Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_17085

Experiment: L-Aspartic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_17080 and AO353_17085 are separated by 139 nucleotidesAO353_17085 and AO353_17090 overlap by 4 nucleotidesAO353_17090 and AO353_17095 overlap by 4 nucleotides AO353_17080: AO353_17080 - LysR family transcriptional regulator, at 3,775,842 to 3,776,750 _17080 AO353_17085: AO353_17085 - hypothetical protein, at 3,776,890 to 3,777,402 _17085 AO353_17090: AO353_17090 - hypothetical protein, at 3,777,399 to 3,778,172 _17090 AO353_17095: AO353_17095 - hypothetical protein, at 3,778,169 to 3,779,062 _17095 Position (kb) 3776 3777 3778Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3775.925 kb on + strandat 3775.925 kb on + strandat 3775.925 kb on + strandat 3775.925 kb on + strandat 3775.925 kb on + strandat 3775.925 kb on + strandat 3775.925 kb on + strandat 3775.925 kb on + strandat 3775.925 kb on + strandat 3775.925 kb on + strandat 3775.926 kb on - strandat 3775.926 kb on - strandat 3775.926 kb on - strandat 3775.926 kb on - strandat 3775.926 kb on - strandat 3775.926 kb on - strandat 3775.978 kb on + strand, within AO353_17080at 3775.979 kb on - strand, within AO353_17080at 3776.068 kb on + strand, within AO353_17080at 3776.068 kb on + strand, within AO353_17080at 3776.069 kb on - strand, within AO353_17080at 3776.194 kb on - strand, within AO353_17080at 3776.194 kb on - strand, within AO353_17080at 3776.352 kb on + strand, within AO353_17080at 3776.352 kb on + strand, within AO353_17080at 3776.352 kb on + strand, within AO353_17080at 3776.352 kb on + strand, within AO353_17080at 3776.352 kb on + strand, within AO353_17080at 3776.352 kb on + strand, within AO353_17080at 3776.353 kb on - strand, within AO353_17080at 3776.353 kb on - strand, within AO353_17080at 3776.353 kb on - strand, within AO353_17080at 3776.425 kb on - strand, within AO353_17080at 3776.425 kb on - strand, within AO353_17080at 3776.448 kb on + strand, within AO353_17080at 3776.448 kb on + strand, within AO353_17080at 3776.448 kb on + strand, within AO353_17080at 3776.448 kb on + strand, within AO353_17080at 3776.448 kb on + strand, within AO353_17080at 3776.448 kb on + strand, within AO353_17080at 3776.449 kb on - strand, within AO353_17080at 3776.449 kb on - strand, within AO353_17080at 3776.449 kb on - strand, within AO353_17080at 3776.449 kb on - strand, within AO353_17080at 3776.449 kb on - strand, within AO353_17080at 3776.508 kb on + strand, within AO353_17080at 3776.508 kb on + strand, within AO353_17080at 3776.508 kb on + strand, within AO353_17080at 3776.508 kb on + strand, within AO353_17080at 3776.508 kb on + strand, within AO353_17080at 3776.508 kb on + strand, within AO353_17080at 3776.508 kb on + strand, within AO353_17080at 3776.509 kb on - strand, within AO353_17080at 3776.509 kb on - strand, within AO353_17080at 3776.509 kb on - strand, within AO353_17080at 3776.509 kb on - strand, within AO353_17080at 3776.565 kb on + strand, within AO353_17080at 3776.565 kb on + strand, within AO353_17080at 3776.565 kb on + strand, within AO353_17080at 3776.565 kb on + strand, within AO353_17080at 3776.565 kb on + strand, within AO353_17080at 3776.565 kb on + strand, within AO353_17080at 3776.565 kb on + strand, within AO353_17080at 3776.565 kb on + strand, within AO353_17080at 3776.566 kb on - strand, within AO353_17080at 3776.566 