Experiment: L-Aspartic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_17700 and AO353_17705 are separated by 190 nucleotides AO353_17705 and AO353_17710 are separated by 18 nucleotides AO353_17710 and AO353_17715 are separated by 21 nucleotides
AO353_17700: AO353_17700 - GntR family transcriptional regulator, at 3,898,740 to 3,900,206
_17700
AO353_17705: AO353_17705 - amino acid transporter, at 3,900,397 to 3,901,188
_17705
AO353_17710: AO353_17710 - ABC transporter permease, at 3,901,207 to 3,901,944
_17710
AO353_17715: AO353_17715 - ABC transporter permease, at 3,901,966 to 3,902,682
_17715
Position (kb)
3900
3901
3902 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 3899.418 kb on + strand, within AO353_17700 at 3899.466 kb on + strand, within AO353_17700 at 3899.466 kb on + strand, within AO353_17700 at 3899.466 kb on + strand, within AO353_17700 at 3899.466 kb on + strand, within AO353_17700 at 3899.466 kb on + strand, within AO353_17700 at 3899.466 kb on + strand, within AO353_17700 at 3899.466 kb on + strand, within AO353_17700 at 3899.466 kb on + strand, within AO353_17700 at 3899.466 kb on + strand, within AO353_17700 at 3899.466 kb on + strand, within AO353_17700 at 3899.466 kb on + strand, within AO353_17700 at 3899.466 kb on + strand, within AO353_17700 at 3899.466 kb on + strand, within AO353_17700 at 3899.466 kb on + strand, within AO353_17700 at 3899.466 kb on + strand, within AO353_17700 at 3899.466 kb on + strand, within AO353_17700 at 3899.467 kb on - strand, within AO353_17700 at 3899.467 kb on - strand, within AO353_17700 at 3899.467 kb on - strand, within AO353_17700 at 3899.467 kb on - strand, within AO353_17700 at 3899.467 kb on - strand, within AO353_17700 at 3899.467 kb on - strand, within AO353_17700 at 3899.467 kb on - strand, within AO353_17700 at 3899.467 kb on - strand, within AO353_17700 at 3899.467 kb on - strand, within AO353_17700 at 3899.468 kb on + strand, within AO353_17700 at 3899.536 kb on - strand, within AO353_17700 at 3899.536 kb on - strand, within AO353_17700 at 3899.536 kb on - strand, within AO353_17700 at 3899.646 kb on + strand, within AO353_17700 at 3899.646 kb on + strand, within AO353_17700 at 3899.646 kb on + strand, within AO353_17700 at 3899.646 kb on + strand, within AO353_17700 at 3899.647 kb on - strand, within AO353_17700 at 3899.664 kb on + strand, within AO353_17700 at 3899.664 kb on + strand, within AO353_17700 at 3899.664 kb on + strand, within AO353_17700 at 3899.665 kb on - strand, within AO353_17700 at 3899.665 kb on - strand, within AO353_17700 at 3899.665 kb on - strand, within AO353_17700 at 3899.721 kb on + strand, within AO353_17700 at 3899.721 kb on + strand, within AO353_17700 at 3899.721 kb on + strand, within AO353_17700 at 3899.722 kb on - strand, within AO353_17700 at 3899.722 kb on - strand, within AO353_17700 at 3899.868 kb on + strand, within AO353_17700 at 3899.868 kb on + strand, within AO353_17700 at 3899.869 kb on - strand, within AO353_17700 at 