Experiment: L-Aspartic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_19050 and AO353_19055 are separated by 93 nucleotides AO353_19055 and AO353_19060 are separated by 113 nucleotides AO353_19060 and AO353_19065 are separated by 5 nucleotides AO353_19065 and AO353_19070 are separated by 2 nucleotides
AO353_19050: AO353_19050 - 5'-nucleotidase, at 4,182,240 to 4,183,145
_19050
AO353_19055: AO353_19055 - universal stress protein UspA, at 4,183,239 to 4,183,739
_19055
AO353_19060: AO353_19060 - CysB family transcriptional regulator, at 4,183,853 to 4,184,827
_19060
AO353_19065: AO353_19065 - transcription elongation factor GreAB, at 4,184,833 to 4,185,315
_19065
AO353_19070: AO353_19070 - hypothetical protein, at 4,185,318 to 4,185,719
_19070
Position (kb) 4183
4184
4185 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 4182.956 kb on + strand, within AO353_19050 at 4182.957 kb on - strand, within AO353_19050 at 4182.975 kb on - strand, within AO353_19050 at 4183.143 kb on + strand at 4183.144 kb on - strand at 4183.144 kb on - strand at 4183.195 kb on + strand at 4183.206 kb on - strand at 4183.206 kb on - strand at 4183.257 kb on + strand at 4183.257 kb on + strand at 4183.257 kb on + strand at 4183.257 kb on + strand at 4183.257 kb on + strand at 4183.257 kb on + strand at 4183.257 kb on + strand at 4183.257 kb on + strand at 4183.257 kb on + strand at 4183.257 kb on + strand at 4183.257 kb on + strand at 4183.257 kb on + strand at 4183.257 kb on + strand at 4183.257 kb on + strand at 4183.257 kb on + strand at 4183.258 kb on - strand at 4183.258 kb on - strand at 4183.258 kb on - strand at 4183.258 kb on - strand at 4183.258 kb on - strand at 4183.258 kb on - strand at 4183.258 kb on - strand at 4183.258 kb on - strand at 4183.258 kb on - strand at 4183.258 kb on - strand at 4183.278 kb on + strand at 4183.278 kb on + strand at 4183.279 kb on - strand at 4183.279 kb on - strand at 4183.338 kb on + strand, within AO353_19055 at 4183.338 kb on + strand, within AO353_19055 at 4183.338 kb on + strand, within AO353_19055 at 4183.338 kb on + strand, within AO353_19055 at 4183.338 kb on + strand, within AO353_19055 at 4183.338 kb on + strand, within AO353_19055 at 4183.339 kb on - strand, within AO353_19055 at 4183.339 kb on - strand, within AO353_19055 at 4183.339 kb on - strand, within AO353_19055 at 4183.339 kb on - strand, within AO353_19055 at 4183.339 kb on - strand, within AO353_19055 at 4183.339 kb on - strand, within AO353_19055 at 4183.339 kb on - strand, within AO353_19055 at 4183.339 kb on - strand, within AO353_19055 at 4183.361 kb on + strand, within AO353_19055 at 4183.361 kb on + strand, within AO353_19055 at 4183.362 kb on - strand, within AO353_19055 at 4183.362 kb on - strand, within AO353_19055 at 4183.395 kb on + strand, within AO353_19055 at 4183.395 kb on + strand, within AO353_19055 at 4183.395 kb on + strand, within AO353_19055 at 4183.395 kb on + strand, within AO353_19055 at 4183.396 kb on - strand, within AO353_19055 at 4183.396 kb on - strand, within AO353_19055 at 4183.396 kb on - strand, within AO353_19055 at 4183.396 kb on - strand, within AO353_19055 at 4183.396 kb on - strand, within AO353_19055 at 4183.396 kb on - strand, within AO353_19055 at 4183.540 kb on + strand, within AO353_19055 at 4183.540 kb on + strand, within AO353_19055 at 4183.540 kb on + strand, within AO353_19055 at 