Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_19360

Experiment: L-Aspartic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_19350 and AO353_19355 are separated by 75 nucleotidesAO353_19355 and AO353_19360 overlap by 25 nucleotidesAO353_19360 and AO353_19365 overlap by 1 nucleotides AO353_19350: AO353_19350 - 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase, at 4,241,035 to 4,241,847 _19350 AO353_19355: AO353_19355 - dihydroneopterin aldolase, at 4,241,923 to 4,242,690 _19355 AO353_19360: AO353_19360 - peroxiredoxin, at 4,242,666 to 4,243,532 _19360 AO353_19365: AO353_19365 - thiol:disulfide interchange protein, at 4,243,532 to 4,245,268 _19365 Position (kb) 4242 4243 4244Strain fitness (log2 ratio) -2 -1 0 1 2at 4241.752 kb on + strand, within AO353_19350at 4241.845 kb on + strandat 4241.845 kb on + strandat 4241.846 kb on - strandat 4241.846 kb on - strandat 4241.846 kb on - strandat 4241.902 kb on + strandat 4241.902 kb on + strandat 4241.903 kb on - strandat 4241.925 kb on - strandat 4241.948 kb on - strandat 4241.948 kb on - strandat 4242.005 kb on + strand, within AO353_19355at 4242.005 kb on + strand, within AO353_19355at 4242.005 kb on + strand, within AO353_19355at 4242.005 kb on + strand, within AO353_19355at 4242.005 kb on + strand, within AO353_19355at 4242.005 kb on + strand, within AO353_19355at 4242.005 kb on + strand, within AO353_19355at 4242.005 kb on + strand, within AO353_19355at 4242.005 kb on + strand, within AO353_19355at 4242.005 kb on + strand, within AO353_19355at 4242.005 kb on + strand, within AO353_19355at 4242.006 kb on - strand, within AO353_19355at 4242.006 kb on - strand, within AO353_19355at 4242.006 kb on - strand, within AO353_19355at 4242.006 kb on - strand, within AO353_19355at 4242.006 kb on - strand, within AO353_19355at 4242.006 kb on - strand, within AO353_19355at 4242.006 kb on - strand, within AO353_19355at 4242.006 kb on - strand, within AO353_19355at 4242.006 kb on - strand, within AO353_19355at 4242.054 kb on + strand, within AO353_19355at 4242.054 kb on + strand, within AO353_19355at 4242.055 kb on - strand, within AO353_19355at 4242.055 kb on - strand, within AO353_19355at 4242.055 kb on - strand, within AO353_19355at 4242.279 kb on + strand, within AO353_19355at 4242.279 kb on + strand, within AO353_19355at 4242.279 kb on + strand, within AO353_19355at 4242.279 kb on + strand, within AO353_19355at 4242.279 kb on + strand, within AO353_19355at 4242.279 kb on + strand, within AO353_19355at 4242.279 kb on + strand, within AO353_19355at 4242.280 kb on - strand, within AO353_19355at 4242.280 kb on - strand, within AO353_19355at 4242.280 kb on - strand, within AO353_19355at 4242.280 kb on - strand, within AO353_19355at 4242.280 kb on - strand, within AO353_19355at 4242.280 kb on - strand, within AO353_19355at 4242.280 kb on - strand, within AO353_19355at 4242.280 kb on - strand, within