Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_17705

Experiment: L-Aspartic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_17700 and AO353_17705 are separated by 190 nucleotidesAO353_17705 and AO353_17710 are separated by 18 nucleotidesAO353_17710 and AO353_17715 are separated by 21 nucleotides AO353_17700: AO353_17700 - GntR family transcriptional regulator, at 3,898,740 to 3,900,206 _17700 AO353_17705: AO353_17705 - amino acid transporter, at 3,900,397 to 3,901,188 _17705 AO353_17710: AO353_17710 - ABC transporter permease, at 3,901,207 to 3,901,944 _17710 AO353_17715: AO353_17715 - ABC transporter permease, at 3,901,966 to 3,902,682 _17715 Position (kb) 3900 3901 3902Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3899.418 kb on + strand, within AO353_17700at 3899.466 kb on + strand, within AO353_17700at 3899.466 kb on + strand, within AO353_17700at 3899.466 kb on + strand, within AO353_17700at 3899.466 kb on + strand, within AO353_17700at 3899.466 kb on + strand, within AO353_17700at 3899.466 kb on + strand, within AO353_17700at 3899.466 kb on + strand, within AO353_17700at 3899.466 kb on + strand, within AO353_17700at 3899.466 kb on + strand, within AO353_17700at 3899.466 kb on + strand, within AO353_17700at 3899.466 kb on + strand, within AO353_17700at 3899.466 kb on + strand, within AO353_17700at 3899.466 kb on + strand, within AO353_17700at 3899.466 kb on + strand, within AO353_17700at 3899.466 kb on + strand, within AO353_17700at 3899.466 kb on + strand, within AO353_17700at 3899.467 kb on - strand, within AO353_17700at 3899.467 kb on - strand, within AO353_17700at 3899.467 kb on - strand, within AO353_17700at 3899.467 kb on - strand, within AO353_17700at 3899.467 kb on - strand, within AO353_17700at 3899.467 kb on - strand, within AO353_17700at 3899.467 kb on - strand, within AO353_17700at 3899.467 kb on - strand, within AO353_17700at 3899.467 kb on - strand, within AO353_17700at 3899.468 kb on + strand, within AO353_17700at 3899.536 kb on - strand, within AO353_17700at 3899.536 kb on - strand, within AO353_17700at 3899.536 kb on - strand, within AO353_17700at 3899.646 kb on + strand, within AO353_17700at 3899.646 kb on + strand, within AO353_17700at 3899.646 kb on + strand, within AO353_17700at 3899.646 kb on + strand, within AO353_17700at 3899.647 kb on - strand, within AO353_17700at 3899.664 kb on + strand, within AO353_17700at 3899.664 kb on + strand, within AO353_17700at 3899.664 kb on + strand, within AO353_17700at 3899.665 kb on - strand, within AO353_17700at 3899.665 kb on - strand, within AO353_17700at 3899.665 kb on - strand, within AO353_17700at 3899.721 kb on + strand, within AO353_17700at 3899.721 kb on + strand, within AO353_17700at 3899.721 kb on + strand, within AO353_17700at 3899.722 kb on - strand, within AO353_17700at 3899.722 kb on - strand, within AO353_17700at 3899.868 kb on + strand, within AO353_17700at 3899.868 kb on + strand, within AO353_17700at 3899.869 kb on - strand, within AO353_17700at 3899.869 kb on - strand, within AO353_17700at 3899.869 kb on - strand, within AO353_17700at 3899.869 kb on - strand, within AO353_17700at 3899.869 kb on - strand, within AO353_17700at 3899.869 kb on - strand, within AO353_17700at 3899.869 kb on - strand, within AO353_17700at 3899.895 kb on + strand, within AO353_17700at 3899.976 kb on + strand, within AO353_17700at 3900.174 kb on - strandat 3900.289 kb on + strandat 3900.306 kb on + strandat 3900.306 kb on + strandat 3900.306 kb on + strandat 3900.313 kb on + strandat 3900.313 kb on + strandat 3900.313 kb on + strandat 3900.313 kb on + strandat 3900.313 kb on + strandat 3900.313 kb on + strandat 3900.314 kb on - strandat 3900.314 kb on - strandat 3900.314 kb on - strandat 3900.314 kb on - strandat 3900.314 kb on - strandat 3900.314 kb on - strandat 3900.329 kb on - strandat 3900.342 kb on - strandat 3900.367 kb on - strandat 3900.367 kb on - strandat 3900.398 kb on + strandat 3900.398 kb on + strandat 3900.399 kb on - strandat 3900.466 kb on + strandat 3900.466 kb on + strandat 3900.467 kb on - strandat 3900.467 kb on - strandat 3900.480 kb on + strand, within AO353_17705at 3900.481 kb on - strand, within AO353_17705at 3900.602 kb on - strand, within AO353_17705at 3900.701 kb on - strand, within AO353_17705at 3900.738 kb on - strand, within AO353_17705at 3900.740 kb on + strand, within AO353_17705at 3900.740 kb on + strand, within AO353_17705at 3900.740 kb on + strand, within AO353_17705at 3900.740 kb on + strand, within AO353_17705at 3900.740 kb on + strand, within AO353_17705at 3900.741 kb on - strand, within AO353_17705at 3900.741 kb on - strand, within AO353_17705at 3900.755 kb on + strand, within AO353_17705at 3901.045 kb on - strand, within AO353_17705at 3901.050 kb on + strand, within AO353_17705at 3901.050 kb on + strand, within AO353_17705at 3901.050 kb on + strand, within AO353_17705at 3901.050 kb on + strand, within AO353_17705at 3901.051 kb on - strand, within AO353_17705at 3901.051 kb on - strand, within AO353_17705at 3901.152 kb on + strandat 3901.152 kb on + strandat 3901.152 kb on + strandat 3901.152 kb on + strandat 3901.152 kb on + strandat 3901.153 kb on - strandat 3901.153 kb on - strandat 3901.153 kb on - strandat 3901.153 kb on - strandat 3901.153 kb on - strandat 3901.153 kb on - strandat 3901.153 kb on - strandat 3901.153 kb on - strandat 3901.334 kb on + strand, within AO353_17710at 3901.334 kb on + strand, within AO353_17710at 3901.334 kb on + strand, within AO353_17710at 3901.334 kb on + strand, within AO353_17710at 3901.335 kb on - strand, within AO353_17710at 3901.335 kb on - strand, within AO353_17710at 3901.335 kb on - strand, within AO353_17710at 3901.335 kb on - strand, within AO353_17710at 3901.335 kb on - strand, within AO353_17710at 3901.377 kb on + strand, within AO353_17710at 3901.377 kb on + strand, within AO353_17710at 3901.377 kb on + strand, within AO353_17710at 3901.378 kb on - strand, within