Experiment: L-Aspartic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_19275 and AO353_19280 are separated by 520 nucleotides AO353_19280 and AO353_19285 are separated by 566 nucleotides
AO353_19275: AO353_19275 - histidine kinase, at 4,224,739 to 4,225,632
_19275
AO353_19280: AO353_19280 - hypothetical protein, at 4,226,153 to 4,226,623
_19280
AO353_19285: AO353_19285 - chemotaxis protein CheW, at 4,227,190 to 4,228,125
_19285
Position (kb)
4226
4227 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 4225.385 kb on - strand, within AO353_19275 at 4225.523 kb on + strand, within AO353_19275 at 4225.523 kb on + strand, within AO353_19275 at 4225.523 kb on + strand, within AO353_19275 at 4225.524 kb on - strand, within AO353_19275 at 4225.628 kb on + strand at 4225.628 kb on + strand at 4225.628 kb on + strand at 4225.628 kb on + strand at 4225.628 kb on + strand at 4225.628 kb on + strand at 4225.628 kb on + strand at 4225.628 kb on + strand at 4225.629 kb on - strand at 4225.629 kb on - strand at 4225.629 kb on - strand at 4225.629 kb on - strand at 4225.629 kb on - strand at 4225.629 kb on - strand at 4225.629 kb on - strand at 4225.629 kb on - strand at 4225.629 kb on - strand at 4225.633 kb on - strand at 4225.633 kb on - strand at 4225.633 kb on - strand at 4225.633 kb on - strand at 4225.712 kb on - strand at 4225.712 kb on - strand at 4225.719 kb on + strand at 4225.719 kb on + strand at 4225.720 kb on - strand at 4225.720 kb on - strand at 4225.735 kb on - strand at 4225.771 kb on + strand at 4225.771 kb on + strand at 4225.771 kb on + strand at 4225.771 kb on + strand at 4225.772 kb on - strand at 4225.772 kb on - strand at 4225.772 kb on - strand at 4225.772 kb on - strand at 4225.772 kb on - strand at 4225.772 kb on - strand at 4225.823 kb on + strand at 4225.824 kb on - strand at 4225.824 kb on - strand at 4225.837 kb on - strand at 4225.840 kb on - strand at 4225.846 kb on + strand at 4225.846 kb on + strand at 4225.846 kb on + strand at 4225.846 kb on + strand at 4225.846 kb on + strand at 4225.846 kb on + strand at 4225.846 kb on + strand at 4225.846 kb on + strand at 4225.846 kb on + strand at 4225.846 kb on + strand at 4225.847 kb on - strand at 4225.847 kb on - strand at 4225.847 kb on - strand at 4225.847 kb on - strand at 4225.847 kb on - strand at 4225.847 kb on - strand at 4225.852 kb on - strand at 4225.870 kb on + strand at 4225.870 kb on + strand at 4225.871 kb on - strand at 4225.871 kb on - strand at 4225.872 kb on + strand at 4225.872 kb on + strand at 4225.872 kb on + strand at 4225.872 kb on + strand at 4225.872 kb on + strand at 4225.872 kb on + strand at 4225.872 kb on + strand at 4225.872 kb on + strand at 4225.872 kb on + strand at 4225.872 kb on + strand at 4225.872 kb on + strand at 4225.872 kb on + strand at 4225.872 kb on + strand at 4225.872 kb on + strand at 4225.872 kb on + strand at 4225.873 kb on - strand at 4225.873 kb on - strand at 4225.873 kb on - strand at 4225.873 kb on - strand at 4225.873 kb on - strand at 4225.873 kb on - strand at 4225.873 kb on - strand at 4225.873 kb on - strand at 4225.873 kb on - strand at 4225.873 kb