3899.869 kb on - strand, within AO353_17700 at 3899.869 kb on - strand, within AO353_17700 at 3899.869 kb on - strand, within AO353_17700 at 3899.869 kb on - strand, within AO353_17700 at 3899.869 kb on - strand, within AO353_17700 at 3899.869 kb on - strand, within AO353_17700 at 3899.895 kb on + strand, within AO353_17700 at 3899.976 kb on + strand, within AO353_17700 at 3900.174 kb on - strand at 3900.289 kb on + strand at 3900.306 kb on + strand at 3900.306 kb on + strand at 3900.306 kb on + strand at 3900.313 kb on + strand at 3900.313 kb on + strand at 3900.313 kb on + strand at 3900.313 kb on + strand at 3900.313 kb on + strand at 3900.313 kb on + strand at 3900.314 kb on - strand at 3900.314 kb on - strand at 3900.314 kb on - strand at 3900.314 kb on - strand at 3900.314 kb on - strand at 3900.314 kb on - strand at 3900.329 kb on - strand at 3900.342 kb on - strand at 3900.367 kb on - strand at 3900.367 kb on - strand at 3900.398 kb on + strand at 3900.398 kb on + strand at 3900.399 kb on - strand at 3900.466 kb on + strand at 3900.466 kb on + strand at 3900.467 kb on - strand at 3900.467 kb on - strand at 3900.480 kb on + strand, within AO353_17705 at 3900.481 kb on - strand, within AO353_17705 at 3900.602 kb on - strand, within AO353_17705 at 3900.701 kb on - strand, within AO353_17705 at 3900.738 kb on - strand, within AO353_17705 at 3900.740 kb on + strand, within AO353_17705 at 3900.740 kb on + strand, within AO353_17705 at 3900.740 kb on + strand, within AO353_17705 at 3900.740 kb on + strand, within AO353_17705 at 3900.740 kb on + strand, within AO353_17705 at 3900.741 kb on - strand, within AO353_17705 at 3900.741 kb on - strand, within AO353_17705 at 3900.755 kb on + strand, within AO353_17705 at 3901.045 kb on - strand, within AO353_17705 at 3901.050 kb on + strand, within AO353_17705 at 3901.050 kb on + strand, within AO353_17705 at 3901.050 kb on + strand, within AO353_17705 at 3901.050 kb on + strand, within AO353_17705 at 3901.051 kb on - strand, within AO353_17705 at 3901.051 kb on - strand, within AO353_17705 at 3901.152 kb on + strand at 3901.152 kb on + strand at 3901.152 kb on + strand at 3901.152 kb on + strand at 3901.152 kb on + strand at 3901.153 kb on - strand at 3901.153 kb on - strand at 3901.153 kb on - strand at 3901.153 kb on - strand at 3901.153 kb on - strand at 3901.153 kb on - strand at 3901.153 kb on - strand at 3901.153 kb on - strand at 3901.334 kb on + strand, within AO353_17710 at 3901.334 kb on + strand, within AO353_17710 at 3901.334 kb on + strand, within AO353_17710 at 3901.334 kb on + strand, within AO353_17710 at 3901.335 kb on - strand, within AO353_17710 at 3901.335 kb on - strand, within AO353_17710 at 3901.335 kb on - strand, within AO353_17710 at 3901.335 kb on - strand, within AO353_17710 at 3901.335 kb on - strand, within AO353_17710 at 3901.377 kb on + strand, within AO353_17710 at 3901.377 kb on + strand, within AO353_17710 at 3901.377 kb on + strand, within AO353_17710 at 3901.378 