4183.541 kb on - strand, within AO353_19055 at 4183.541 kb on - strand, within AO353_19055 at 4183.609 kb on + strand, within AO353_19055 at 4183.609 kb on + strand, within AO353_19055 at 4183.610 kb on - strand, within AO353_19055 at 4183.610 kb on - strand, within AO353_19055 at 4183.733 kb on + strand at 4183.733 kb on + strand at 4183.737 kb on + strand at 4183.737 kb on + strand at 4183.737 kb on + strand at 4183.737 kb on + strand at 4183.737 kb on + strand at 4183.738 kb on - strand at 4183.798 kb on - strand at 4183.800 kb on - strand at 4183.800 kb on - strand at 4183.803 kb on + strand at 4183.803 kb on + strand at 4183.803 kb on + strand at 4183.806 kb on - strand at 4183.832 kb on + strand at 4183.832 kb on + strand at 4183.833 kb on - strand at 4183.833 kb on - strand at 4183.852 kb on + strand at 4183.852 kb on + strand at 4183.852 kb on + strand at 4183.853 kb on - strand at 4183.874 kb on + strand at 4183.874 kb on + strand at 4183.875 kb on - strand at 4183.931 kb on + strand at 4183.931 kb on + strand at 4183.931 kb on + strand at 4183.931 kb on + strand at 4183.932 kb on - strand at 4183.932 kb on - strand at 4183.932 kb on - strand at 4184.169 kb on - strand, within AO353_19060 at 4184.362 kb on - strand, within AO353_19060 at 4184.441 kb on + strand, within AO353_19060 at 4184.441 kb on + strand, within AO353_19060 at 4184.441 kb on + strand at 4184.441 kb on + strand, within AO353_19060 at 4184.441 kb on + strand at 4184.441 kb on + strand at 4184.441 kb on + strand, within AO353_19060 at 4184.442 kb on - strand, within AO353_19060 at 4184.442 kb on - strand, within AO353_19060 at 4184.442 kb on - strand, within AO353_19060 at 4184.442 kb on - strand, within AO353_19060 at 4184.442 kb on - strand at 4184.442 kb on - strand, within AO353_19060 at 4184.442 kb on - strand, within AO353_19060 at 4184.549 kb on + strand, within AO353_19060 at 4184.549 kb on + strand, within AO353_19060 at 4184.549 kb on + strand, within AO353_19060 at 4184.549 kb on + strand, within AO353_19060 at 4184.549 kb on + strand, within AO353_19060 at 4184.549 kb on + strand, within AO353_19060 at 4184.549 kb on + strand, within AO353_19060 at 4184.549 kb on + strand, within AO353_19060 at 4184.549 kb on + strand, within AO353_19060 at 4184.550 kb on - strand, within AO353_19060 at 4184.550 kb on - strand, within AO353_19060 at 4184.550 kb on - strand, within AO353_19060 at 4184.550 kb on - strand, within AO353_19060 at 4184.550 kb on - strand, within AO353_19060 at 4184.814 kb on + strand at 4184.834 kb on + strand at 4184.834 kb on + strand at 4184.834 kb on + strand at 4184.835 kb on - strand at 4184.835 kb on - strand at 4184.835 kb on - strand at 4185.080 kb on + strand, within AO353_19065 at 4185.080 kb on + strand, within AO353_19065 at 4185.080 kb on + strand, within AO353_19065 at 4185.080 kb on + strand, within AO353_19065 at 4185.080 kb on + strand, within AO353_19065 at 4185.081 kb on - strand, within AO353_19065 at 4185.081 kb on - strand, within AO353_19065 at 4185.081 kb on - strand, within AO353_19065 at 4185.161 kb on + strand, within AO353_19065 at 4185.161 kb on + strand, within AO353_19065 at 4185.161 kb on + strand, within AO353_19065 at 4185.161 kb on + strand, within AO353_19065 at 4185.161 kb on + strand, within AO353_19065 at 4185.161 kb on + strand, within AO353_19065 at 4185.162 kb on - strand, within AO353_19065 