kb on - strand, within AO353_17080at 3776.566 kb on - strand, within AO353_17080at 3776.566 kb on - strand, within AO353_17080at 3776.566 kb on - strand, within AO353_17080at 3776.566 kb on - strand, within AO353_17080at 3776.566 kb on - strand, within AO353_17080at 3776.566 kb on - strand, within AO353_17080at 3776.566 kb on - strand, within AO353_17080at 3776.566 kb on - strand, within AO353_17080at 3776.619 kb on + strand, within AO353_17080at 3776.643 kb on + strand, within AO353_17080at 3776.643 kb on + strand, within AO353_17080at 3776.643 kb on + strand, within AO353_17080at 3776.643 kb on + strand, within AO353_17080at 3776.643 kb on + strand, within AO353_17080at 3776.643 kb on + strand, within AO353_17080at 3776.643 kb on + strand, within AO353_17080at 3776.643 kb on + strand, within AO353_17080at 3776.644 kb on - strand, within AO353_17080at 3776.644 kb on - strand, within AO353_17080at 3776.644 kb on - strand, within AO353_17080at 3776.644 kb on - strand, within AO353_17080at 3776.659 kb on - strand, within AO353_17080at 3776.690 kb on - strandat 3776.700 kb on + strandat 3776.700 kb on + strandat 3776.701 kb on - strandat 3776.701 kb on - strandat 3776.701 kb on - strandat 3776.748 kb on + strandat 3776.749 kb on - strandat 3776.815 kb on + strandat 3776.815 kb on + strandat 3776.816 kb on - strandat 3776.816 kb on - strandat 3776.842 kb on - strandat 3776.842 kb on - strandat 3776.842 kb on - strandat 3776.842 kb on - strandat 3776.842 kb on - strandat 3776.842 kb on - strandat 3776.881 kb on + strandat 3776.891 kb on + strandat 3776.891 kb on + strandat 3776.906 kb on + strandat 3776.906 kb on + strandat 3776.907 kb on - strandat 3776.907 kb on - strandat 3776.964 kb on - strand, within AO353_17085at 3777.162 kb on - strand, within AO353_17085at 3777.162 kb on - strand, within AO353_17085at 3777.162 kb on - strand, within AO353_17085at 3777.162 kb on - strand, within AO353_17085at 3777.162 kb on - strand, within AO353_17085at 3777.629 kb on - strand, within AO353_17090at 3777.651 kb on + strand, within AO353_17090at 3777.651 kb on + strand, within AO353_17090at 3777.651 kb on + strand, within AO353_17090at 3777.652 kb on - strand, within AO353_17090at 3777.675 kb on + strand, within AO353_17090at 3777.735 kb on + strand, within AO353_17090at 3777.735 kb on + strand, within AO353_17090at 3777.735 kb on + strand, within AO353_17090at 3777.735 kb on + strand, within AO353_17090at 3777.735 kb on + strand, within AO353_17090at 3777.735 kb on + strand, within AO353_17090at 3777.735 kb on + strand, within AO353_17090at 3777.735 kb on + strand, within AO353_17090at 3777.735 kb on + strand, within AO353_17090at 3777.736 kb on - strand, within AO353_17090at 3777.736 kb on - strand, within AO353_17090at 3777.736 kb on - strand, within AO353_17090at 3777.736 kb on - strand, within AO353_17090at 3777.736 kb on - strand, within AO353_17090at 3777.736 kb on - strand, within AO353_17090at 3777.736 kb on - strand, within AO353_17090at 3777.814 kb on + strand, within AO353_17090at 3777.859 kb on + strand, within AO353_17090at 3777.860 kb on - strand, within AO353_17090at 3777.959 kb on - strand, within AO353_17090at 3777.959 kb on - strand, within AO353_17090at 3778.063 kb on + strand, within AO353_17090at 3778.156 kb on + strandat 3778.156 kb on + strandat 3778.156 kb on + strandat 3778.156 kb on + strandat 3778.156 kb on + strandat 3778.156 