kb on - strand, within AO353_17710 at 3901.378 kb on - strand, within AO353_17710 at 3901.378 kb on - strand, within AO353_17710 at 3901.378 kb on - strand, within AO353_17710 at 3901.475 kb on + strand, within AO353_17710 at 3901.475 kb on + strand, within AO353_17710 at 3901.522 kb on + strand, within AO353_17710 at 3901.522 kb on + strand, within AO353_17710 at 3901.523 kb on - strand, within AO353_17710 at 3901.523 kb on - strand, within AO353_17710 at 3901.523 kb on - strand, within AO353_17710 at 3901.603 kb on - strand, within AO353_17710 at 3901.617 kb on - strand, within AO353_17710 at 3901.626 kb on + strand, within AO353_17710 at 3901.722 kb on - strand, within AO353_17710 at 3901.724 kb on + strand, within AO353_17710 at 3901.725 kb on - strand, within AO353_17710 at 3901.725 kb on - strand, within AO353_17710 at 3901.775 kb on + strand, within AO353_17710 at 3901.775 kb on + strand, within AO353_17710 at 3901.775 kb on + strand, within AO353_17710 at 3901.775 kb on + strand, within AO353_17710 at 3901.775 kb on + strand, within AO353_17710 at 3901.775 kb on + strand, within AO353_17710 at 3901.776 kb on - strand, within AO353_17710 at 3901.776 kb on - strand, within AO353_17710 at 3901.776 kb on - strand, within AO353_17710 at 3901.776 kb on - strand, within AO353_17710 at 3901.776 kb on - strand, within AO353_17710 at 3901.776 kb on - strand, within AO353_17710 at 3901.776 kb on - strand, within AO353_17710 at 3901.776 kb on - strand, within AO353_17710 at 3901.944 kb on + strand at 3901.944 kb on + strand at 3901.944 kb on + strand at 3901.944 kb on + strand at 3901.944 kb on + strand at 3901.944 kb on + strand at 3901.944 kb on + strand at 3901.945 kb on - strand at 3901.945 kb on - strand at 3901.945 kb on - strand at 3901.945 kb on - strand at 3901.945 kb on - strand at 3901.945 kb on - strand at 3901.945 kb on - strand at 3901.945 kb on - strand at 3901.945 kb on - strand at 3901.948 kb on + strand at 3901.948 kb on + strand at 3901.967 kb on + strand at 3901.968 kb on - strand at 3901.968 kb on - strand at 3901.968 kb on - strand at 3902.014 kb on - strand at 3902.042 kb on - strand, within AO353_17715 at 3902.051 kb on + strand, within AO353_17715 at 3902.052 kb on - strand, within AO353_17715 at 3902.052 kb on - strand, within AO353_17715 at 3902.072 kb on + strand, within AO353_17715 at 3902.072 kb on + strand, within AO353_17715 at 3902.072 kb on + strand, within AO353_17715 at 3902.072 kb on + strand, within AO353_17715 at 3902.072 kb on + strand, within AO353_17715 at 3902.072 kb on + strand, within AO353_17715 at 3902.073 kb on - strand, within AO353_17715 at 3902.073 kb on - strand, within AO353_17715 at 3902.073 kb on - strand, within AO353_17715 at 3902.073 kb on - strand, within AO353_17715 at 3902.073 kb on - strand, within AO353_17715 at 3902.073 kb on - strand, within AO353_17715 at 3902.073 kb on - strand, within AO353_17715 at 3902.084 kb on + strand, within AO353_17715 at 3902.085 kb on - strand, within AO353_17715