on - strand at 4225.873 kb on - strand at 4225.873 kb on - strand at 4225.873 kb on - strand at 4225.873 kb on - strand at 4225.874 kb on + strand at 4225.874 kb on + strand at 4225.874 kb on + strand at 4225.874 kb on + strand at 4225.874 kb on + strand at 4225.874 kb on + strand at 4225.874 kb on + strand at 4225.874 kb on + strand at 4225.874 kb on + strand at 4225.874 kb on + strand at 4225.874 kb on + strand at 4225.874 kb on + strand at 4225.875 kb on - strand at 4225.875 kb on - strand at 4225.875 kb on - strand at 4225.875 kb on - strand at 4225.875 kb on - strand at 4225.875 kb on - strand at 4225.875 kb on - strand at 4225.875 kb on - strand at 4225.875 kb on - strand at 4225.912 kb on + strand at 4225.912 kb on + strand at 4225.912 kb on + strand at 4225.912 kb on + strand at 4225.912 kb on + strand at 4225.912 kb on + strand at 4225.912 kb on + strand at 4225.912 kb on + strand at 4225.912 kb on + strand at 4225.912 kb on + strand at 4225.912 kb on + strand at 4225.912 kb on + strand at 4225.912 kb on + strand at 4225.912 kb on + strand at 4225.912 kb on + strand at 4225.912 kb on + strand at 4225.912 kb on + strand at 4225.913 kb on - strand at 4225.913 kb on - strand at 4225.913 kb on - strand at 4225.913 kb on - strand at 4225.913 kb on - strand at 4225.913 kb on - strand at 4225.913 kb on - strand at 4225.913 kb on - strand at 4225.966 kb on + strand at 4225.966 kb on + strand at 4225.966 kb on + strand at 4225.967 kb on - strand at 4225.967 kb on - strand at 4225.974 kb on + strand at 4226.028 kb on + strand at 4226.029 kb on - strand at 4226.040 kb on + strand at 4226.043 kb on + strand at 4226.060 kb on + strand at 4226.067 kb on + strand at 4226.068 kb on - strand at 4226.075 kb on - strand at 4226.075 kb on - strand at 4226.113 kb on + strand at 4226.114 kb on - strand at 4226.140 kb on + strand at 4226.140 kb on + strand at 4226.258 kb on + strand, within AO353_19280 at 4226.258 kb on + strand, within AO353_19280 at 4226.258 kb on + strand, within AO353_19280 at 4226.258 kb on + strand, within AO353_19280 at 4226.259 kb on - strand, within AO353_19280 at 4226.608 kb on + strand at 4226.680 kb on + strand at 4226.680 kb on + strand at 4226.680 kb on + strand at 4226.681 kb on - strand at 4226.681 kb on - strand at 4226.685 kb on + strand at 4226.685 kb on + strand at 4226.685 kb on + strand at 4226.685 kb on + strand at 4226.685 kb on + strand at 4226.686 kb on - strand at 4226.686 kb on - strand at 4226.711 kb on + strand at 4226.834 kb on + strand at 4226.834 kb on + strand at 4226.834 kb on + strand at 4226.834 kb on + strand at 4226.834 kb on + strand at 4226.834 kb on + strand at 4226.834 kb on + strand at 4226.834 kb on + strand at 4226.835 kb on - strand at 4226.835 kb on - strand at 4226.878 kb on + strand at 4226.878 kb on + strand at 4226.878 kb on + strand at 4226.878 kb on + strand at 4226.935 kb on + strand at 4226.942 kb on + strand at 4226.959 kb on - strand at 4226.959 kb on - strand at 4227.055 kb on + strand at 4227.067 kb on + strand at 4227.212 kb on + strand at 4227.212 kb on + strand at 4227.212 kb on + strand at 4227.212 kb on + strand