Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_19760

Experiment: L-Aspartic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_19755 and AO353_19760 are separated by 97 nucleotidesAO353_19760 and AO353_19765 are separated by 94 nucleotides AO353_19755: AO353_19755 - cytosine deaminase, at 4,343,132 to 4,344,370 _19755 AO353_19760: AO353_19760 - 6-carboxy-5,6,7,8-tetrahydropterin synthase, at 4,344,468 to 4,344,824 _19760 AO353_19765: AO353_19765 - hypothetical protein, at 4,344,919 to 4,345,998 _19765 Position (kb) 4344 4345Strain fitness (log2 ratio) -2 -1 0 1 2at 4343.616 kb on + strand, within AO353_19755at 4343.616 kb on + strand, within AO353_19755at 4343.617 kb on - strand, within AO353_19755at 4343.629 kb on - strand, within AO353_19755at 4343.629 kb on - strand, within AO353_19755at 4343.823 kb on + strand, within AO353_19755at 4343.823 kb on + strand, within AO353_19755at 4343.823 kb on + strand, within AO353_19755at 4344.420 kb on + strandat 4344.421 kb on - strandat 4344.421 kb on - strandat 4344.421 kb on - strandat 4344.421 kb on - strandat 4344.426 kb on + strandat 4344.426 kb on + strandat 4344.426 kb on + strandat 4344.469 kb on + strandat 4344.470 kb on - strandat 4344.470 kb on - strandat 4344.481 kb on + strandat 4344.481 kb on + strandat 4344.481 kb on + strandat 4344.481 kb on + strandat 4344.481 kb on + strandat 4344.482 kb on - strandat 4344.482 kb on - strandat 4344.616 kb on + strand, within AO353_19760at 4344.616 kb on + strand, within AO353_19760at 4344.616 kb on + strand, within AO353_19760at 4344.616 kb on + strand, within AO353_19760at 4344.616 kb on + strand, within AO353_19760at 4344.617 kb on - strand, within AO353_19760at 4344.617 kb on - strand, within AO353_19760at 4344.617 kb on - strand, within AO353_19760at 4344.803 kb on + strandat 4344.803 kb on + strandat 4344.883 kb on + strandat 4344.920 kb on + strandat 4344.920 kb on + strandat 4344.920 kb on + strandat 4344.921 kb on - strandat 4344.921 kb on - strandat 4345.016 kb on + strandat 4345.017 kb on - strandat 4345.072 kb on + strand, within AO353_19765at 4345.101 kb on - strand, within AO353_19765at 4345.101 kb on - strand, within AO353_19765at 4345.238 kb on + strand, within AO353_19765at 4345.238 kb on + strand, within AO353_19765at 4345.256 kb on + strand, within AO353_19765at 4345.256 kb on + strand, within AO353_19765at 4345.257 kb on - strand, within AO353_19765at 4345.257 kb on - strand, within AO353_19765at 4345.281 kb on - strand, within AO353_19765at 4345.281 kb on - strand, within AO353_19765at 4345.312 kb on + strand, within AO353_19765at 4345.312 kb on + strand, within AO353_19765at 4345.312 kb on + strand, within AO353_19765at 4345.312 kb on + strand, within AO353_19765at 4345.312 kb on + strand, within AO353_19765at 4345.312 kb on + strand, within AO353_19765at 4345.313 kb on - strand, within AO353_19765at 4345.313 kb on - strand, within AO353_19765at 4345.313 kb on - strand, within AO353_19765at 4345.313 kb on - strand, within AO353_19765at 4345.313 kb on - strand, within AO353_19765at 4345.313 kb on - strand, within AO353_19765at 4345.706 kb on + strand, within AO353_19765at 4345.706 kb on + strand, within AO353_19765at 4345.706 kb on + strand, within AO353_19765at 4345.706 kb on + strand, within AO353_19765at 4345.706 kb on + strand, within AO353_19765at 4345.706 kb on + strand, within AO353_19765at 4345.707 kb on - strand, within AO353_19765

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
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4,343,616 + AO353_19755 0.39 +1.3
4,343,616 + AO353_19755 0.39 -1.4
4,343,617 - AO353_19755 0.39 -1.6
4,343,629 - AO353_19755 0.40 -0.2
4,343,629 - AO353_19755 0.40 -0.2
4,343,823 + AO353_19755 0.56 -1.6
4,343,823 + AO353_19755 0.56 -1.2
4,343,823 + AO353_19755 0.56 +1.0
4,344,420 + +0.1
4,344,421 - -0.2
4,344,421 - -1.0
4,344,421 - -1.3
4,344,421 - +1.4
4,344,426 + -1.0
4,344,426 + -0.4
4,344,426 + +0.8
4,344,469 + -0.5
4,344,470 - +0.4
4,344,470 - -1.0
4,344,481 + +0.0
4,344,481 + -0.0
4,344,481 + +0.3
4,344,481 + -0.6
4,344,481 + -1.7
4,344,482 - -1.6
4,344,482 - +0.7
4,344,616 + AO353_19760 0.41 +0.6
4,344,616 + AO353_19760 0.41 +0.8
4,344,616 + AO353_19760 0.41 +2.3
4,344,616 + AO353_19760 0.41 +1.3
4,344,616 + AO353_19760 0.41 -0.5
4,344,617 - AO353_19760 0.42 +1.6
4,344,617 - AO353_19760 0.42 +1.8
4,344,617 - AO353_19760 0.42 -2.3
4,344,803 + -0.0
4,344,803 + +0.8
4,344,883 + -0.4
4,344,920 + -0.4
4,344,920 + +0.5
4,344,920 + -0.2
4,344,921 - -1.0
4,344,921 - +0.0
4,345,016 + -0.6
4,345,017 - -1.0
4,345,072 + AO353_19765 0.14 +0.7
4,345,101 - AO353_19765 0.17 +0.6
4,345,101 - AO353_19765 0.17 +0.8
4,345,238 + AO353_19765 0.30 +0.0
4,345,238 + AO353_19765 0.30 -0.8
4,345,256 + AO353_19765 0.31 -0.0
4,345,256 + AO353_19765 0.31 -1.2
4,345,257 - AO353_19765 0.31 +1.2
4,345,257 - AO353_19765 0.31 +0.2
4,345,281 - AO353_19765 0.34 +0.6
4,345,281 - AO353_19765 0.34 +0.8
4,345,312 + AO353_19765 0.36 +0.2
4,345,312 + AO353_19765 0.36 -1.6
4,345,312 + AO353_19765 0.36 -0.4
4,345,312 + AO353_19765 0.36 +0.8
4,345,312 + AO353_19765 0.36 -1.6
4,345,312 + AO353_19765 0.36 -1.0
4,345,313 - AO353_19765 0.36 +1.0
4,345,313 - AO353_19765 0.36 +1.6
4,345,313 - AO353_19765 0.36 -0.8
4,345,313 - AO353_19765 0.36 +0.2
4,345,313 - AO353_19765 0.36 -1.2
4,345,313 - AO353_19765 0.36 +1.2
4,345,706 + AO353_19765 0.73 -1.0
4,345,706 + AO353_19765 0.73 +1.6
4,345,706 + AO353_19765 0.73 -0.8
4,345,706 + AO353_19765 0.73 +1.2
4,345,706 + AO353_19765 0.73 -0.5
4,345,706 + AO353_19765 0.73 +1.0
4,345,707 - AO353_19765 0.73 +1.6

Or see this region's nucleotide sequence