Experiment: L-Aspartic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_17080 and AO353_17085 are separated by 139 nucleotides AO353_17085 and AO353_17090 overlap by 4 nucleotides AO353_17090 and AO353_17095 overlap by 4 nucleotides
AO353_17080: AO353_17080 - LysR family transcriptional regulator, at 3,775,842 to 3,776,750
_17080
AO353_17085: AO353_17085 - hypothetical protein, at 3,776,890 to 3,777,402
_17085
AO353_17090: AO353_17090 - hypothetical protein, at 3,777,399 to 3,778,172
_17090
AO353_17095: AO353_17095 - hypothetical protein, at 3,778,169 to 3,779,062
_17095
Position (kb)
3776
3777
3778 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3775.925 kb on + strand at 3775.925 kb on + strand at 3775.925 kb on + strand at 3775.925 kb on + strand at 3775.925 kb on + strand at 3775.925 kb on + strand at 3775.925 kb on + strand at 3775.925 kb on + strand at 3775.925 kb on + strand at 3775.925 kb on + strand at 3775.926 kb on - strand at 3775.926 kb on - strand at 3775.926 kb on - strand at 3775.926 kb on - strand at 3775.926 kb on - strand at 3775.926 kb on - strand at 3775.978 kb on + strand, within AO353_17080 at 3775.979 kb on - strand, within AO353_17080 at 3776.068 kb on + strand, within AO353_17080 at 3776.068 kb on + strand, within AO353_17080 at 3776.069 kb on - strand, within AO353_17080 at 3776.194 kb on - strand, within AO353_17080 at 3776.194 kb on - strand, within AO353_17080 at 3776.352 kb on + strand, within AO353_17080 at 3776.352 kb on + strand, within AO353_17080 at 3776.352 kb on + strand, within AO353_17080 at 3776.352 kb on + strand, within AO353_17080 at 3776.352 kb on + strand, within AO353_17080 at 3776.352 kb on + strand, within AO353_17080 at 3776.353 kb on - strand, within AO353_17080 at 3776.353 kb on - strand, within AO353_17080 at 3776.353 kb on - strand, within AO353_17080 at 3776.425 kb on - strand, within AO353_17080 at 3776.425 kb on - strand, within AO353_17080 at 3776.448 kb on + strand, within AO353_17080 at 3776.448 kb on + strand, within AO353_17080 at 3776.448 kb on + strand, within AO353_17080 at 3776.448 kb on + strand, within AO353_17080 at 3776.448 kb on + strand, within AO353_17080 at 3776.448 kb on + strand, within AO353_17080 at 3776.449 kb on - strand, within AO353_17080 at 3776.449 kb on - strand, within AO353_17080 at 3776.449 kb on - strand, within AO353_17080 at 3776.449 kb on - strand, within AO353_17080 at 3776.449 kb on - strand, within AO353_17080 at 3776.508 kb on + strand, within AO353_17080 at 3776.508 kb on + strand, within AO353_17080 at 3776.508 kb on + strand, within AO353_17080 at 3776.508 kb on + strand, within AO353_17080 at 3776.508 kb on + strand, within AO353_17080 at 3776.508 kb on + strand, within AO353_17080 at 3776.508 kb on + strand, within AO353_17080 at 3776.509 kb on - strand, within AO353_17080 at 3776.509 kb on - strand, within AO353_17080 at 3776.509 kb on - strand, within AO353_17080 at 3776.509 kb on - strand, within AO353_17080 at 3776.565 kb on + strand, within AO353_17080 at 3776.565 kb on + strand, within AO353_17080 at 3776.565 kb on + strand, within AO353_17080 at 3776.565 kb on + strand, within AO353_17080 at 3776.565 kb on + strand, within AO353_17080 at 3776.565 kb on + strand, within AO353_17080 at 3776.565 kb on + strand, within AO353_17080 at 3776.565 kb on + strand, within AO353_17080 at 3776.566 kb on - strand, within AO353_17080 at 3776.566 kb on - strand, within AO353_17080 at 3776.566 kb on - strand, within AO353_17080 at 3776.566 kb on - strand, within AO353_17080 at 3776.566 kb on - strand, within AO353_17080 at 3776.566 kb on - strand, within AO353_17080 at 3776.566 kb on - strand, within AO353_17080 at 3776.566 kb on - strand, within AO353_17080 at 3776.566 kb on - strand, within AO353_17080 at 3776.566 kb on - strand, within AO353_17080 at 3776.619 kb on + strand, within AO353_17080 at 3776.643 kb on + strand, within AO353_17080 at 3776.643 kb on + strand, within AO353_17080 at 3776.643 kb on + strand, within AO353_17080 at 3776.643 kb on + strand, within AO353_17080 at 3776.643 kb on + strand, within AO353_17080 at 3776.643 kb on + strand, within AO353_17080 at 3776.643 kb on + strand, within AO353_17080 at 3776.643 kb on + strand, within AO353_17080 at 3776.644 kb on - strand, within AO353_17080 at 3776.644 kb on - strand, within AO353_17080 at 3776.644 kb on - strand, within AO353_17080 at 3776.644 kb on - strand, within AO353_17080 at 3776.659 kb on - strand, within AO353_17080 at 3776.690 kb on - strand at 3776.700 kb on + strand at 3776.700 kb on + strand at 3776.701 kb on - strand at 3776.701 kb on - strand at 3776.701 kb on - strand at 3776.748 kb on + strand at 3776.749 kb on - strand at 3776.815 kb on + strand at 3776.815 kb on + strand at 3776.816 kb on - strand at 3776.816 kb on - strand at 3776.842 kb on - strand at 3776.842 kb on - strand at 3776.842 kb on - strand at 3776.842 kb on - strand at 3776.842 kb on - strand at 3776.842 kb on - strand at 3776.881 kb on + strand at 3776.891 kb on + strand at 3776.891 kb on + strand at 3776.906 kb on + strand at 3776.906 kb on + strand at 3776.907 kb on - strand at 3776.907 kb on - strand at 3776.964 kb on - strand, within AO353_17085 at 3777.162 kb on - strand, within AO353_17085 at 3777.162 kb on - strand, within AO353_17085 at 3777.162 kb on - strand, within AO353_17085 at 3777.162 kb on - strand, within AO353_17085 at 3777.162 kb on - strand, within AO353_17085 at 3777.629 kb on - strand, within AO353_17090 at 3777.651 kb on + strand, within AO353_17090 at 3777.651 kb on + strand, within AO353_17090 at 3777.651 kb on + strand, within AO353_17090 at 3777.652 kb on - strand, within AO353_17090 at 3777.675 kb on + strand, within AO353_17090 at 3777.735 kb on + strand, within AO353_17090 at 3777.735 kb on + strand, within AO353_17090 at 3777.735 kb on + strand, within AO353_17090 at 3777.735 kb on + strand, within AO353_17090 at 3777.735 kb on + strand, within AO353_17090 at 3777.735 kb on + strand, within AO353_17090 at 3777.735 kb on + strand, within AO353_17090 at 3777.735 kb on + strand, within AO353_17090 at 3777.735 kb on + strand, within AO353_17090 at 3777.736 kb on - strand, within AO353_17090 at 3777.736 kb on - strand, within AO353_17090 at 3777.736 kb on - strand, within AO353_17090 at 3777.736 kb on - strand, within AO353_17090 at 3777.736 kb on - strand, within AO353_17090 at 3777.736 kb on - strand, within AO353_17090 at 3777.736 kb on - strand, within AO353_17090 at 3777.814 kb on + strand, within AO353_17090 at 3777.859 kb on + strand, within AO353_17090 at 3777.860 kb on - strand, within AO353_17090 at 3777.959 kb on - strand, within AO353_17090 at 3777.959 kb on - strand, within AO353_17090 at 3778.063 kb on + strand, within AO353_17090 at 3778.156 kb on + strand at 3778.156 kb on + strand at 3778.156 kb on + strand at 