AO353_17710at 3901.378 kb on - strand, within AO353_17710at 3901.378 kb on - strand, within AO353_17710at 3901.378 kb on - strand, within AO353_17710at 3901.475 kb on + strand, within AO353_17710at 3901.475 kb on + strand, within AO353_17710at 3901.522 kb on + strand, within AO353_17710at 3901.522 kb on + strand, within AO353_17710at 3901.523 kb on - strand, within AO353_17710at 3901.523 kb on - strand, within AO353_17710at 3901.523 kb on - strand, within AO353_17710at 3901.603 kb on - strand, within AO353_17710at 3901.617 kb on - strand, within AO353_17710at 3901.626 kb on + strand, within AO353_17710at 3901.722 kb on - strand, within AO353_17710at 3901.724 kb on + strand, within AO353_17710at 3901.725 kb on - strand, within AO353_17710at 3901.725 kb on - strand, within AO353_17710at 3901.775 kb on + strand, within AO353_17710at 3901.775 kb on + strand, within AO353_17710at 3901.775 kb on + strand, within AO353_17710at 3901.775 kb on + strand, within AO353_17710at 3901.775 kb on + strand, within AO353_17710at 3901.775 kb on + strand, within AO353_17710at 3901.776 kb on - strand, within AO353_17710at 3901.776 kb on - strand, within AO353_17710at 3901.776 kb on - strand, within AO353_17710at 3901.776 kb on - strand, within AO353_17710at 3901.776 kb on - strand, within AO353_17710at 3901.776 kb on - strand, within AO353_17710at 3901.776 kb on - strand, within AO353_17710at 3901.776 kb on - strand, within AO353_17710at 3901.944 kb on + strandat 3901.944 kb on + strandat 3901.944 kb on + strandat 3901.944 kb on + strandat 3901.944 kb on + strandat 3901.944 kb on + strandat 3901.944 kb on + strandat 3901.945 kb on - strandat 3901.945 kb on - strandat 3901.945 kb on - strandat 3901.945 kb on - strandat 3901.945 kb on - strandat 3901.945 kb on - strandat 3901.945 kb on - strandat 3901.945 kb on - strandat 3901.945 kb on - strandat 3901.948 kb on + strandat 3901.948 kb on + strandat 3901.967 kb on + strandat 3901.968 kb on - strandat 3901.968 kb on - strandat 3901.968 kb on - strandat 3902.014 kb on - strandat 3902.042 kb on - strand, within AO353_17715at 3902.051 kb on + strand, within AO353_17715at 3902.052 kb on - strand, within AO353_17715at 3902.052 kb on - strand, within AO353_17715at 3902.072 kb on + strand, within AO353_17715at 3902.072 kb on + strand, within AO353_17715at 3902.072 kb on + strand, within AO353_17715at 3902.072 kb on + strand, within AO353_17715at 3902.072 kb on + strand, within AO353_17715at 3902.072 kb on + strand, within AO353_17715at 3902.073 kb on - strand, within AO353_17715at 3902.073 kb on - strand, within AO353_17715at 3902.073 kb on - strand, within AO353_17715at 3902.073 kb on - strand, within AO353_17715at 3902.073 kb on - strand, within AO353_17715at 3902.073 kb on - strand, within AO353_17715at 3902.073 kb on - strand, within AO353_17715at 3902.084 kb on + strand, within AO353_17715at 3902.085 kb on - strand, within AO353_17715

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