at 4185.162 kb on - strand, within AO353_19065 at 4185.188 kb on + strand, within AO353_19065 at 4185.188 kb on + strand, within AO353_19065 at 4185.188 kb on + strand, within AO353_19065 at 4185.188 kb on + strand, within AO353_19065 at 4185.188 kb on + strand, within AO353_19065 at 4185.188 kb on + strand, within AO353_19065 at 4185.188 kb on + strand, within AO353_19065 at 4185.189 kb on - strand, within AO353_19065 at 4185.189 kb on - strand, within AO353_19065 at 4185.189 kb on - strand, within AO353_19065 at 4185.189 kb on - strand, within AO353_19065 at 4185.189 kb on - strand, within AO353_19065 at 4185.231 kb on - strand, within AO353_19065 at 4185.419 kb on + strand, within AO353_19070 at 4185.419 kb on + strand, within AO353_19070 at 4185.478 kb on + strand, within AO353_19070 at 4185.478 kb on + strand, within AO353_19070 at 4185.478 kb on + strand, within AO353_19070 at 4185.478 kb on + strand, within AO353_19070 at 4185.479 kb on - strand, within AO353_19070 at 4185.479 kb on - strand, within AO353_19070 at 4185.537 kb on + strand, within AO353_19070 at 4185.712 kb on + strand at 4185.771 kb on - strand at 4185.803 kb on + strand at 4185.803 kb on + strand at 4185.815 kb on + strand at 4185.815 kb on + strand at 4185.815 kb on + strand at 4185.815 kb on + strand at 4185.815 kb on + strand at 4185.815 kb on + strand at 4185.816 kb on - strand at 4185.816 kb on - strand at 4185.816 kb on - strand at 4185.816 kb on - strand at 4185.816 kb on - strand at 4185.816 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Aspartic Acid (C) remove 4,182,956 + AO353_19050 0.79 -0.5 4,182,957 - AO353_19050 0.79 +0.4 4,182,975 - AO353_19050 0.81 -2.1 4,183,143 + +0.9 4,183,144 - -0.3 4,183,144 - +0.1 4,183,195 + +0.9 4,183,206 - -0.4 4,183,206 - +0.3 4,183,257 + -1.8 4,183,257 + -0.5 4,183,257 + -0.9 4,183,257 + -0.9 4,183,257 + -1.2 4,183,257 + -0.7 4,183,257 + +0.6 4,183,257 + -0.3 4,183,257 + -0.3 4,183,257 + -0.6 4,183,257 + -0.3 4,183,257 + -1.1 4,183,257 + -0.9 4,183,257 + -0.1 4,183,257 + -2.1 4,183,258 - -0.1 4,183,258 - +0.7 4,183,258 - -1.4 4,183,258 - +0.9 4,183,258 - -1.5 4,183,258 - +0.1 4,183,258 - +0.3 4,183,258 - -1.4 4,183,258 - +0.5 4,183,258 - -0.1 4,183,278 + -0.9 4,183,278 + +0.4 4,183,279 - -1.3 4,183,279 - -0.8 4,183,338 + AO353_19055 0.20 -0.7 4,183,338 + AO353_19055 0.20 +0.9 4,183,338 + AO353_19055 0.20 -0.6 4,183,338 + AO353_19055 0.20 +0.1 4,183,338 + AO353_19055 0.20 +1.1 4,183,338 + AO353_19055 0.20 -0.3 4,183,339 - AO353_19055 0.20 -0.4 4,183,339 - AO353_19055 0.20 -0.8 4,183,339 - AO353_19055 0.20 +0.1 4,183,339 - AO353_19055 0.20 -1.3 4,183,339 - AO353_19055 0.20 +2.5 4,183,339 - AO353_19055 0.20 +0.5 4,183,339 - AO353_19055 0.20 +0.9 4,183,339 - AO353_19055 0.20 -0.8 4,183,361 + AO353_19055 0.24 -0.5 4,183,361 + AO353_19055 0.24 -0.6 4,183,362 - AO353_19055 0.25 -0.2 4,183,362 - AO353_19055 0.25 -1.1 4,183,395 + AO353_19055 0.31 -0.1 4,183,395 + AO353_19055 0.31 -1.1 4,183,395 + AO353_19055 0.31 -0.7 4,183,395 + AO353_19055 0.31 +3.9 4,183,396 - AO353_19055 0.31 -1.1 4,183,396 - AO353_19055 0.31 -1.7 4,183,396 - AO353_19055 0.31 -1.6 4,183,396 - AO353_19055 0.31 +0.1 4,183,396 - AO353_19055 0.31 -0.4 4,183,396 - AO353_19055 0.31 -0.9 4,183,540 + AO353_19055 0.60 +0.2 4,183,540 + AO353_19055 0.60 -0.1 4,183,540 + AO353_19055 0.60 +0.2 4,183,541 - AO353_19055 0.60 -2.0 4,183,541 - AO353_19055 