Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_19280

Experiment: L-Aspartic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_19275 and AO353_19280 are separated by 520 nucleotidesAO353_19280 and AO353_19285 are separated by 566 nucleotides AO353_19275: AO353_19275 - histidine kinase, at 4,224,739 to 4,225,632 _19275 AO353_19280: AO353_19280 - hypothetical protein, at 4,226,153 to 4,226,623 _19280 AO353_19285: AO353_19285 - chemotaxis protein CheW, at 4,227,190 to 4,228,125 _19285 Position (kb) 4226 4227Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4225.385 kb on - strand, within AO353_19275at 4225.523 kb on + strand, within AO353_19275at 4225.523 kb on + strand, within AO353_19275at 4225.523 kb on + strand, within AO353_19275at 4225.524 kb on - strand, within AO353_19275at 4225.628 kb on + strandat 4225.628 kb on + strandat 4225.628 kb on + strandat 4225.628 kb on + strandat 4225.628 kb on + strandat 4225.628 kb on + strandat 4225.628 kb on + strandat 4225.628 kb on + strandat 4225.629 kb on - strandat 4225.629 kb on - strandat 4225.629 kb on - strandat 4225.629 kb on - strandat 4225.629 kb on - strandat 4225.629 kb on - strandat 4225.629 kb on - strandat 4225.629 kb on - strandat 4225.629 kb on - strandat 4225.633 kb on - strandat 4225.633 kb on - strandat 4225.633 kb on - strandat 4225.633 kb on - strandat 4225.712 kb on - strandat 4225.712 kb on - strandat 4225.719 kb on + strandat 4225.719 kb on + strandat 4225.720 kb on - strandat 4225.720 kb on - strandat 4225.735 kb on - strandat 4225.771 kb on + strandat 4225.771 kb on + strandat 4225.771 kb on + strandat 4225.771 kb on + strandat 4225.772 kb on - strandat 4225.772 kb on - strandat 4225.772 kb on - strandat 4225.772 kb on - strandat 4225.772 kb on - strandat 4225.772 kb on - strandat 4225.823 kb on + strandat 4225.824 kb on - strandat 4225.824 kb on - strandat 4225.837 kb on - strandat 4225.840 kb on - strandat 4225.846 kb on + strandat 4225.846 kb on + strandat 4225.846 kb on + strandat 4225.846 kb on + strandat 4225.846 kb on + strandat 4225.846 kb on + strandat 4225.846 kb on + strandat 4225.846 kb on + strandat 4225.846 kb on + strandat 4225.846 kb on + strandat 4225.847 kb on - strandat 4225.847 kb on - strandat 4225.847 kb on - strandat 4225.847 kb on - strandat 4225.847 kb on - strandat 4225.847 kb on - strandat 4225.852 kb on - strandat 4225.870 kb on + strandat 4225.870 kb on + strandat 4225.871 kb on - strandat 4225.871 kb on - strandat 4225.872 kb on + strandat 4225.872 kb on + strandat 4225.872 kb on + strandat 4225.872 kb on + strandat 4225.872 kb on + strandat 4225.872 kb on + strandat 4225.872 kb on + strandat 4225.872 kb on + strandat 4225.872 kb on + strandat 4225.872 kb on + strandat 4225.872 kb on + strandat 4225.872 kb on + strandat 4225.872 kb on + strandat 4225.872 kb on + strandat 4225.872 kb on + strandat 4225.873 kb on - strandat 4225.873 kb on - strandat 4225.873 kb on - strandat 4225.873 kb on - strandat 4225.873 kb on - strandat 4225.873 kb on - strandat 4225.873 kb on - strandat 4225.873 kb on - strandat 4225.873 kb on - strandat 4225.873 