kb on - strand at 4565.502 kb on - strand at 4565.519 kb on + strand at 4565.520 kb on - strand at 4565.539 kb on + strand at 4565.540 kb on - strand at 4565.577 kb on - strand at 4565.597 kb on - strand, within AO353_20855 at 4565.597 kb on - strand, within AO353_20855 at 4565.597 kb on - strand, within AO353_20855 at 4565.636 kb on + strand, within AO353_20855 at 4565.757 kb on + strand, within AO353_20855 at 4565.758 kb on - strand, within AO353_20855 at 4565.761 kb on + strand, within AO353_20855 at 4565.761 kb on + strand, within AO353_20855 at 4565.761 kb on + strand, within AO353_20855 at 4565.761 kb on + strand, within AO353_20855 at 4565.761 kb on + strand, within AO353_20855 at 4565.761 kb on + strand, within AO353_20855 at 4565.761 kb on + strand, within AO353_20855 at 4565.761 kb on + strand, within AO353_20855 at 4565.761 kb on + strand, within AO353_20855 at 4565.761 kb on + strand, within AO353_20855 at 4565.761 kb on + strand, within AO353_20855 at 4565.761 kb on + strand, within AO353_20855 at 4565.761 kb on + strand, within AO353_20855 at 4565.761 kb on + strand, within AO353_20855 at 4565.761 kb on + strand, within AO353_20855 at 4565.762 kb on - strand, within AO353_20855 at 4565.762 kb on - strand, within AO353_20855 at 4565.762 kb on - strand, within AO353_20855 at 4565.762 kb on - strand, within AO353_20855 at 4565.762 kb on - strand, within AO353_20855 at 4565.762 kb on - strand, within AO353_20855 at 4565.762 kb on - strand, within AO353_20855 at 4565.762 kb on - strand, within AO353_20855 at 4565.762 kb on - strand, within AO353_20855 at 4565.762 kb on - strand, within AO353_20855 at 4565.762 kb on - strand, within AO353_20855 at 4565.762 kb on - strand, within AO353_20855 at 4565.762 kb on - strand, within AO353_20855 at 4565.762 kb on - strand, within AO353_20855 at 4565.762 kb on - strand, within AO353_20855 at 4565.762 kb on - strand, within AO353_20855 at 4565.762 kb on - strand, within AO353_20855 at 4565.762 kb on - strand, within AO353_20855 at 4565.803 kb on + strand, within AO353_20855 at 4565.803 kb on + strand, within AO353_20855 at 4565.804 kb on - strand, within AO353_20855 at 4565.804 kb on - strand, within AO353_20855 at 4565.847 kb on + strand at 4565.847 kb on + strand at 4565.847 kb on + strand at 4565.847 kb on + strand at 4565.847 kb on + strand at 4565.847 kb on + strand at 4565.847 kb on + strand at 4565.848 kb on - strand at 4565.848 kb on - strand at 4565.848 kb on - strand at 4565.848 kb on - strand at 4565.848 kb on - strand at 4565.855 kb on + strand at 4565.855 kb on + strand at 4565.855 kb on + strand at 4565.859 kb on + strand at 4565.859 kb on + strand at 4565.859 kb on + strand at 4565.859 kb on + strand at 4565.859 kb on + strand at 4565.859 kb on + strand at 4565.860 kb on - strand at 4565.860 kb on - strand at 4565.860 kb on - strand at 4565.860 kb on - strand at 4565.860 kb on - strand at 4565.875 kb on - strand at 4565.875 kb on - strand at 4565.875 kb on - strand at 4565.909 kb on + strand at 4565.909 kb on + strand at 