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3,899,418 + AO353_17700 0.46 -1.5
3,899,466 + AO353_17700 0.49 +0.4
3,899,466 + AO353_17700 0.49 +1.1
3,899,466 + AO353_17700 0.49 -2.8
3,899,466 + AO353_17700 0.49 -1.1
3,899,466 + AO353_17700 0.49 -0.8
3,899,466 + AO353_17700 0.49 -0.5
3,899,466 + AO353_17700 0.49 +0.7
3,899,466 + AO353_17700 0.49 +0.4
3,899,466 + AO353_17700 0.49 -0.3
3,899,466 + AO353_17700 0.49 +0.1
3,899,466 + AO353_17700 0.49 -0.8
3,899,466 + AO353_17700 0.49 -0.5
3,899,466 + AO353_17700 0.49 +1.5
3,899,466 + AO353_17700 0.49 -1.6
3,899,466 + AO353_17700 0.49 +4.4
3,899,466 + AO353_17700 0.49 -0.1
3,899,467 - AO353_17700 0.50 +0.5
3,899,467 - AO353_17700 0.50 +0.1
3,899,467 - AO353_17700 0.50 -0.8
3,899,467 - AO353_17700 0.50 +0.0
3,899,467 - AO353_17700 0.50 -0.2
3,899,467 - AO353_17700 0.50 -1.5
3,899,467 - AO353_17700 0.50 +0.6
3,899,467 - AO353_17700 0.50 -1.0
3,899,467 - AO353_17700 0.50 +0.9
3,899,468 + AO353_17700 0.50 +1.3
3,899,536 - AO353_17700 0.54 -0.4
3,899,536 - AO353_17700 0.54 +0.5
3,899,536 - AO353_17700 0.54 -2.0
3,899,646 + AO353_17700 0.62 -0.5
3,899,646 + AO353_17700 0.62 +0.7
3,899,646 + AO353_17700 0.62 +0.1
3,899,646 + AO353_17700 0.62 +0.1
3,899,647 - AO353_17700 0.62 +0.1
3,899,664 + AO353_17700 0.63 +0.1
3,899,664 + AO353_17700 0.63 -0.5
3,899,664 + AO353_17700 0.63 -0.1
3,899,665 - AO353_17700 0.63 -0.2
3,899,665 - AO353_17700 0.63 -0.1
3,899,665 - AO353_17700 0.63 -1.5
3,899,721 + AO353_17700 0.67 -0.5
3,899,721 + AO353_17700 0.67 +0.1
3,899,721 + AO353_17700 0.67 -1.8
3,899,722 - AO353_17700 0.67 +0.7
3,899,722 - AO353_17700 0.67 +1.2
3,899,868 + AO353_17700 0.77 -0.8
3,899,868 + AO353_17700 0.77 -1.9
3,899,869 - AO353_17700 0.77 +0.7
3,899,869 - AO353_17700 0.77 +0.3
3,899,869 - AO353_17700 0.77 +0.5
3,899,869 - AO353_17700 0.77 -0.8
3,899,869 - AO353_17700 0.77 +1.3
3,899,869 - AO353_17700 0.77 -1.5
3,899,869 - AO353_17700 0.77 +0.1
3,899,895 + AO353_17700 0.79 -0.1
3,899,976 + AO353_17700 0.84 -0.7
3,900,174 - +1.2
3,900,289 + +1.0
3,900,306 + -1.7
3,900,306 + -1.0
3,900,306 + +0.1
3,900,313 + -1.3
3,900,313 + -1.3
3,900,313 + -0.1
3,900,313 + -0.5
3,900,313 + -0.1
3,900,313 + -0.7
3,900,314 - +0.0
3,900,314 - +1.0
3,900,314 - -0.7
3,900,314 - -1.0
3,900,314 - +2.0
3,900,314 - +0.0
3,900,329 - +0.7
3,900,342 - -1.3
3,900,367 - -0.3
3,900,367 - -1.2
3,900,398 + +0.0
3,900,398 + -0.0
3,900,399 - +0.5
3,900,466 + -1.0
3,900,466 + +0.1
3,900,467 - -0.8
3,900,467 - -0.3
3,900,480 + AO353_17705 0.10 +1.4
3,900,481 - AO353_17705 0.11 +0.7
3,900,602 - AO353_17705 0.26 +0.5
3,900,701 - AO353_17705 0.38 -0.2
3,900,738 - AO353_17705 0.43 +0.6
3,900,740 + AO353_17705 0.43 +0.2
3,900,740 + AO353_17705 0.43 +0.6
3,900,740 + AO353_17705 0.43 -1.1
3,900,740 + AO353_17705 0.43 +0.5
3,900,740 + AO353_17705 0.43 +0.7
3,900,741 - AO353_17705 0.43 +0.0
3,900,741 - AO353_17705 0.43 +0.3
3,900,755 + AO353_17705 0.45 -1.1
3,901,045 - AO353_17705 0.82 -0.3
3,901,050 + AO353_17705 0.82 -1.0