Per-strain Table
Position Strand Gene LocusTag Fraction L-Aspartic Acid (C) remove 3,899,418 + AO353_17700 0.46 -1.5 3,899,466 + AO353_17700 0.49 +0.4 3,899,466 + AO353_17700 0.49 +1.1 3,899,466 + AO353_17700 0.49 -2.8 3,899,466 + AO353_17700 0.49 -1.1 3,899,466 + AO353_17700 0.49 -0.8 3,899,466 + AO353_17700 0.49 -0.5 3,899,466 + AO353_17700 0.49 +0.7 3,899,466 + AO353_17700 0.49 +0.4 3,899,466 + AO353_17700 0.49 -0.3 3,899,466 + AO353_17700 0.49 +0.1 3,899,466 + AO353_17700 0.49 -0.8 3,899,466 + AO353_17700 0.49 -0.5 3,899,466 + AO353_17700 0.49 +1.5 3,899,466 + AO353_17700 0.49 -1.6 3,899,466 + AO353_17700 0.49 +4.4 3,899,466 + AO353_17700 0.49 -0.1 3,899,467 - AO353_17700 0.50 +0.5 3,899,467 - AO353_17700 0.50 +0.1 3,899,467 - AO353_17700 0.50 -0.8 3,899,467 - AO353_17700 0.50 +0.0 3,899,467 - AO353_17700 0.50 -0.2 3,899,467 - AO353_17700 0.50 -1.5 3,899,467 - AO353_17700 0.50 +0.6 3,899,467 - AO353_17700 0.50 -1.0 3,899,467 - AO353_17700 0.50 +0.9 3,899,468 + AO353_17700 0.50 +1.3 3,899,536 - AO353_17700 0.54 -0.4 3,899,536 - AO353_17700 0.54 +0.5 3,899,536 - AO353_17700 0.54 -2.0 3,899,646 + AO353_17700 0.62 -0.5 3,899,646 + AO353_17700 0.62 +0.7 3,899,646 + AO353_17700 0.62 +0.1 3,899,646 + AO353_17700 0.62 +0.1 3,899,647 - AO353_17700 0.62 +0.1 3,899,664 + AO353_17700 0.63 +0.1 3,899,664 + AO353_17700 0.63 -0.5 3,899,664 + AO353_17700 0.63 -0.1 3,899,665 - AO353_17700 0.63 -0.2 3,899,665 - AO353_17700 0.63 -0.1 3,899,665 - AO353_17700 0.63 -1.5 3,899,721 + AO353_17700 0.67 -0.5 3,899,721 + AO353_17700 0.67 +0.1 3,899,721 + AO353_17700 0.67 -1.8 3,899,722 - AO353_17700 0.67 +0.7 3,899,722 - AO353_17700 0.67 +1.2 3,899,868 + AO353_17700 0.77 -0.8 3,899,868 + AO353_17700 0.77 -1.9 3,899,869 - AO353_17700 0.77 +0.7 3,899,869 - AO353_17700 0.77 +0.3 3,899,869 - AO353_17700 0.77 +0.5 3,899,869 - AO353_17700 0.77 -0.8 3,899,869 - AO353_17700 0.77 +1.3 3,899,869 - AO353_17700 0.77 -1.5 3,899,869 - AO353_17700 0.77 +0.1 3,899,895 + AO353_17700 0.79 -0.1 3,899,976 + AO353_17700 0.84 -0.7 3,900,174 - +1.2 3,900,289 + +1.0 3,900,306 + -1.7 3,900,306 + -1.0 3,900,306 + +0.1 3,900,313 + -1.3 3,900,313 + -1.3 3,900,313 + -0.1 3,900,313 + -0.5 3,900,313 + -0.1 3,900,313 + -0.7 3,900,314 - +0.0 3,900,314 - +1.0 3,900,314 - -0.7 3,900,314 - -1.0 3,900,314 - +2.0 3,900,314 - +0.0 3,900,329 - +0.7 3,900,342 - -1.3 3,900,367 - -0.3 3,900,367 - -1.2 3,900,398 + +0.0 3,900,398 + -0.0 3,900,399 - +0.5 3,900,466 + -1.0 3,900,466 + +0.1 3,900,467 - -0.8 3,900,467 - -0.3 3,900,480 + AO353_17705 0.10 +1.4 3,900,481 - AO353_17705 0.11 +0.7 3,900,602 - AO353_17705 0.26 +0.5 3,900,701 - AO353_17705 0.38 -0.2 3,900,738 - AO353_17705 0.43 +0.6 3,900,740 + AO353_17705 0.43 +0.2 3,900,740 + AO353_17705 0.43 +0.6 3,900,740 + AO353_17705 0.43 -1.1 3,900,740 + AO353_17705 0.43 +0.5 3,900,740 + AO353_17705 0.43 +0.7 3,900,741 - AO353_17705 0.43 +0.0 3,900,741 - AO353_17705 0.43 +0.3 3,900,755 + AO353_17705 0.45 -1.1 3,901,045 - AO353_17705 0.82 -0.3 