3778.156 kb on + strand at 3778.156 kb on + strand at 3778.156 kb on + strand at 3778.156 kb on + strand at 3778.156 kb on + strand at 3778.156 kb on + strand at 3778.156 kb on + strand at 3778.157 kb on - strand at 3778.157 kb on - strand at 3778.157 kb on - strand at 3778.157 kb on - strand at 3778.157 kb on - strand at 3778.167 kb on - strand at 3778.167 kb on - strand at 3778.189 kb on - strand at 3778.189 kb on - strand at 3778.189 kb on - strand at 3778.304 kb on - strand, within AO353_17095 at 3778.304 kb on - strand, within AO353_17095 at 3778.304 kb on - strand, within AO353_17095 at 3778.304 kb on - strand, within AO353_17095 at 3778.304 kb on - strand, within AO353_17095 at 3778.304 kb on - strand, within AO353_17095 at 3778.304 kb on - strand, within AO353_17095 at 3778.305 kb on + strand, within AO353_17095 at 3778.305 kb on + strand, within AO353_17095 at 3778.305 kb on + strand, within AO353_17095 at 3778.305 kb on + strand, within AO353_17095 at 3778.305 kb on + strand, within AO353_17095 at 3778.305 kb on + strand, within AO353_17095 at 3778.305 kb on + strand, within AO353_17095 at 3778.305 kb on + strand, within AO353_17095 at 3778.305 kb on + strand, within AO353_17095 at 3778.306 kb on - strand, within AO353_17095 at 3778.306 kb on - strand, within AO353_17095 at 3778.306 kb on - strand, within AO353_17095 at 3778.306 kb on - strand, within AO353_17095
Per-strain Table
Position Strand Gene LocusTag Fraction L-Aspartic Acid (C) remove 3,775,925 + -0.0 3,775,925 + +0.9 3,775,925 + +0.7 3,775,925 + +0.5 3,775,925 + -0.7 3,775,925 + +0.4 3,775,925 + +0.3 3,775,925 + +0.1 3,775,925 + -2.1 3,775,925 + +0.0 3,775,926 - +0.2 3,775,926 - +0.3 3,775,926 - -1.8 3,775,926 - -0.7 3,775,926 - -0.6 3,775,926 - -1.0 3,775,978 + AO353_17080 0.15 +0.1 3,775,979 - AO353_17080 0.15 -0.7 3,776,068 + AO353_17080 0.25 +0.1 3,776,068 + AO353_17080 0.25 +1.0 3,776,069 - AO353_17080 0.25 -0.0 3,776,194 - AO353_17080 0.39 +0.1 3,776,194 - AO353_17080 0.39 +1.1 3,776,352 + AO353_17080 0.56 -0.1 3,776,352 + AO353_17080 0.56 +0.5 3,776,352 + AO353_17080 0.56 -1.5 3,776,352 + AO353_17080 0.56 -1.6 3,776,352 + AO353_17080 0.56 +0.4 3,776,352 + AO353_17080 0.56 +1.1 3,776,353 - AO353_17080 0.56 -0.4 3,776,353 - AO353_17080 0.56 -2.0 3,776,353 - AO353_17080 0.56 -0.4 3,776,425 - AO353_17080 0.64 -1.2 3,776,425 - AO353_17080 0.64 -0.9 3,776,448 + AO353_17080 0.67 +0.1 3,776,448 + AO353_17080 0.67 +0.7 3,776,448 + AO353_17080 0.67 -0.5 3,776,448 + AO353_17080 0.67 +0.1 3,776,448 + AO353_17080 0.67 -0.4 3,776,448 + AO353_17080 0.67 -0.2 3,776,449 - AO353_17080 0.67 -1.7 3,776,449 - AO353_17080 0.67 +0.4 3,776,449 - AO353_17080 0.67 +1.8 3,776,449 - AO353_17080 0.67 +0.3 3,776,449 - AO353_17080 0.67 -0.2 3,776,508 + AO353_17080 0.73 -0.6 3,776,508 + AO353_17080 0.73 -1.9 3,776,508 + AO353_17080 0.73 -0.3 3,776,508 + AO353_17080 0.73 -0.6 3,776,508 + AO353_17080 0.73 +1.1 3,776,508 + AO353_17080 0.73 -0.8 3,776,508 + AO353_17080 0.73 +1.1 3,776,509 - AO353_17080 0.73 +0.4 3,776,509 - AO353_17080 0.73 +0.3 3,776,509 - AO353_17080 0.73 -2.1 3,776,509 - AO353_17080 0.73 -0.3 3,776,565 + AO353_17080 0.80 -0.6 3,776,565 + AO353_17080 0.80 +0.4 3,776,565 + AO353_17080 0.80 -1.7 3,776,565 + AO353_17080 0.80 +1.4 3,776,565 + AO353_17080 0.80 -1.7 3,776,565 + AO353_17080 0.80 -0.5 3,776,565 + AO353_17080 0.80 +0.9 3,776,565 + AO353_17080 0.80 +1.2 3,776,566 - AO353_17080 0.80 -0.5 