Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_20265

Experiment: L-Aspartic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_20260 and AO353_20265 are separated by 326 nucleotidesAO353_20265 and AO353_20270 are separated by 106 nucleotidesAO353_20270 and AO353_20275 are separated by 20 nucleotides AO353_20260: AO353_20260 - protein kinase, at 4,454,541 to 4,455,866 _20260 AO353_20265: AO353_20265 - spore coat protein, at 4,456,193 to 4,456,693 _20265 AO353_20270: AO353_20270 - spore coat protein, at 4,456,800 to 4,457,336 _20270 AO353_20275: AO353_20275 - spore coat protein, at 4,457,357 to 4,457,899 _20275 Position (kb) 4456 4457Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4455.329 kb on - strand, within AO353_20260at 4455.860 kb on + strandat 4455.860 kb on + strandat 4455.860 kb on + strandat 4455.982 kb on + strandat 4455.983 kb on - strandat 4455.983 kb on - strandat 4456.017 kb on - strandat 4456.023 kb on + strandat 4456.023 kb on + strandat 4456.023 kb on + strandat 4456.023 kb on + strandat 4456.023 kb on + strandat 4456.024 kb on - strandat 4456.024 kb on - strandat 4456.024 kb on - strandat 4456.036 kb on + strandat 4456.079 kb on + strandat 4456.098 kb on + strandat 4456.099 kb on - strandat 4456.116 kb on + strandat 4456.117 kb on - strandat 4456.117 kb on - strandat 4456.120 kb on + strandat 4456.120 kb on + strandat 4456.120 kb on + strandat 4456.120 kb on + strandat 4456.120 kb on + strandat 4456.120 kb on + strandat 4456.120 kb on + strandat 4456.120 kb on + strandat 4456.120 kb on + strandat 4456.121 kb on - strandat 4456.121 kb on - strandat 4456.121 kb on - strandat 4456.121 kb on - strandat 4456.121 kb on - strandat 4456.121 kb on - strandat 4456.121 kb on - strandat 4456.121 kb on - strandat 4456.121 kb on - strandat 4456.121 kb on - strandat 4456.121 kb on - strandat 4456.121 kb on - strandat 4456.121 kb on - strandat 4456.121 kb on - strandat 4456.135 kb on + strandat 4456.135 kb on + strandat 4456.135 kb on + strandat 4456.135 kb on + strandat 4456.135 kb on + strandat 4456.135 kb on + strandat 4456.135 kb on + strandat 4456.135 kb on + strandat 4456.136 kb on - strandat 4456.136 kb on - strandat 4456.188 kb on + strandat 4456.189 kb on - strandat 4456.189 kb on - strandat 4456.189 kb on - strandat 4456.189 kb on - strandat 4456.189 kb on - strandat 4456.189 kb on - strandat 4456.189 kb on - strandat 4456.189 kb on - strandat 4456.431 kb on + strand, within AO353_20265at 4456.431 kb on + strand, within AO353_20265at 4456.431 kb on + strand, within AO353_20265at 4456.431 kb on + strand, within AO353_20265at 4456.613 kb on + strand, within AO353_20265at 4456.614 kb on - strand, within AO353_20265at 4456.614 kb on - strand, within AO353_20265at 4456.614 kb on - strand, within AO353_20265at 4456.787 kb on + strandat 4456.787 kb on + strandat 4456.788 kb on - strandat 4456.788 kb on - strandat 4456.788 kb on - strandat 4456.788 kb on - strandat 4456.788 kb on - strandat 4456.805 kb on + strandat 4456.805 kb on + strandat 4456.805 kb on + strandat 4456.806 kb on - strandat 4456.806 kb on - strandat 4457.082 kb on - strand, within AO353_20270at 4457.193 kb on + strand, within AO353_20270at 4457.193 kb on + strand, within AO353_20270at 4457.193 kb on + strand, within AO353_20270at 4457.193 kb on + strand, within AO353_20270at 4457.193 kb on + strand, within AO353_20270at 4457.193 kb on + strand, within AO353_20270at 4457.193 kb on + strand, within AO353_20270at 4457.194 kb on - strand, within AO353_20270at 4457.194 kb on - strand, within AO353_20270at 4457.194 kb on - strand, within AO353_20270at 4457.301 kb on + strandat 4457.301 kb on + strandat 4457.301 kb on + strandat 4457.302 kb on - strandat 4457.320 kb on + strandat 4457.321 kb on - strandat 4457.321 kb on - strandat 4457.334 kb on + strandat 4457.368 kb on + strandat 4457.368 kb on + strandat 4457.368 kb on + strandat 4457.368 kb on + strandat 4457.368 kb on + strandat 4457.368 kb on + strandat 4457.368 kb on + strandat 4457.368 kb on + strandat 4457.368 kb on + strandat 4457.368 kb on + strandat 4457.368 kb on + strandat 4457.368 kb on + strandat 4457.368 kb on + strandat 4457.368 kb on + strandat 4457.368 kb on + strandat 4457.368 kb on + strandat 4457.368 kb on + strandat 4457.368 kb on + strandat 4457.368 kb on + strandat 4457.368 kb on + strandat 4457.368 kb on + strandat 4457.369 kb on - strandat 4457.369 kb on - strandat 4457.369 kb on - strandat 4457.369 kb on - strandat 4457.369 kb on - strandat 4457.369 kb on - strandat 4457.369 kb on - strandat 4457.369 kb on - strandat 4457.369 kb on - strandat 4457.369 kb on - strandat 4457.369 kb on - strandat 4457.369 kb on - strandat 4457.369 kb on - strandat 4457.369 kb on - strandat 4457.369 kb on - strandat 4457.369 kb on - strandat 4457.369 kb on - strandat 4457.369 kb on - strandat 4457.369 kb on - strandat 4457.369 kb on - strandat 4457.369 kb on - strandat 4457.369 kb on - strandat 4457.369 kb on - strandat 4457.370 kb on + strandat 4457.371 kb on - strandat 4457.371 kb on - strandat 4457.561 kb on - strand, within AO353_20275at 4457.561 kb on - strand, within AO353_20275at 4457.561 kb on - strand, within AO353_20275at 4457.580 kb on + strand, within AO353_20275at 4457.580 kb on + strand, within AO353_20275at 4457.580 kb on + strand, within AO353_20275at 4457.613 kb on + strand, within AO353_20275at 4457.613 kb on + strand, within AO353_20275at 4457.613 kb on + strand, within AO353_20275at 4457.613 kb on + strand, within AO353_20275at 4457.613 kb on + strand, within AO353_20275at 4457.613 kb on + strand, within AO353_20275at 4457.614 kb on - strand, within AO353_20275at 4457.614 kb on - strand, within AO353_20275at 4457.614 kb on - strand, within AO353_20275at 4457.614 kb on - strand, within AO353_20275at 4457.614 kb on - strand, within AO353_20275at 4457.614 kb on - strand, within AO353_20275at 4457.614 kb on - strand, within AO353_20275

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
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4,455,329 - AO353_20260 0.59 +0.1
4,455,860 + -1.5
4,455,860 + +0.3
4,455,860 + -2.5
4,455,982 + +0.0
4,455,983 - -1.2
4,455,983 - -0.2
4,456,017 - -0.8
4,456,023 + +0.2
4,456,023 + +1.8
4,456,023 + -0.3
4,456,023 + +1.8
4,456,023 + +0.6
4,456,024 - -0.7
4,456,024 - -0.2
4,456,024 - -1.5
4,456,036 + +1.2
4,456,079 + +0.2
4,456,098 + +0.5
4,456,099 - -0.8
4,456,116 + -0.4
4,456,117 - +0.1