AO353_19355at 4242.280 kb on - strand, within AO353_19355at 4242.280 kb on - strand, within AO353_19355at 4242.280 kb on - strand, within AO353_19355at 4242.280 kb on - strand, within AO353_19355at 4242.280 kb on - strand, within AO353_19355at 4242.280 kb on - strand, within AO353_19355at 4242.280 kb on - strand, within AO353_19355at 4242.280 kb on - strand, within AO353_19355at 4242.314 kb on + strand, within AO353_19355at 4242.314 kb on + strand, within AO353_19355at 4242.315 kb on - strand, within AO353_19355at 4242.315 kb on - strand, within AO353_19355at 4242.315 kb on - strand, within AO353_19355at 4242.401 kb on + strand, within AO353_19355at 4242.401 kb on + strand, within AO353_19355at 4242.453 kb on - strand, within AO353_19355at 4242.494 kb on + strand, within AO353_19355at 4242.495 kb on - strand, within AO353_19355at 4242.495 kb on - strand, within AO353_19355at 4242.495 kb on - strand, within AO353_19355at 4242.518 kb on + strand, within AO353_19355at 4242.519 kb on - strand, within AO353_19355at 4242.817 kb on + strand, within AO353_19360at 4242.827 kb on + strand, within AO353_19360at 4243.334 kb on - strand, within AO353_19360at 4243.345 kb on + strand, within AO353_19360at 4243.346 kb on - strand, within AO353_19360at 4243.346 kb on - strand, within AO353_19360at 4243.748 kb on + strand, within AO353_19365at 4243.749 kb on - strand, within AO353_19365at 4243.810 kb on - strand, within AO353_19365at 4243.810 kb on - strand, within AO353_19365at 4243.810 kb on - strand, within AO353_19365at 4243.810 kb on - strand, within AO353_19365at 4243.810 kb on - strand, within AO353_19365at 4243.810 kb on - strand, within AO353_19365at 4243.813 kb on - strand, within AO353_19365at 4243.813 kb on - strand, within AO353_19365at 4243.813 kb on - strand, within AO353_19365at 4243.813 kb on - strand, within AO353_19365at 4243.813 kb on - strand, within AO353_19365at 4243.813 kb on - strand, within AO353_19365at 4243.813 kb on - strand, within AO353_19365at 4243.813 kb on - strand, within AO353_19365at 4243.945 kb on - strand, within AO353_19365at 4243.945 kb on - strand, within AO353_19365at 4243.945 kb on - strand, within AO353_19365at 4244.089 kb on - strand, within AO353_19365at 4244.118 kb on - strand, within AO353_19365at 4244.118 kb on - strand, within AO353_19365at 4244.341 kb on - strand, within AO353_19365

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
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4,241,752 + AO353_19350 0.88 -1.4
4,241,845 + -0.3
4,241,845 + -0.5
4,241,846 - -0.8
4,241,846 - -0.4
4,241,846 - +1.2
4,241,902 + +0.5
4,241,902 + +0.1
4,241,903 - +1.6
4,241,925 - -0.5
4,241,948 - -2.0
4,241,948 - -2.3
4,242,005 + AO353_19355 0.11 -0.6
4,242,005 + AO353_19355 0.11 +0.9
4,242,005 + AO353_19355 0.11 +0.1
4,242,005 + AO353_19355 0.11 +0.1
4,242,005 + AO353_19355 0.11 +0.3
4,242,005 + AO353_19355 0.11 -1.0
4,242,005 + AO353_19355 0.11 -0.4
