Experiment: L-Aspartic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_19755 and AO353_19760 are separated by 97 nucleotides AO353_19760 and AO353_19765 are separated by 94 nucleotides
AO353_19755: AO353_19755 - cytosine deaminase, at 4,343,132 to 4,344,370
_19755
AO353_19760: AO353_19760 - 6-carboxy-5,6,7,8-tetrahydropterin synthase, at 4,344,468 to 4,344,824
_19760
AO353_19765: AO353_19765 - hypothetical protein, at 4,344,919 to 4,345,998
_19765
Position (kb)
4344
4345 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4343.616 kb on + strand, within AO353_19755 at 4343.616 kb on + strand, within AO353_19755 at 4343.617 kb on - strand, within AO353_19755 at 4343.629 kb on - strand, within AO353_19755 at 4343.629 kb on - strand, within AO353_19755 at 4343.823 kb on + strand, within AO353_19755 at 4343.823 kb on + strand, within AO353_19755 at 4343.823 kb on + strand, within AO353_19755 at 4344.420 kb on + strand at 4344.421 kb on - strand at 4344.421 kb on - strand at 4344.421 kb on - strand at 4344.421 kb on - strand at 4344.426 kb on + strand at 4344.426 kb on + strand at 4344.426 kb on + strand at 4344.469 kb on + strand at 4344.470 kb on - strand at 4344.470 kb on - strand at 4344.481 kb on + strand at 4344.481 kb on + strand at 4344.481 kb on + strand at 4344.481 kb on + strand at 4344.481 kb on + strand at 4344.482 kb on - strand at 4344.482 kb on - strand at 4344.616 kb on + strand, within AO353_19760 at 4344.616 kb on + strand, within AO353_19760 at 4344.616 kb on + strand, within AO353_19760 at 4344.616 kb on + strand, within AO353_19760 at 4344.616 kb on + strand, within AO353_19760 at 4344.617 kb on - strand, within AO353_19760 at 4344.617 kb on - strand, within AO353_19760 at 4344.617 kb on - strand, within AO353_19760 at 4344.803 kb on + strand at 4344.803 kb on + strand at 4344.883 kb on + strand at 4344.920 kb on + strand at 4344.920 kb on + strand at 4344.920 kb on + strand at 4344.921 kb on - strand at 4344.921 kb on - strand at 4345.016 kb on + strand at 4345.017 kb on - strand at 4345.072 kb on + strand, within AO353_19765 at 4345.101 kb on - strand, within AO353_19765 at 4345.101 kb on - strand, within AO353_19765 at 4345.238 kb on + strand, within AO353_19765 at 4345.238 kb on + strand, within AO353_19765 at 4345.256 kb on + strand, within AO353_19765 at 4345.256 kb on + strand, within AO353_19765 at 4345.257 kb on - strand, within AO353_19765 at 4345.257 kb on - strand, within AO353_19765 at 4345.281 kb on - strand, within AO353_19765 at 4345.281 kb on - strand, within AO353_19765 at 4345.312 kb on + strand, within AO353_19765 at 4345.312 kb on + strand, within AO353_19765 at 4345.312 kb on + strand, within AO353_19765 at 4345.312 kb on + strand, within AO353_19765 at 4345.312 kb on + strand, within AO353_19765 at 4345.312 kb on + strand, within AO353_19765 at 4345.313 kb on - strand, within AO353_19765 at 4345.313 kb on - strand, within AO353_19765 at 4345.313 kb on - strand, within AO353_19765 at 4345.313 kb on - strand, within AO353_19765 at 4345.313 kb on - strand, within AO353_19765 at 4345.313 kb on - strand, within AO353_19765 at 4345.706 kb on + strand, within AO353_19765 at 4345.706 kb on + strand, within AO353_19765 at 4345.706 kb on + strand, within AO353_19765 at 4345.706 kb on + strand, within AO353_19765 at 4345.706 kb on + strand, within AO353_19765 at 4345.706 kb on + strand, within AO353_19765 at 4345.707 kb on - strand, within AO353_19765
Per-strain Table
Position Strand Gene LocusTag Fraction L-Aspartic Acid (C) remove 4,343,616 + AO353_19755 0.39 +1.3 4,343,616 + AO353_19755 0.39 -1.4 4,343,617 - AO353_19755 0.39 -1.6 4,343,629 - AO353_19755 0.40 -0.2 4,343,629 - AO353_19755 0.40 -0.2 4,343,823 + AO353_19755 0.56 -1.6 4,343,823 + AO353_19755 0.56 -1.2 4,343,823 + AO353_19755 0.56 +1.0 4,344,420 + +0.1 4,344,421 - -0.2 4,344,421 - -1.0 4,344,421 - -1.3 4,344,421 - +1.4 4,344,426 + -1.0 4,344,426 + -0.4 4,344,426 + +0.8 4,344,469 + -0.5 4,344,470 - +0.4 4,344,470 - -1.0 4,344,481 + +0.0 4,344,481 + -0.0 4,344,481 + +0.3 4,344,481 + -0.6 4,344,481 + -1.7 4,344,482 - -1.6 4,344,482 - +0.7 4,344,616 + AO353_19760 0.41 +0.6 4,344,616 + AO353_19760 0.41 +0.8 4,344,616 + AO353_19760 0.41 +2.3 4,344,616 + AO353_19760 0.41 +1.3 4,344,616 + AO353_19760 0.41 -0.5 4,344,617 - AO353_19760 0.42 +1.6 4,344,617 - AO353_19760 0.42 +1.8 4,344,617 - AO353_19760 0.42 -2.3 4,344,803 + -0.0 4,344,803 + +0.8 4,344,883 + -0.4 4,344,920 + -0.4 4,344,920 + +0.5 4,344,920 + -0.2 4,344,921 - -1.0 4,344,921 - +0.0 4,345,016 + -0.6 4,345,017 - -1.0 4,345,072 + AO353_19765 0.14 +0.7 4,345,101 - AO353_19765 0.17 +0.6 4,345,101 - AO353_19765 0.17 +0.8 4,345,238 + AO353_19765 0.30 +0.0 4,345,238 + AO353_19765 0.30 -0.8 4,345,256 + AO353_19765 0.31 -0.0 4,345,256 + AO353_19765 0.31 -1.2 4,345,257 - AO353_19765 0.31 +1.2 4,345,257 - AO353_19765 0.31 +0.2 4,345,281 - AO353_19765 0.34 +0.6 4,345,281 - AO353_19765 0.34 +0.8 4,345,312 + AO353_19765 0.36 +0.2 4,345,312 + AO353_19765 0.36 -1.6 4,345,312 + AO353_19765 0.36 -0.4 4,345,312 + AO353_19765 0.36 +0.8 4,345,312 + AO353_19765 0.36 -1.6 4,345,312 + AO353_19765 0.36 -1.0 4,345,313 - AO353_19765 0.36 +1.0 4,345,313 - AO353_19765 0.36 +1.6 4,345,313 - AO353_19765 0.36 -0.8 4,345,313 - AO353_19765 0.36 +0.2 4,345,313 - AO353_19765 0.36 -1.2 4,345,313 - AO353_19765 0.36 +1.2 4,345,706 + AO353_19765 0.73 -1.0 4,345,706 + AO353_19765 0.73 +1.6 4,345,706 + AO353_19765 0.73 -0.8 4,345,706 + AO353_19765 0.73 +1.2 4,345,706 + AO353_19765 0.73 -0.5 4,345,706 + AO353_19765 0.73 +1.0 4,345,707 - AO353_19765 0.73 +1.6
Or see this region's nucleotide sequence