4565.909 kb on + strand at 4565.909 kb on + strand at 4565.910 kb on - strand at 4566.010 kb on + strand at 4566.010 kb on + strand at 4566.011 kb on - strand at 4566.054 kb on + strand at 4566.093 kb on + strand, within AO353_20860 at 4566.093 kb on + strand, within AO353_20860 at 4566.094 kb on - strand, within AO353_20860 at 4566.122 kb on + strand, within AO353_20860 at 4566.274 kb on + strand, within AO353_20860 at 4566.275 kb on - strand, within AO353_20860 at 4566.400 kb on + strand at 4566.401 kb on - strand at 4566.416 kb on + strand at 4566.417 kb on - strand at 4566.532 kb on + strand, within AO353_20865 at 4566.532 kb on + strand, within AO353_20865 at 4566.532 kb on + strand, within AO353_20865 at 4566.533 kb on - strand, within AO353_20865 at 4566.600 kb on + strand, within AO353_20865 at 4566.600 kb on + strand, within AO353_20865 at 4566.600 kb on + strand, within AO353_20865 at 4566.621 kb on + strand at 4566.622 kb on - strand at 4566.632 kb on + strand at 4566.632 kb on + strand at 4566.632 kb on + strand at 4566.632 kb on + strand at 4566.633 kb on - strand at 4566.647 kb on + strand at 4566.647 kb on + strand at 4566.647 kb on + strand at 4566.648 kb on - strand at 4566.649 kb on + strand at 4566.649 kb on + strand at 4566.649 kb on + strand at 4566.650 kb on - strand at 4566.650 kb on - strand at 4566.650 kb on - strand at 4566.650 kb on - strand at 4566.650 kb on - strand at 4566.650 kb on - strand at 4566.696 kb on + strand at 4566.696 kb on + strand at 4566.696 kb on + strand at 4566.697 kb on - strand at 4566.697 kb on - strand at 4566.701 kb on + strand at 4566.702 kb on - strand at 4566.702 kb on - strand at 4566.773 kb on + strand at 4566.773 kb on + strand at 4566.773 kb on + strand at 4566.773 kb on + strand at 4566.773 kb on + strand at 4566.773 kb on + strand at 4566.774 kb on - strand at 4566.774 kb on - strand at 4566.774 kb on - strand at 4566.774 kb on - strand at 4566.774 kb on - strand at 4566.774 kb on - strand at 4566.776 kb on - strand at 4566.815 kb on - strand at 4566.849 kb on - strand at 4566.849 kb on - strand at 4566.849 kb on - strand at 4566.877 kb on + strand at 4566.923 kb on - strand at 4566.923 kb on - strand at 4567.025 kb on + strand, within AO353_20870 at 4567.025 kb on + strand, within AO353_20870 at 4567.025 kb on + strand, within AO353_20870 at 4567.025 kb on + strand, within AO353_20870 at 4567.026 kb on - strand, within AO353_20870 at 4567.026 kb on - strand, within AO353_20870 at 4567.026 kb on - strand, within AO353_20870 at 4567.121 kb on + strand, within AO353_20870 at 4567.121 kb on + strand, within AO353_20870 at 4567.121 kb on + strand, within AO353_20870 at 4567.121 kb on + strand, within AO353_20870 at 4567.121 kb on + strand, within AO353_20870 at 4567.122 kb on - strand, within AO353_20870 at 4567.122 kb on - strand, within AO353_20870 at 4567.122 kb on - strand, within AO353_20870 at 4567.123 kb on + strand, within AO353_20870 at 4567.123 kb on + strand, within AO353_20870 at 4567.123 kb on + strand, within AO353_20870 