0.60 +1.3 4,183,609 + AO353_19055 0.74 +0.6 4,183,609 + AO353_19055 0.74 +0.2 4,183,610 - AO353_19055 0.74 -0.4 4,183,610 - AO353_19055 0.74 -0.9 4,183,733 + -0.7 4,183,733 + -0.3 4,183,737 + -1.9 4,183,737 + -1.3 4,183,737 + +0.6 4,183,737 + +1.9 4,183,737 + -0.9 4,183,738 - +0.9 4,183,798 - -0.4 4,183,800 - -1.1 4,183,800 - -0.9 4,183,803 + +0.0 4,183,803 + -0.3 4,183,803 + +0.3 4,183,806 - -0.9 4,183,832 + +0.5 4,183,832 + -2.1 4,183,833 - +1.9 4,183,833 - -1.8 4,183,852 + -0.9 4,183,852 + +0.1 4,183,852 + -1.1 4,183,853 - +0.3 4,183,874 + +0.3 4,183,874 + -1.4 4,183,875 - -1.6 4,183,931 + -1.4 4,183,931 + +1.1 4,183,931 + -0.4 4,183,931 + +0.9 4,183,932 - -1.3 4,183,932 - -0.7 4,183,932 - -0.9 4,184,169 - AO353_19060 0.32 +0.9 4,184,362 - AO353_19060 0.52 +0.9 4,184,441 + AO353_19060 0.60 -0.9 4,184,441 + AO353_19060 0.60 +0.3 4,184,441 + +0.9 4,184,441 + AO353_19060 0.60 -2.2 4,184,441 + -0.7 4,184,441 + -0.3 4,184,441 + AO353_19060 0.60 +0.1 4,184,442 - AO353_19060 0.60 -1.1 4,184,442 - AO353_19060 0.60 -1.4 4,184,442 - AO353_19060 0.60 -0.4 4,184,442 - AO353_19060 0.60 -0.4 4,184,442 - +0.9 4,184,442 - AO353_19060 0.60 -1.1 4,184,442 - AO353_19060 0.60 -1.4 4,184,549 + AO353_19060 0.71 -1.6 4,184,549 + AO353_19060 0.71 -1.7 4,184,549 + AO353_19060 0.71 -1.4 4,184,549 + AO353_19060 0.71 +0.2 4,184,549 + AO353_19060 0.71 +0.3 4,184,549 + AO353_19060 0.71 -1.2 4,184,549 + AO353_19060 0.71 -1.4 4,184,549 + AO353_19060 0.71 +0.9 4,184,549 + AO353_19060 0.71 -0.9 4,184,550 - AO353_19060 0.71 +0.6 4,184,550 - AO353_19060 0.71 +0.9 4,184,550 - AO353_19060 0.71 +0.1 4,184,550 - AO353_19060 0.71 -0.4 4,184,550 - AO353_19060 0.71 -0.4 4,184,814 + +0.9 4,184,834 + -0.5 4,184,834 + -0.9 4,184,834 + -0.9 4,184,835 - -1.4 4,184,835 - +0.9 4,184,835 - -0.4 4,185,080 + AO353_19065 0.51 -1.7 4,185,080 + AO353_19065 0.51 -0.3 4,185,080 + AO353_19065 0.51 -2.1 4,185,080 + AO353_19065 0.51 +1.0 4,185,080 + AO353_19065 0.51 +0.1 4,185,081 - AO353_19065 0.51 +1.5 4,185,081 - AO353_19065 0.51 -0.1 4,185,081 - AO353_19065 0.51 -0.3 4,185,161 + AO353_19065 0.68 +0.2 4,185,161 + AO353_19065 0.68 -0.1 4,185,161 + AO353_19065 0.68 +1.3 4,185,161 + AO353_19065 0.68 +0.9 4,185,161 + AO353_19065 0.68 +0.3 4,185,161 + AO353_19065 0.68 +2.1 4,185,162 - AO353_19065 0.68 -0.1 4,185,162 - AO353_19065 0.68 +1.3 4,185,188 + AO353_19065 0.73 -0.0 4,185,188 + AO353_19065 0.73 +0.5 4,185,188 + AO353_19065 0.73 +0.5 4,185,188 + AO353_19065 0.73 -0.9 4,185,188 + AO353_19065 0.73 -0.4 4,185,188 + AO353_19065 0.73 -0.6 4,185,188 + AO353_19065 0.73 +0.7 4,185,189 - AO353_19065 0.74 -0.9 4,185,189 - AO353_19065 0.74 +0.6 4,185,189 - AO353_19065 0.74 -0.1 4,185,189 - AO353_19065 0.74 -0.9 4,185,189 - AO353_19065 0.74 -1.1 4,185,231 - AO353_19065 0.82 +1.1 4,185,419 + AO353_19070 0.25 +0.3 4,185,419 + AO353_19070 0.25 -0.1 4,185,478 + AO353_19070 0.40 -1.4 4,185,478 + AO353_19070 0.40 +0.9 4,185,478 + AO353_19070 0.40 -0.7 4,185,478 + AO353_19070 0.40 +0.3 4,185,479 - AO353_19070 0.40 +0.1 4,185,479 - AO353_19070 0.40 +0.1 4,185,537 + AO353_19070 0.54 +0.3 4,185,712 + +0.6 4,185,771 - -0.2 4,185,803 + +0.4 4,185,803 + -0.1 4,185,815 + -0.3 4,185,815 + -0.7 4,185,815 + -1.3 4,185,815 + +0.6 4,185,815 + +1.3 4,185,815 + +0.0 4,185,816 - -0.2 4,185,816 - -0.0 4,185,816 - -0.6 4,185,816 - +0.0 4,185,816 - +0.2 4,185,816 - +1.9
Or see this region's nucleotide sequence