at 4227.212 kb on + strand at 4227.212 kb on + strand at 4227.212 kb on + strand at 4227.212 kb on + strand at 4227.213 kb on - strand at 4227.213 kb on - strand at 4227.213 kb on - strand at 4227.213 kb on - strand at 4227.213 kb on - strand at 4227.213 kb on - strand at 4227.213 kb on - strand at 4227.213 kb on - strand at 4227.213 kb on - strand at 4227.284 kb on + strand, within AO353_19285 at 4227.284 kb on + strand, within AO353_19285 at 4227.285 kb on - strand, within AO353_19285 at 4227.285 kb on - strand, within AO353_19285 at 4227.285 kb on - strand, within AO353_19285 at 4227.285 kb on - strand, within AO353_19285 at 4227.285 kb on - strand, within AO353_19285 at 4227.478 kb on + strand, within AO353_19285 at 4227.478 kb on + strand at 4227.479 kb on - strand, within AO353_19285 at 4227.479 kb on - strand, within AO353_19285 at 4227.479 kb on - strand, within AO353_19285 at 4227.479 kb on - strand, within AO353_19285 at 4227.546 kb on + strand, within AO353_19285 at 4227.546 kb on + strand, within AO353_19285 at 4227.547 kb on - strand, within AO353_19285 at 4227.547 kb on - strand, within AO353_19285 at 4227.547 kb on - strand, within AO353_19285 at 4227.547 kb on - strand, within AO353_19285 at 4227.583 kb on + strand, within AO353_19285 at 4227.583 kb on + strand, within AO353_19285 at 4227.583 kb on + strand, within AO353_19285 at 4227.584 kb on - strand, within AO353_19285 at 4227.584 kb on - strand, within AO353_19285
Per-strain Table
Position Strand Gene LocusTag Fraction L-Aspartic Acid (C) remove 4,225,385 - AO353_19275 0.72 +0.1 4,225,523 + AO353_19275 0.88 +0.3 4,225,523 + AO353_19275 0.88 +1.1 4,225,523 + AO353_19275 0.88 -1.6 4,225,524 - AO353_19275 0.88 +0.3 4,225,628 + -1.6 4,225,628 + -2.3 4,225,628 + +1.0 4,225,628 + +1.9 4,225,628 + -0.1 4,225,628 + +0.5 4,225,628 + -1.1 4,225,628 + -1.2 4,225,629 - -1.3 4,225,629 - -0.6 4,225,629 - +0.9 4,225,629 - +1.3 4,225,629 - +0.6 4,225,629 - +1.9 4,225,629 - +1.3 4,225,629 - -0.0 4,225,629 - -0.1 4,225,633 - -2.1 4,225,633 - -0.1 4,225,633 - +1.3 4,225,633 - +2.0 4,225,712 - +0.1 4,225,712 - -0.3 4,225,719 + -2.1 4,225,719 + +0.3 4,225,720 - -1.5 4,225,720 - +0.7 4,225,735 - +0.2 4,225,771 + -1.9 4,225,771 + +0.9 4,225,771 + -0.9 4,225,771 + +0.4 4,225,772 - +0.1 4,225,772 - -1.5 4,225,772 - -1.5 4,225,772 - -0.7 4,225,772 - -1.3 4,225,772 - -1.0 4,225,823 + +0.1 4,225,824 - -0.5 4,225,824 - +0.1 4,225,837 - -0.6 4,225,840 - -0.6 4,225,846 + -0.7 4,225,846 + +0.9 4,225,846 + +2.9 4,225,846 + +0.1 4,225,846 + -0.9 4,225,846 + +0.1 4,225,846 + -0.3 4,225,846 + -0.5 4,225,846 + +0.1 4,225,846 + -1.7 4,225,847 - -0.5 4,225,847 - -0.6 4,225,847 - +0.6 4,225,847 - +2.4 4,225,847 - -0.9 4,225,847 - -0.1 4,225,852 - +0.6 4,225,870 + +0.9 4,225,870 + -0.3 4,225,871 - -0.1 4,225,871 - +0.1 4,225,872 + -1.1 4,225,872 + -0.8 4,225,872 + +4.2 4,225,872 + +0.7 4,225,872 + -1.6 4,225,872 + -1.0 4,225,872 + +1.6 4,225,872 + -2.2 4,225,872 + -0.9 4,225,872 + -1.5 4,225,872 + +0.4 4,225,872 + +0.9 4,225,872 + +1.4 4,225,872 + +0.6 4,225,872 + -0.6 4,225,873 - +0.3 4,225,873 - +0.9 4,225,873 - +1.9 4,225,873 - -0.5 4,225,873 - +0.3 