3,901,050 + AO353_17705 0.82 +1.7
3,901,050 + AO353_17705 0.82 +1.0
3,901,050 + AO353_17705 0.82 -0.3
3,901,051 - AO353_17705 0.83 -0.1
3,901,051 - AO353_17705 0.83 -0.3
3,901,152 + -1.0
3,901,152 + -0.9
3,901,152 + -0.1
3,901,152 + +0.7
3,901,152 + -0.5
3,901,153 - -0.4
3,901,153 - +0.0
3,901,153 - -1.7
3,901,153 - +0.5
3,901,153 - +0.7
3,901,153 - +0.1
3,901,153 - +1.1
3,901,153 - +0.4
3,901,334 + AO353_17710 0.17 +1.2
3,901,334 + AO353_17710 0.17 -1.0
3,901,334 + AO353_17710 0.17 -1.0
3,901,334 + AO353_17710 0.17 -0.4
3,901,335 - AO353_17710 0.17 +0.2
3,901,335 - AO353_17710 0.17 +1.3
3,901,335 - AO353_17710 0.17 +1.2
3,901,335 - AO353_17710 0.17 +0.2
3,901,335 - AO353_17710 0.17 -0.0
3,901,377 + AO353_17710 0.23 -0.5
3,901,377 + AO353_17710 0.23 +0.5
3,901,377 + AO353_17710 0.23 -1.2
3,901,378 - AO353_17710 0.23 +0.0
3,901,378 - AO353_17710 0.23 -1.0
3,901,378 - AO353_17710 0.23 +0.0
3,901,378 - AO353_17710 0.23 -0.1
3,901,475 + AO353_17710 0.36 -0.2
3,901,475 + AO353_17710 0.36 -0.2
3,901,522 + AO353_17710 0.43 -0.3
3,901,522 + AO353_17710 0.43 -0.5
3,901,523 - AO353_17710 0.43 +1.0
3,901,523 - AO353_17710 0.43 -0.9
3,901,523 - AO353_17710 0.43 +1.6
3,901,603 - AO353_17710 0.54 +1.0
3,901,617 - AO353_17710 0.56 -0.4
3,901,626 + AO353_17710 0.57 +0.7
3,901,722 - AO353_17710 0.70 -0.8
3,901,724 + AO353_17710 0.70 -0.5
3,901,725 - AO353_17710 0.70 -0.4
3,901,725 - AO353_17710 0.70 +0.5
3,901,775 + AO353_17710 0.77 -1.1
3,901,775 + AO353_17710 0.77 +0.8
3,901,775 + AO353_17710 0.77 +0.2
3,901,775 + AO353_17710 0.77 -0.1
3,901,775 + AO353_17710 0.77 +1.0
3,901,775 + AO353_17710 0.77 -2.0
3,901,776 - AO353_17710 0.77 -0.7
3,901,776 - AO353_17710 0.77 -1.3
3,901,776 - AO353_17710 0.77 -0.5
3,901,776 - AO353_17710 0.77 +0.3
3,901,776 - AO353_17710 0.77 +1.2
3,901,776 - AO353_17710 0.77 +0.6
3,901,776 - AO353_17710 0.77 +2.0
3,901,776 - AO353_17710 0.77 +1.5
3,901,944 + -0.3
3,901,944 + -0.9
3,901,944 + -0.3
3,901,944 + -0.1
3,901,944 + -0.8
3,901,944 + +0.2
3,901,944 + -1.3
3,901,945 - +0.0
3,901,945 - +1.3
3,901,945 - +0.0
3,901,945 - -0.3
3,901,945 - +0.5
3,901,945 - +3.0
3,901,945 - -1.3
3,901,945 - -1.5
3,901,945 - +0.7
3,901,948 + +1.0
3,901,948 + -0.3
3,901,967 + -0.3
3,901,968 - -0.7
3,901,968 - -1.4
3,901,968 - +0.2
3,902,014 - -0.5
3,902,042 - AO353_17715 0.11 +0.3
3,902,051 + AO353_17715 0.12 +1.6
3,902,052 - AO353_17715 0.12 -1.1
3,902,052 - AO353_17715 0.12 -1.0
3,902,072 + AO353_17715 0.15 -2.4
3,902,072 + AO353_17715 0.15 -1.4
3,902,072 + AO353_17715 0.15 +1.0
3,902,072 + AO353_17715 0.15 -0.5
3,902,072 + AO353_17715 0.15 -1.8
3,902,072 + AO353_17715 0.15 -0.5
3,902,073 - AO353_17715 0.15 +0.6
3,902,073 - AO353_17715 0.15 +2.5
3,902,073 - AO353_17715 0.15 -1.1
3,902,073 - AO353_17715 0.15 -1.7
3,902,073 - AO353_17715 0.15 +0.0
3,902,073 - AO353_17715 0.15 +0.5
3,902,073 - AO353_17715 0.15 -1.5
3,902,084 + AO353_17715 0.16 +0.0
3,902,085 - AO353_17715 0.17 +0.1

Or see this region's nucleotide sequence