4,242,005 + AO353_19355 0.11 -0.5
4,242,005 + AO353_19355 0.11 -0.4
4,242,005 + AO353_19355 0.11 -0.3
4,242,005 + AO353_19355 0.11 +0.4
4,242,006 - AO353_19355 0.11 -0.1
4,242,006 - AO353_19355 0.11 -0.4
4,242,006 - AO353_19355 0.11 +1.3
4,242,006 - AO353_19355 0.11 -1.5
4,242,006 - AO353_19355 0.11 +0.0
4,242,006 - AO353_19355 0.11 -0.5
4,242,006 - AO353_19355 0.11 -0.4
4,242,006 - AO353_19355 0.11 -0.5
4,242,006 - AO353_19355 0.11 +0.3
4,242,054 + AO353_19355 0.17 -1.3
4,242,054 + AO353_19355 0.17 -0.3
4,242,055 - AO353_19355 0.17 -0.5
4,242,055 - AO353_19355 0.17 +1.1
4,242,055 - AO353_19355 0.17 +0.3
4,242,279 + AO353_19355 0.46 -2.2
4,242,279 + AO353_19355 0.46 -1.1
4,242,279 + AO353_19355 0.46 -0.0
4,242,279 + AO353_19355 0.46 -1.7
4,242,279 + AO353_19355 0.46 -1.6
4,242,279 + AO353_19355 0.46 -1.0
4,242,279 + AO353_19355 0.46 -1.1
4,242,280 - AO353_19355 0.46 -0.3
4,242,280 - AO353_19355 0.46 +1.2
4,242,280 - AO353_19355 0.46 -1.7
4,242,280 - AO353_19355 0.46 -0.4
4,242,280 - AO353_19355 0.46 +0.5
4,242,280 - AO353_19355 0.46 +0.5
4,242,280 - AO353_19355 0.46 +0.3
4,242,280 - AO353_19355 0.46 -0.1
4,242,280 - AO353_19355 0.46 -0.6
4,242,280 - AO353_19355 0.46 -0.5
4,242,280 - AO353_19355 0.46 +0.3
4,242,280 - AO353_19355 0.46 +0.0
4,242,280 - AO353_19355 0.46 +2.4
4,242,280 - AO353_19355 0.46 -0.9
4,242,280 - AO353_19355 0.46 -1.1
4,242,280 - AO353_19355 0.46 -1.0
4,242,314 + AO353_19355 0.51 -1.5
4,242,314 + AO353_19355 0.51 +1.5
4,242,315 - AO353_19355 0.51 -1.0
4,242,315 - AO353_19355 0.51 +0.1
4,242,315 - AO353_19355 0.51 -1.3
4,242,401 + AO353_19355 0.62 +0.4
4,242,401 + AO353_19355 0.62 +0.9
4,242,453 - AO353_19355 0.69 -2.1
4,242,494 + AO353_19355 0.74 +0.7
4,242,495 - AO353_19355 0.74 +2.3
4,242,495 - AO353_19355 0.74 -2.1
4,242,495 - AO353_19355 0.74 +0.6
4,242,518 + AO353_19355 0.77 +0.1
4,242,519 - AO353_19355 0.78 -0.3
4,242,817 + AO353_19360 0.17 +0.0
4,242,827 + AO353_19360 0.19 -0.6
4,243,334 - AO353_19360 0.77 -0.2
4,243,345 + AO353_19360 0.78 -0.5
4,243,346 - AO353_19360 0.78 -1.8
4,243,346 - AO353_19360 0.78 -1.6
4,243,748 + AO353_19365 0.12 +1.0
4,243,749 - AO353_19365 0.12 +1.0
4,243,810 - AO353_19365 0.16 +0.3
4,243,810 - AO353_19365 0.16 -2.0
4,243,810 - AO353_19365 0.16 +1.5
4,243,810 - AO353_19365 0.16 +0.3
4,243,810 - AO353_19365 0.16 -1.7
4,243,810 - AO353_19365 0.16 -1.2
4,243,813 - AO353_19365 0.16 -0.1
4,243,813 - AO353_19365 0.16 +0.5
4,243,813 - AO353_19365 0.16 -0.6
4,243,813 - AO353_19365 0.16 -0.1
4,243,813 - AO353_19365 0.16 -0.0
4,243,813 - AO353_19365 0.16 +0.3
4,243,813 - AO353_19365 0.16 +0.8
4,243,813 - AO353_19365 0.16 -0.9
4,243,945 - AO353_19365 0.24 -1.3
4,243,945 - AO353_19365 0.24 +0.6
4,243,945 - AO353_19365 0.24 +1.8
4,244,089 - AO353_19365 0.32 +0.4
4,244,118 - AO353_19365 0.34 -0.3
4,244,118 - AO353_19365 0.34 -1.6
4,244,341 - AO353_19365 0.47 +2.4

Or see this region's nucleotide sequence