4,456,117 - -0.0
4,456,120 + -1.0
4,456,120 + -0.2
4,456,120 + +1.1
4,456,120 + -0.7
4,456,120 + -0.5
4,456,120 + -1.7
4,456,120 + +0.8
4,456,120 + -0.5
4,456,120 + +0.3
4,456,121 - -0.2
4,456,121 - -0.2
4,456,121 - -0.2
4,456,121 - -1.0
4,456,121 - +0.0
4,456,121 - +0.6
4,456,121 - -1.9
4,456,121 - -0.3
4,456,121 - -0.6
4,456,121 - -2.3
4,456,121 - -0.0
4,456,121 - +0.1
4,456,121 - -0.3
4,456,121 - +0.2
4,456,135 + -0.2
4,456,135 + +1.0
4,456,135 + -0.5
4,456,135 + +0.7
4,456,135 + +0.2
4,456,135 + -1.0
4,456,135 + -1.0
4,456,135 + +1.2
4,456,136 - +0.8
4,456,136 - -1.5
4,456,188 + -1.0
4,456,189 - -0.8
4,456,189 - +0.2
4,456,189 - +0.6
4,456,189 - -0.6
4,456,189 - -0.7
4,456,189 - +1.2
4,456,189 - -0.1
4,456,189 - +0.8
4,456,431 + AO353_20265 0.48 -0.1
4,456,431 + AO353_20265 0.48 -1.4
4,456,431 + AO353_20265 0.48 +2.8
4,456,431 + AO353_20265 0.48 -0.8
4,456,613 + AO353_20265 0.84 -1.4
4,456,614 - AO353_20265 0.84 -0.5
4,456,614 - AO353_20265 0.84 +0.4
4,456,614 - AO353_20265 0.84 -2.0
4,456,787 + +1.2
4,456,787 + -2.4
4,456,788 - -0.8
4,456,788 - +0.8
4,456,788 - +1.2
4,456,788 - -1.0
4,456,788 - +0.3
4,456,805 + +0.0
4,456,805 + +0.8
4,456,805 + +0.6
4,456,806 - -1.4
4,456,806 - -0.4
4,457,082 - AO353_20270 0.53 +1.1
4,457,193 + AO353_20270 0.73 +2.1
4,457,193 + AO353_20270 0.73 -0.5
4,457,193 + AO353_20270 0.73 +0.1
4,457,193 + AO353_20270 0.73 +0.5
4,457,193 + AO353_20270 0.73 +1.4
4,457,193 + AO353_20270 0.73 -0.2
4,457,193 + AO353_20270 0.73 +0.8
4,457,194 - AO353_20270 0.73 +0.9
4,457,194 - AO353_20270 0.73 +0.1
4,457,194 - AO353_20270 0.73 +1.4
4,457,301 + -1.8
4,457,301 + +0.3
4,457,301 + +1.1
4,457,302 - +0.9
4,457,320 + -0.5
4,457,321 - -0.4
4,457,321 - -0.2
4,457,334 + +0.8
4,457,368 + +0.8
4,457,368 + -1.8
4,457,368 + -1.0
4,457,368 + +0.3
4,457,368 + +0.2
4,457,368 + +1.4
4,457,368 + +0.4
4,457,368 + -0.8
4,457,368 + -0.5
4,457,368 + -0.7
4,457,368 + -0.0
4,457,368 + -0.7
4,457,368 + +0.2
4,457,368 + -1.2
4,457,368 + -0.5
4,457,368 + -1.8
4,457,368 + +0.1
4,457,368 + +2.8
4,457,368 + -0.8
4,457,368 + -0.2
4,457,368 + +0.2
4,457,369 - -0.2
4,457,369 - +2.8
4,457,369 - -2.1
4,457,369 - +0.2
4,457,369 - -0.7
4,457,369 - +0.6
4,457,369 - +0.2
4,457,369 - -0.5
4,457,369 - -0.5
4,457,369 - -1.1
4,457,369 - -2.2
4,457,369 - -1.0
4,457,369 - +1.2
4,457,369 - -0.8
4,457,369 - +0.3
4,457,369 - -1.1
4,457,369 - -0.1
4,457,369 - +2.8
4,457,369 - -0.8
4,457,369 - -0.3
4,457,369 - +0.8
4,457,369 - +1.3
4,457,369 - -0.5
4,457,370 + +0.4
4,457,371 - +1.8
4,457,371 - +1.4
4,457,561 - AO353_20275 0.38 -0.5
4,457,561 - AO353_20275 0.38 +0.2
4,457,561 - AO353_20275 0.38 +1.1
4,457,580 + AO353_20275 0.41 -0.1
4,457,580 + AO353_20275 0.41 -1.3
4,457,580 + AO353_20275 0.41 +0.4
4,457,613 + AO353_20275 0.47 -0.0
4,457,613 + AO353_20275 0.47 +0.1
4,457,613 + AO353_20275 0.47 -0.1
4,457,613 + AO353_20275 0.47 -1.3
4,457,613 + AO353_20275 0.47 +0.7
4,457,613 + AO353_20275 0.47 +0.5
4,457,614 - AO353_20275 0.47 -1.0
4,457,614 - AO353_20275 0.47 -1.0
4,457,614 - AO353_20275 0.47 -0.8
4,457,614 - AO353_20275 0.47 -2.0
4,457,614 - AO353_20275 0.47 -0.3
4,457,614 - AO353_20275 0.47 -0.4
4,457,614 - AO353_20275 0.47 -0.5

Or see this region's nucleotide sequence