4,225,873 - +0.2 4,225,873 - +0.1 4,225,873 - -0.1 4,225,873 - -1.5 4,225,873 - -1.6 4,225,873 - +0.5 4,225,873 - -0.7 4,225,873 - -2.2 4,225,873 - +1.4 4,225,874 + -0.6 4,225,874 + +0.3 4,225,874 + -0.9 4,225,874 + -1.0 4,225,874 + -0.5 4,225,874 + -0.3 4,225,874 + +1.9 4,225,874 + -0.2 4,225,874 + +0.9 4,225,874 + +0.4 4,225,874 + +0.9 4,225,874 + +0.9 4,225,875 - +2.9 4,225,875 - -1.7 4,225,875 - -1.1 4,225,875 - -1.0 4,225,875 - -0.7 4,225,875 - -1.3 4,225,875 - +1.4 4,225,875 - -0.2 4,225,875 - +1.1 4,225,912 + -0.3 4,225,912 + -0.6 4,225,912 + +0.7 4,225,912 + -0.3 4,225,912 + +0.5 4,225,912 + -0.5 4,225,912 + +1.5 4,225,912 + +0.6 4,225,912 + -2.7 4,225,912 + +1.3 4,225,912 + -1.3 4,225,912 + +0.4 4,225,912 + -0.9 4,225,912 + +0.2 4,225,912 + -0.3 4,225,912 + -0.3 4,225,912 + +0.9 4,225,913 - +1.9 4,225,913 - -1.1 4,225,913 - -0.7 4,225,913 - +0.1 4,225,913 - +1.5 4,225,913 - -0.9 4,225,913 - +0.1 4,225,913 - -0.0 4,225,966 + -0.6 4,225,966 + -1.6 4,225,966 + +0.9 4,225,967 - -0.1 4,225,967 - -1.5 4,225,974 + -1.0 4,226,028 + -0.5 4,226,029 - -0.9 4,226,040 + +0.1 4,226,043 + +1.1 4,226,060 + -0.9 4,226,067 + -0.3 4,226,068 - -1.0 4,226,075 - +1.1 4,226,075 - -1.5 4,226,113 + +1.9 4,226,114 - +0.4 4,226,140 + -0.5 4,226,140 + +1.1 4,226,258 + AO353_19280 0.22 -2.6 4,226,258 + AO353_19280 0.22 +1.0 4,226,258 + AO353_19280 0.22 -1.3 4,226,258 + AO353_19280 0.22 -0.9 4,226,259 - AO353_19280 0.23 -1.1 4,226,608 + -1.8 4,226,680 + -0.5 4,226,680 + +0.1 4,226,680 + -1.8 4,226,681 - -1.9 4,226,681 - -2.3 4,226,685 + -0.7 4,226,685 + +0.6 4,226,685 + -1.5 4,226,685 + +0.4 4,226,685 + -0.3 4,226,686 - +0.3 4,226,686 - -0.5 4,226,711 + -1.5 4,226,834 + +0.5 4,226,834 + +0.9 4,226,834 + +0.4 4,226,834 + -0.3 4,226,834 + -1.1 4,226,834 + -1.2 4,226,834 + +0.3 4,226,834 + +0.3 4,226,835 - +0.6 4,226,835 - -0.1 4,226,878 + +1.9 4,226,878 + -2.5 4,226,878 + +0.7 4,226,878 + +0.1 4,226,935 + +1.6 4,226,942 + -0.5 4,226,959 - -0.5 4,226,959 - -1.8 4,227,055 + +1.3 4,227,067 + -1.1 4,227,212 + -0.1 4,227,212 + -2.0 4,227,212 + -0.5 4,227,212 + -1.8 4,227,212 + +1.1 4,227,212 + +0.4 4,227,212 + -0.7 4,227,212 + -0.1 4,227,213 - -0.5 4,227,213 - -0.3 4,227,213 - -0.0 4,227,213 - -0.8 4,227,213 - +0.1 4,227,213 - -0.5 4,227,213 - +1.3 4,227,213 - -2.5 4,227,213 - -0.6 4,227,284 + AO353_19285 0.10 -1.3 4,227,284 + AO353_19285 0.10 +0.3 4,227,285 - AO353_19285 0.10 +0.2 4,227,285 - AO353_19285 0.10 -0.5 4,227,285 - AO353_19285 0.10 -0.7 4,227,285 - AO353_19285 0.10 +1.4 4,227,285 - AO353_19285 0.10 -0.5 4,227,478 + AO353_19285 0.31 +1.4 4,227,478 + +0.3 4,227,479 - AO353_19285 0.31 +0.3 4,227,479 - AO353_19285 0.31 -0.0 4,227,479 - AO353_19285 0.31 +0.3 4,227,479 - AO353_19285 0.31 -0.9 4,227,546 + AO353_19285 0.38 +0.3 4,227,546 + AO353_19285 0.38 +0.0 4,227,547 - AO353_19285 0.38 +0.9 4,227,547 - AO353_19285 0.38 +1.1 4,227,547 - AO353_19285 0.38 +1.4 4,227,547 - AO353_19285 0.38 -3.3 4,227,583 + AO353_19285 0.42 +1.6 4,227,583 + AO353_19285 0.42 -1.3 4,227,583 + AO353_19285 0.42 -1.1 4,227,584 - AO353_19285 0.42 +1.9 4,227,584 - AO353_19285 0.42 -1.0
Or see this region's nucleotide sequence