kb on - strandat 4225.873 kb on - strandat 4225.873 kb on - strandat 4225.873 kb on - strandat 4225.873 kb on - strandat 4225.874 kb on + strandat 4225.874 kb on + strandat 4225.874 kb on + strandat 4225.874 kb on + strandat 4225.874 kb on + strandat 4225.874 kb on + strandat 4225.874 kb on + strandat 4225.874 kb on + strandat 4225.874 kb on + strandat 4225.874 kb on + strandat 4225.874 kb on + strandat 4225.874 kb on + strandat 4225.875 kb on - strandat 4225.875 kb on - strandat 4225.875 kb on - strandat 4225.875 kb on - strandat 4225.875 kb on - strandat 4225.875 kb on - strandat 4225.875 kb on - strandat 4225.875 kb on - strandat 4225.875 kb on - strandat 4225.912 kb on + strandat 4225.912 kb on + strandat 4225.912 kb on + strandat 4225.912 kb on + strandat 4225.912 kb on + strandat 4225.912 kb on + strandat 4225.912 kb on + strandat 4225.912 kb on + strandat 4225.912 kb on + strandat 4225.912 kb on + strandat 4225.912 kb on + strandat 4225.912 kb on + strandat 4225.912 kb on + strandat 4225.912 kb on + strandat 4225.912 kb on + strandat 4225.912 kb on + strandat 4225.912 kb on + strandat 4225.913 kb on - strandat 4225.913 kb on - strandat 4225.913 kb on - strandat 4225.913 kb on - strandat 4225.913 kb on - strandat 4225.913 kb on - strandat 4225.913 kb on - strandat 4225.913 kb on - strandat 4225.966 kb on + strandat 4225.966 kb on + strandat 4225.966 kb on + strandat 4225.967 kb on - strandat 4225.967 kb on - strandat 4225.974 kb on + strandat 4226.028 kb on + strandat 4226.029 kb on - strandat 4226.040 kb on + strandat 4226.043 kb on + strandat 4226.060 kb on + strandat 4226.067 kb on + strandat 4226.068 kb on - strandat 4226.075 kb on - strandat 4226.075 kb on - strandat 4226.113 kb on + strandat 4226.114 kb on - strandat 4226.140 kb on + strandat 4226.140 kb on + strandat 4226.258 kb on + strand, within AO353_19280at 4226.258 kb on + strand, within AO353_19280at 4226.258 kb on + strand, within AO353_19280at 4226.258 kb on + strand, within AO353_19280at 4226.259 kb on - strand, within AO353_19280at 4226.608 kb on + strandat 4226.680 kb on + strandat 4226.680 kb on + strandat 4226.680 kb on + strandat 4226.681 kb on - strandat 4226.681 kb on - strandat 4226.685 kb on + strandat 4226.685 kb on + strandat 4226.685 kb on + strandat 4226.685 kb on + strandat 4226.685 kb on + strandat 4226.686 kb on - strandat 4226.686 kb on - strandat 4226.711 kb on + strandat 4226.834 kb on + strandat 4226.834 kb on + strandat 4226.834 kb on + strandat 4226.834 kb on + strandat 4226.834 kb on + strandat 4226.834 kb on + strandat 4226.834 kb on + strandat 4226.834 kb on + strandat 4226.835 kb on - strandat 4226.835 kb on - strandat 4226.878 kb on + strandat 4226.878 kb on + strandat 4226.878 kb on + strandat 4226.878 kb on + strandat 4226.935 kb on + strandat 4226.942 kb on + strandat 4226.959 kb on - strandat 4226.959 kb on - strandat 4227.055 kb on + strandat 4227.067 kb on + strandat 4227.212 kb on + strandat 4227.212 kb on + strandat 4227.212 kb on + strandat 4227.212 kb on + strandat 4227.212 kb on + strandat 4227.212 kb on + strandat 4227.212 kb on + strandat 4227.212 kb on + strandat 4227.213 kb on - strandat 4227.213 kb on - strandat 4227.213 kb on - strandat 4227.213 kb on - strandat 4227.213 kb on - strandat 4227.213 kb on - strandat 4227.213 kb on - strandat 4227.213 kb on - strandat 4227.213 kb on - strandat 4227.284 kb on + strand, within AO353_19285at 4227.284 kb on + strand, within AO353_19285at 4227.285 kb on - strand, within AO353_19285at 4227.285 kb on - strand, within AO353_19285at 4227.285 kb on - strand, within AO353_19285at 4227.285 kb on - strand, within AO353_19285at 4227.285 kb on - strand, within AO353_19285at 4227.478 kb on + strand, within AO353_19285at 4227.478 kb on + strandat 4227.479 kb on - strand, within AO353_19285at 4227.479 kb on - strand, within AO353_19285at 4227.479 kb on - strand, within AO353_19285at 4227.479 kb on - strand, within AO353_19285at 4227.546 kb on + strand, within AO353_19285at 4227.546 kb on + strand, within AO353_19285at 4227.547 kb on - strand, within AO353_19285at 4227.547 kb on - strand, within AO353_19285at 4227.547 kb on - strand, within AO353_19285at 4227.547 kb on - strand, within AO353_19285at 4227.583 kb on + strand, within AO353_19285at 4227.583 kb on + strand, within AO353_19285at 4227.583 kb on + strand, within AO353_19285at 4227.584 kb on - strand, within AO353_19285at 4227.584 kb on - strand, within AO353_19285

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
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4,225,385 - AO353_19275 0.72 +0.1
4,225,523 + AO353_19275 0.88 +0.3
4,225,523 + AO353_19275 0.88 +1.1
4,225,523 + AO353_19275 0.88 -1.6
4,225,524 - AO353_19275 0.88 +0.3
4,225,628 + -1.6
4,225,628 + -2.3
4,225,628 + +1.0
4,225,628 + +1.9
4,225,628 + -0.1
4,225,628 + +0.5
4,225,628 + -1.1
4,225,628 + -1.2
4,225,629 - -1.3
4,225,629 - -0.6
4,225,629 - +0.9
4,225,629 - +1.3
4,225,629 - +0.6
4,225,629 - +1.9
4,225,629 - +1.3
4,225,629 - -0.0
4,225,629 - -0.1
4,225,633 - -2.1
4,225,633 - -0.1
4,225,633 - +1.3
4,225,633 - +2.0
4,225,712 - +0.1
4,225,712 - -0.3
4,225,719 + -2.1
4,225,719 + +0.3
4,225,720 - -1.5
4,225,720 - +0.7
4,225,735 - +0.2
4,225,771 + -1.9
4,225,771 + +0.9
4,225,771 + -0.9
4,225,771 + +0.4
4,225,772 - +0.1
4,225,772 - -1.5
4,225,772 - -1.5
4,225,772 - -0.7
4,225,772 - -1.3
4,225,772 - -1.0
4,225,823 + +0.1
4,225,824 - -0.5
4,225,824 - +0.1
4,225,837 - -0.6
4,225,840 - -0.6
4,225,846 + -0.7
4,225,846 + +0.9
4,225,846 + +2.9
4,225,846 + +0.1
4,225,846 + -0.9
4,225,846 + +0.1
4,225,846 + -0.3
4,225,846 + -0.5
4,225,846 + +0.1
4,225,846 + -1.7
4,225,847 - -0.5
4,225,847 - -0.6
4,225,847 - +0.6
4,225,847 - +2.4
4,225,847 - -0.9
4,225,847 - -0.1
4,225,852 - +0.6
4,225,870 + +0.9
4,225,870 + -0.3
4,225,871 - -0.1
4,225,871 - +0.1
4,225,872 + -1.1
4,225,872 + -0.8
4,225,872 + +4.2
4,225,872 + +0.7
4,225,872 + -1.6
4,225,872 + -1.0
4,225,872 + +1.6
4,225,872 + -2.2
4,225,872 + -0.9
4,225,872 + -1.5
4,225,872 + +0.4
4,225,872 + +0.9
4,225,872 + +1.4
4,225,872 + +0.6
4,225,872 + -0.6
4,225,873 - +0.3
4,225,873 - +0.9
4,225,873 - +1.9
4,225,873 - -0.5
4,225,873 - +0.3
4,225,873 - +0.2
4,225,873 - +0.1