3,776,566 - AO353_17080 0.80 -0.0 3,776,566 - AO353_17080 0.80 -1.2 3,776,566 - AO353_17080 0.80 +1.1 3,776,566 - AO353_17080 0.80 -1.5 3,776,566 - AO353_17080 0.80 +1.1 3,776,566 - AO353_17080 0.80 +0.1 3,776,566 - AO353_17080 0.80 -1.0 3,776,566 - AO353_17080 0.80 -0.3 3,776,566 - AO353_17080 0.80 -1.1 3,776,619 + AO353_17080 0.85 -1.0 3,776,643 + AO353_17080 0.88 -0.9 3,776,643 + AO353_17080 0.88 -0.5 3,776,643 + AO353_17080 0.88 +0.1 3,776,643 + AO353_17080 0.88 +0.2 3,776,643 + AO353_17080 0.88 -1.4 3,776,643 + AO353_17080 0.88 +0.3 3,776,643 + AO353_17080 0.88 +0.1 3,776,643 + AO353_17080 0.88 -1.3 3,776,644 - AO353_17080 0.88 -2.9 3,776,644 - AO353_17080 0.88 +0.1 3,776,644 - AO353_17080 0.88 +1.3 3,776,644 - AO353_17080 0.88 +1.0 3,776,659 - AO353_17080 0.90 -1.8 3,776,690 - -1.0 3,776,700 + +0.5 3,776,700 + -0.7 3,776,701 - +0.7 3,776,701 - -0.2 3,776,701 - -0.5 3,776,748 + -1.5 3,776,749 - -0.9 3,776,815 + -0.5 3,776,815 + -0.0 3,776,816 - -2.3 3,776,816 - +1.1 3,776,842 - +1.8 3,776,842 - -0.9 3,776,842 - -2.2 3,776,842 - -1.9 3,776,842 - -1.7 3,776,842 - -1.5 3,776,881 + +0.5 3,776,891 + +1.7 3,776,891 + -0.6 3,776,906 + +1.0 3,776,906 + -1.5 3,776,907 - +1.3 3,776,907 - -2.4 3,776,964 - AO353_17085 0.14 +1.1 3,777,162 - AO353_17085 0.53 +1.9 3,777,162 - AO353_17085 0.53 -1.0 3,777,162 - AO353_17085 0.53 -0.7 3,777,162 - AO353_17085 0.53 +0.5 3,777,162 - AO353_17085 0.53 -0.5 3,777,629 - AO353_17090 0.30 -0.5 3,777,651 + AO353_17090 0.33 +0.0 3,777,651 + AO353_17090 0.33 -0.2 3,777,651 + AO353_17090 0.33 +2.1 3,777,652 - AO353_17090 0.33 +0.1 3,777,675 + AO353_17090 0.36 +1.5 3,777,735 + AO353_17090 0.43 +1.1 3,777,735 + AO353_17090 0.43 -1.2 3,777,735 + AO353_17090 0.43 +1.7 3,777,735 + AO353_17090 0.43 -0.0 3,777,735 + AO353_17090 0.43 +0.9 3,777,735 + AO353_17090 0.43 -0.7 3,777,735 + AO353_17090 0.43 +0.1 3,777,735 + AO353_17090 0.43 +0.1 3,777,735 + AO353_17090 0.43 -2.2 3,777,736 - AO353_17090 0.44 -0.2 3,777,736 - AO353_17090 0.44 +0.2 3,777,736 - AO353_17090 0.44 -0.1 3,777,736 - AO353_17090 0.44 +0.2 3,777,736 - AO353_17090 0.44 +0.3 3,777,736 - AO353_17090 0.44 +0.7 3,777,736 - AO353_17090 0.44 -0.7 3,777,814 + AO353_17090 0.54 +1.0 3,777,859 + AO353_17090 0.59 -0.0 3,777,860 - AO353_17090 0.60 +0.1 3,777,959 - AO353_17090 0.72 +0.1 3,777,959 - AO353_17090 0.72 -1.0 3,778,063 + AO353_17090 0.86 -0.7 3,778,156 + +0.5 3,778,156 + -1.0 3,778,156 + +0.5 3,778,156 + +1.5 3,778,156 + -0.3 3,778,156 + -0.9 3,778,156 + -0.2 3,778,156 + -0.0 3,778,156 + -0.8 3,778,156 + +0.0 3,778,157 - +0.6 3,778,157 - -0.7 3,778,157 - -0.9 3,778,157 - +0.6 3,778,157 - -0.9 3,778,167 - -0.2 3,778,167 - -0.3 3,778,189 - +0.1 3,778,189 - -0.5 3,778,189 - -0.6 3,778,304 - AO353_17095 0.15 -0.5 3,778,304 - AO353_17095 0.15 -0.1 3,778,304 - AO353_17095 0.15 +1.8 3,778,304 - AO353_17095 0.15 -0.7 3,778,304 - AO353_17095 0.15 -0.7 3,778,304 - AO353_17095 0.15 +1.1 3,778,304 - AO353_17095 0.15 -0.3 3,778,305 + AO353_17095 0.15 -1.6 3,778,305 + AO353_17095 0.15 -0.2 3,778,305 + AO353_17095 0.15 -1.5 3,778,305 + AO353_17095 0.15 +0.2 3,778,305 + AO353_17095 0.15 +0.4 3,778,305 + AO353_17095 0.15 +0.2 3,778,305 + AO353_17095 0.15 -0.1 3,778,305 + AO353_17095 0.15 +0.5 3,778,305 + AO353_17095 0.15 -0.7 3,778,306 - AO353_17095 0.15 -0.3 3,778,306 - AO353_17095 0.15 -1.2 3,778,306 - AO353_17095 0.15 -0.8 3,778,306 - AO353_17095 0.15 +0.2
Or see this region's nucleotide sequence