at 4567.123 kb on + strand, within AO353_20870 at 4567.124 kb on - strand, within AO353_20870 at 4567.124 kb on - strand, within AO353_20870 at 4567.124 kb on - strand, within AO353_20870 at 4567.124 kb on - strand, within AO353_20870 at 4567.124 kb on - strand, within AO353_20870 at 4567.124 kb on - strand, within AO353_20870 at 4567.124 kb on - strand, within AO353_20870 at 4567.124 kb on - strand, within AO353_20870 at 4567.212 kb on - strand at 4567.220 kb on + strand at 4567.220 kb on + strand at 4567.220 kb on + strand at 4567.220 kb on + strand at 4567.220 kb on + strand at 4567.221 kb on - strand at 4567.221 kb on - strand at 4567.221 kb on - strand at 4567.265 kb on + strand at 4567.265 kb on + strand at 4567.266 kb on - strand at 4567.266 kb on - strand at 4567.281 kb on + strand at 4567.281 kb on + strand at 4567.282 kb on - strand at 4567.282 kb on - strand at 4567.282 kb on - strand at 4567.282 kb on - strand at 4567.303 kb on - strand at 4567.501 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Aspartic Acid (C) remove 4,565,469 - +0.8 4,565,501 + -1.1 4,565,501 + -0.1 4,565,501 + -0.1 4,565,501 + -1.9 4,565,502 - +0.3 4,565,502 - -1.7 4,565,502 - -1.1 4,565,502 - -0.4 4,565,502 - -1.6 4,565,502 - -2.2 4,565,519 + +0.2 4,565,520 - -0.6 4,565,539 + -0.0 4,565,540 - +2.0 4,565,577 - +0.6 4,565,597 - AO353_20855 0.12 -1.9 4,565,597 - AO353_20855 0.12 -1.0 4,565,597 - AO353_20855 0.12 +0.3 4,565,636 + AO353_20855 0.25 -1.0 4,565,757 + AO353_20855 0.65 -1.6 4,565,758 - AO353_20855 0.65 -0.7 4,565,761 + AO353_20855 0.66 +0.9 4,565,761 + AO353_20855 0.66 -0.2 4,565,761 + AO353_20855 0.66 -2.6 4,565,761 + AO353_20855 0.66 -0.7 4,565,761 + AO353_20855 0.66 +1.8 4,565,761 + AO353_20855 0.66 -0.2 4,565,761 + AO353_20855 0.66 -0.6 4,565,761 + AO353_20855 0.66 +0.2 4,565,761 + AO353_20855 0.66 +0.8 4,565,761 + AO353_20855 0.66 +1.8 4,565,761 + AO353_20855 0.66 -0.2 4,565,761 + AO353_20855 0.66 -0.6 4,565,761 + AO353_20855 0.66 +0.8 4,565,761 + AO353_20855 0.66 +0.3 4,565,761 + AO353_20855 0.66 -0.4 4,565,762 - AO353_20855 0.66 -1.2 4,565,762 - AO353_20855 0.66 +0.4 4,565,762 - AO353_20855 0.66 -2.2 4,565,762 - AO353_20855 0.66 +0.3 4,565,762 - AO353_20855 0.66 +0.7 4,565,762 - AO353_20855 0.66 -1.1 4,565,762 - AO353_20855 0.66 -1.1 4,565,762 - AO353_20855 0.66 -0.8 4,565,762 - AO353_20855 0.66 -0.8 4,565,762 - AO353_20855 0.66 +0.8 4,565,762 - AO353_20855 0.66 -1.2 4,565,762 - AO353_20855 0.66 -0.5 4,565,762 - AO353_20855 0.66 +1.3 4,565,762 - AO353_20855 0.66 +1.2 4,565,762 - AO353_20855 0.66 -0.5 4,565,762 - AO353_20855 0.66 -1.2 4,565,762 - AO353_20855 0.66 -0.7 4,565,762 - AO353_20855 0.66 -0.8 4,565,803 + AO353_20855 0.80 -1.6 4,565,803 + AO353_20855 0.80 +0.7 4,565,804 - AO353_20855 0.80 -1.4 4,565,804 - AO353_20855 0.80 -2.2 4,565,847 + +1.3 4,565,847 + +0.9 4,565,847 + +0.2 4,565,847 + +1.1 4,565,847 + +0.0 4,565,847 + -1.6 4,565,847 + -1.1 4,565,848 - -0.6 4,565,848 - +1.5 4,565,848 - -0.7 4,565,848 - -0.8 4,565,848 - -0.4 4,565,855 + -0.7 4,565,855 + -1.9 4,565,855 + +0.4 4,565,859 + -0.1 4,565,859 + +0.3 4,565,859 + -0.9 4,565,859 + +0.4 4,565,859 + +0.9 4,565,859 + -0.4 4,565,860 - +0.8 4,565,860 - -1.8 4,565,860 - -1.1 4,565,860 - -0.2 4,565,860 - -2.5 4,565,875 - -1.1 4,565,875 - -1.3 4,565,875 - -1.1 4,565,909 + +0.3 4,565,909 + +0.5 4,565,909 + +2.5 4,565,909 + +0.4 4,565,910 - -0.2 4,566,010 + -0.3 4,566,010 + -0.6 4,566,011 - -0.2 4,566,054 + -0.4 4,566,093 + AO353_20860 0.21 +0.2 4,566,093 + AO353_20860 0.21 -0.5 4,566,094 - AO353_20860 0.21 +0.2 4,566,122 + AO353_20860 0.30 +0.3 4,566,274 + AO353_20860 0.78 -0.2 4,566,275 - AO353_20860 0.78 -0.1 4,566,400 + -1.0 4,566,401 - -0.8 4,566,416 + -0.2 4,566,417 - -0.3 4,566,532 + AO353_20865 0.55 -0.8 4,566,532 + AO353_20865 0.55 +0.2 4,566,532 + AO353_20865 0.55 +1.2 4,566,533 - AO353_20865 0.55 +0.7 4,566,600 + AO353_20865 0.87 +1.7 4,566,600 + AO353_20865 0.87 -0.6 4,566,600 + AO353_20865 0.87 -0.6 4,566,621 + -2.5 4,566,622 - +0.4 4,566,632 + +0.2 4,566,632 + -1.1 4,566,632 + -0.6 4,566,632 + +0.9 4,566,633 - -0.3 4,566,647 + -1.3 4,566,647 + +0.2 4,566,647 + -0.6 4,566,648 - -0.3 4,566,649 + +0.4 4,566,649 + +0.7 4,566,649 + +0.2 4,566,650 - -1.7 4,566,650 - -0.6 4,566,650 - +0.2 4,566,650 - -0.5 4,566,650 - +0.4 4,566,650 - +0.3 4,566,696 + +0.5 4,566,696 + -0.2 4,566,696 + -0.8 4,566,697 - +1.0 4,566,697 - +0.1 4,566,701 + -0.6 4,566,702 - -1.2 4,566,702 - -0.4 4,566,773 + +0.2 4,566,773 + -0.3 4,566,773 + +0.3 4,566,773 + -0.8 4,566,773 + +2.3 4,566,773 + +2.0 4,566,774 - -0.0 4,566,774 - +0.7 4,566,774 - -1.0 4,566,774 - -1.3 4,566,774 - -0.7 4,566,774 - +1.5 4,566,776 - -0.1 4,566,815 - +1.2 4,566,849 - -0.4 4,566,849 - -2.2 4,566,849 - -1.1 4,566,877 + +0.2 4,566,923 - +0.5 4,566,923 - -0.8 4,567,025 + AO353_20870 0.35 -0.8 4,567,025 + AO353_20870 0.35 +0.2 4,567,025 + AO353_20870 0.35 -2.2 4,567,025 + AO353_20870 0.35 -0.0 4,567,026 - AO353_20870 0.35 -1.2 4,567,026 - AO353_20870 0.35 +0.3 4,567,026 - AO353_20870 0.35 +1.8 4,567,121 + AO353_20870 0.67 +1.8 4,567,121 + AO353_20870 0.67 +1.2 4,567,121 + AO353_20870 0.67 +1.4 4,567,121 + AO353_20870 0.67 -1.7 4,567,121 + AO353_20870 0.67 +0.8 4,567,122 - AO353_20870 0.67 -0.4 4,567,122 - AO353_20870 0.67 -0.8 4,567,122 - AO353_20870 0.67 -0.9 4,567,123 + AO353_20870 0.67 -0.2 4,567,123 + AO353_20870 0.67 -0.1 4,567,123 + AO353_20870 0.67 +0.8 4,567,123 + AO353_20870 0.67 +0.9 4,567,124 - AO353_20870 0.68 -0.4 4,567,124 - AO353_20870 0.68 -1.1 4,567,124 - AO353_20870 0.68 +1.4 4,567,124 - AO353_20870 0.68 +0.5 4,567,124 - AO353_20870 0.68 -1.6 4,567,124 - AO353_20870 0.68 -0.9 4,567,124 - AO353_20870 0.68 -0.2 4,567,124 - AO353_20870 0.68 -1.2 4,567,212 - +0.8 4,567,220 + -0.4 4,567,220 + +1.8 4,567,220 + -1.1 4,567,220 + +0.4 4,567,220 + -0.5 4,567,221 - -0.8 4,567,221 - -1.2 4,567,221 - +0.8 4,567,265 + -0.4 4,567,265 + -0.4 4,567,266 - -0.6 4,567,266 - +1.2 4,567,281 + +0.1 4,567,281 + +0.2 4,567,282 - +0.1 4,567,282 - +0.3 4,567,282 - -0.8 4,567,282 - -1.2 4,567,303 - +0.0 4,567,501 + -0.1
Or see this region's nucleotide sequence