3,901,050 + AO353_17705 0.82 -1.0 3,901,050 + AO353_17705 0.82 +1.7 3,901,050 + AO353_17705 0.82 +1.0 3,901,050 + AO353_17705 0.82 -0.3 3,901,051 - AO353_17705 0.83 -0.1 3,901,051 - AO353_17705 0.83 -0.3 3,901,152 + -1.0 3,901,152 + -0.9 3,901,152 + -0.1 3,901,152 + +0.7 3,901,152 + -0.5 3,901,153 - -0.4 3,901,153 - +0.0 3,901,153 - -1.7 3,901,153 - +0.5 3,901,153 - +0.7 3,901,153 - +0.1 3,901,153 - +1.1 3,901,153 - +0.4 3,901,334 + AO353_17710 0.17 +1.2 3,901,334 + AO353_17710 0.17 -1.0 3,901,334 + AO353_17710 0.17 -1.0 3,901,334 + AO353_17710 0.17 -0.4 3,901,335 - AO353_17710 0.17 +0.2 3,901,335 - AO353_17710 0.17 +1.3 3,901,335 - AO353_17710 0.17 +1.2 3,901,335 - AO353_17710 0.17 +0.2 3,901,335 - AO353_17710 0.17 -0.0 3,901,377 + AO353_17710 0.23 -0.5 3,901,377 + AO353_17710 0.23 +0.5 3,901,377 + AO353_17710 0.23 -1.2 3,901,378 - AO353_17710 0.23 +0.0 3,901,378 - AO353_17710 0.23 -1.0 3,901,378 - AO353_17710 0.23 +0.0 3,901,378 - AO353_17710 0.23 -0.1 3,901,475 + AO353_17710 0.36 -0.2 3,901,475 + AO353_17710 0.36 -0.2 3,901,522 + AO353_17710 0.43 -0.3 3,901,522 + AO353_17710 0.43 -0.5 3,901,523 - AO353_17710 0.43 +1.0 3,901,523 - AO353_17710 0.43 -0.9 3,901,523 - AO353_17710 0.43 +1.6 3,901,603 - AO353_17710 0.54 +1.0 3,901,617 - AO353_17710 0.56 -0.4 3,901,626 + AO353_17710 0.57 +0.7 3,901,722 - AO353_17710 0.70 -0.8 3,901,724 + AO353_17710 0.70 -0.5 3,901,725 - AO353_17710 0.70 -0.4 3,901,725 - AO353_17710 0.70 +0.5 3,901,775 + AO353_17710 0.77 -1.1 3,901,775 + AO353_17710 0.77 +0.8 3,901,775 + AO353_17710 0.77 +0.2 3,901,775 + AO353_17710 0.77 -0.1 3,901,775 + AO353_17710 0.77 +1.0 3,901,775 + AO353_17710 0.77 -2.0 3,901,776 - AO353_17710 0.77 -0.7 3,901,776 - AO353_17710 0.77 -1.3 3,901,776 - AO353_17710 0.77 -0.5 3,901,776 - AO353_17710 0.77 +0.3 3,901,776 - AO353_17710 0.77 +1.2 3,901,776 - AO353_17710 0.77 +0.6 3,901,776 - AO353_17710 0.77 +2.0 3,901,776 - AO353_17710 0.77 +1.5 3,901,944 + -0.3 3,901,944 + -0.9 3,901,944 + -0.3 3,901,944 + -0.1 3,901,944 + -0.8 3,901,944 + +0.2 3,901,944 + -1.3 3,901,945 - +0.0 3,901,945 - +1.3 3,901,945 - +0.0 3,901,945 - -0.3 3,901,945 - +0.5 3,901,945 - +3.0 3,901,945 - -1.3 3,901,945 - -1.5 3,901,945 - +0.7 3,901,948 + +1.0 3,901,948 + -0.3 3,901,967 + -0.3 3,901,968 - -0.7 3,901,968 - -1.4 3,901,968 - +0.2 3,902,014 - -0.5 3,902,042 - AO353_17715 0.11 +0.3 3,902,051 + AO353_17715 0.12 +1.6 3,902,052 - AO353_17715 0.12 -1.1 3,902,052 - AO353_17715 0.12 -1.0 3,902,072 + AO353_17715 0.15 -2.4 3,902,072 + AO353_17715 0.15 -1.4 3,902,072 + AO353_17715 0.15 +1.0 3,902,072 + AO353_17715 0.15 -0.5 3,902,072 + AO353_17715 0.15 -1.8 3,902,072 + AO353_17715 0.15 -0.5 3,902,073 - AO353_17715 0.15 +0.6 3,902,073 - AO353_17715 0.15 +2.5 3,902,073 - AO353_17715 0.15 -1.1 3,902,073 - AO353_17715 0.15 -1.7 3,902,073 - AO353_17715 0.15 +0.0 3,902,073 - AO353_17715 0.15 +0.5 3,902,073 - AO353_17715 0.15 -1.5 3,902,084 + AO353_17715 0.16 +0.0 3,902,085 - AO353_17715 0.17 +0.1
Or see this region's nucleotide sequence