4,225,873 - -0.1
4,225,873 - -1.5
4,225,873 - -1.6
4,225,873 - +0.5
4,225,873 - -0.7
4,225,873 - -2.2
4,225,873 - +1.4
4,225,874 + -0.6
4,225,874 + +0.3
4,225,874 + -0.9
4,225,874 + -1.0
4,225,874 + -0.5
4,225,874 + -0.3
4,225,874 + +1.9
4,225,874 + -0.2
4,225,874 + +0.9
4,225,874 + +0.4
4,225,874 + +0.9
4,225,874 + +0.9
4,225,875 - +2.9
4,225,875 - -1.7
4,225,875 - -1.1
4,225,875 - -1.0
4,225,875 - -0.7
4,225,875 - -1.3
4,225,875 - +1.4
4,225,875 - -0.2
4,225,875 - +1.1
4,225,912 + -0.3
4,225,912 + -0.6
4,225,912 + +0.7
4,225,912 + -0.3
4,225,912 + +0.5
4,225,912 + -0.5
4,225,912 + +1.5
4,225,912 + +0.6
4,225,912 + -2.7
4,225,912 + +1.3
4,225,912 + -1.3
4,225,912 + +0.4
4,225,912 + -0.9
4,225,912 + +0.2
4,225,912 + -0.3
4,225,912 + -0.3
4,225,912 + +0.9
4,225,913 - +1.9
4,225,913 - -1.1
4,225,913 - -0.7
4,225,913 - +0.1
4,225,913 - +1.5
4,225,913 - -0.9
4,225,913 - +0.1
4,225,913 - -0.0
4,225,966 + -0.6
4,225,966 + -1.6
4,225,966 + +0.9
4,225,967 - -0.1
4,225,967 - -1.5
4,225,974 + -1.0
4,226,028 + -0.5
4,226,029 - -0.9
4,226,040 + +0.1
4,226,043 + +1.1
4,226,060 + -0.9
4,226,067 + -0.3
4,226,068 - -1.0
4,226,075 - +1.1
4,226,075 - -1.5
4,226,113 + +1.9
4,226,114 - +0.4
4,226,140 + -0.5
4,226,140 + +1.1
4,226,258 + AO353_19280 0.22 -2.6
4,226,258 + AO353_19280 0.22 +1.0
4,226,258 + AO353_19280 0.22 -1.3
4,226,258 + AO353_19280 0.22 -0.9
4,226,259 - AO353_19280 0.23 -1.1
4,226,608 + -1.8
4,226,680 + -0.5
4,226,680 + +0.1
4,226,680 + -1.8
4,226,681 - -1.9
4,226,681 - -2.3
4,226,685 + -0.7
4,226,685 + +0.6
4,226,685 + -1.5
4,226,685 + +0.4
4,226,685 + -0.3
4,226,686 - +0.3
4,226,686 - -0.5
4,226,711 + -1.5
4,226,834 + +0.5
4,226,834 + +0.9
4,226,834 + +0.4
4,226,834 + -0.3
4,226,834 + -1.1
4,226,834 + -1.2
4,226,834 + +0.3
4,226,834 + +0.3
4,226,835 - +0.6
4,226,835 - -0.1
4,226,878 + +1.9
4,226,878 + -2.5
4,226,878 + +0.7
4,226,878 + +0.1
4,226,935 + +1.6
4,226,942 + -0.5
4,226,959 - -0.5
4,226,959 - -1.8
4,227,055 + +1.3
4,227,067 + -1.1
4,227,212 + -0.1
4,227,212 + -2.0
4,227,212 + -0.5
4,227,212 + -1.8
4,227,212 + +1.1
4,227,212 + +0.4
4,227,212 + -0.7
4,227,212 + -0.1
4,227,213 - -0.5
4,227,213 - -0.3
4,227,213 - -0.0
4,227,213 - -0.8
4,227,213 - +0.1
4,227,213 - -0.5
4,227,213 - +1.3
4,227,213 - -2.5
4,227,213 - -0.6
4,227,284 + AO353_19285 0.10 -1.3
4,227,284 + AO353_19285 0.10 +0.3
4,227,285 - AO353_19285 0.10 +0.2
4,227,285 - AO353_19285 0.10 -0.5
4,227,285 - AO353_19285 0.10 -0.7
4,227,285 - AO353_19285 0.10 +1.4
4,227,285 - AO353_19285 0.10 -0.5
4,227,478 + AO353_19285 0.31 +1.4
4,227,478 + +0.3
4,227,479 - AO353_19285 0.31 +0.3
4,227,479 - AO353_19285 0.31 -0.0
4,227,479 - AO353_19285 0.31 +0.3
4,227,479 - AO353_19285 0.31 -0.9
4,227,546 + AO353_19285 0.38 +0.3
4,227,546 + AO353_19285 0.38 +0.0
4,227,547 - AO353_19285 0.38 +0.9
4,227,547 - AO353_19285 0.38 +1.1
4,227,547 - AO353_19285 0.38 +1.4
4,227,547 - AO353_19285 0.38 -3.3
4,227,583 + AO353_19285 0.42 +1.6
4,227,583 + AO353_19285 0.42 -1.3
4,227,583 + AO353_19285 0.42 -1.1
4,227,584 - AO353_19285 0.42 +1.9
4,227,584 - AO353_19285 0.42 -1.0

Or see this region's nucleotide sequence