kb on + strandat 3778.156 kb on + strandat 3778.156 kb on + strandat 3778.156 kb on + strandat 3778.156 kb on + strandat 3778.157 kb on - strandat 3778.157 kb on - strandat 3778.157 kb on - strandat 3778.157 kb on - strandat 3778.157 kb on - strandat 3778.167 kb on - strandat 3778.167 kb on - strandat 3778.189 kb on - strandat 3778.189 kb on - strandat 3778.189 kb on - strandat 3778.304 kb on - strand, within AO353_17095at 3778.304 kb on - strand, within AO353_17095at 3778.304 kb on - strand, within AO353_17095at 3778.304 kb on - strand, within AO353_17095at 3778.304 kb on - strand, within AO353_17095at 3778.304 kb on - strand, within AO353_17095at 3778.304 kb on - strand, within AO353_17095at 3778.305 kb on + strand, within AO353_17095at 3778.305 kb on + strand, within AO353_17095at 3778.305 kb on + strand, within AO353_17095at 3778.305 kb on + strand, within AO353_17095at 3778.305 kb on + strand, within AO353_17095at 3778.305 kb on + strand, within AO353_17095at 3778.305 kb on + strand, within AO353_17095at 3778.305 kb on + strand, within AO353_17095at 3778.305 kb on + strand, within AO353_17095at 3778.306 kb on - strand, within AO353_17095at 3778.306 kb on - strand, within AO353_17095at 3778.306 kb on - strand, within AO353_17095at 3778.306 kb on - strand, within AO353_17095

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
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3,775,925 + -0.0
3,775,925 + +0.9
3,775,925 + +0.7
3,775,925 + +0.5
3,775,925 + -0.7
3,775,925 + +0.4
3,775,925 + +0.3
3,775,925 + +0.1
3,775,925 + -2.1
3,775,925 + +0.0
3,775,926 - +0.2
3,775,926 - +0.3
3,775,926 - -1.8
3,775,926 - -0.7
3,775,926 - -0.6
3,775,926 - -1.0
3,775,978 + AO353_17080 0.15 +0.1
3,775,979 - AO353_17080 0.15 -0.7
3,776,068 + AO353_17080 0.25 +0.1
3,776,068 + AO353_17080 0.25 +1.0
3,776,069 - AO353_17080 0.25 -0.0
3,776,194 - AO353_17080 0.39 +0.1
3,776,194 - AO353_17080 0.39 +1.1
3,776,352 + AO353_17080 0.56 -0.1
3,776,352 + AO353_17080 0.56 +0.5
3,776,352 + AO353_17080 0.56 -1.5
3,776,352 + AO353_17080 0.56 -1.6
3,776,352 + AO353_17080 0.56 +0.4
3,776,352 + AO353_17080 0.56 +1.1
3,776,353 - AO353_17080 0.56 -0.4
3,776,353 - AO353_17080 0.56 -2.0
3,776,353 - AO353_17080 0.56 -0.4
3,776,425 - AO353_17080 0.64 -1.2
3,776,425 - AO353_17080 0.64 -0.9
3,776,448 + AO353_17080 0.67 +0.1
3,776,448 + AO353_17080 0.67 +0.7
3,776,448 + AO353_17080 0.67 -0.5
3,776,448 + AO353_17080 0.67 +0.1
3,776,448 + AO353_17080 0.67 -0.4
3,776,448 + AO353_17080 0.67 -0.2
3,776,449 - AO353_17080 0.67 -1.7
3,776,449 - AO353_17080 0.67 +0.4
3,776,449 - AO353_17080 0.67 +1.8
3,776,449 - AO353_17080 0.67 +0.3
3,776,449 - AO353_17080 0.67 -0.2
3,776,508 + AO353_17080 0.73 -0.6
3,776,508 + AO353_17080 0.73 -1.9
3,776,508 + AO353_17080 0.73 -0.3
3,776,508 + AO353_17080 0.73 -0.6
3,776,508 + AO353_17080 0.73 +1.1
3,776,508 + AO353_17080 0.73 -0.8
3,776,508 + AO353_17080 0.73 +1.1
3,776,509 - AO353_17080 0.73 +0.4
3,776,509 - AO353_17080 0.73 +0.3
3,776,509 - AO353_17080 0.73 -2.1
3,776,509 - AO353_17080 0.73 -0.3
3,776,565 + AO353_17080 0.80 -0.6
3,776,565 + AO353_17080 0.80 +0.4
3,776,565 + AO353_17080 0.80 -1.7
3,776,565 + AO353_17080 0.80 +1.4
3,776,565 + AO353_17080 0.80 -1.7
3,776,565 + AO353_17080 0.80 -0.5
3,776,565 + AO353_17080 0.80 +0.9
3,776,565 + AO353_17080 0.80 +1.2
3,776,566 - AO353_17080 0.80 -0.5
3,776,566 - AO353_17080 0.80 -0.0
3,776,566 - AO353_17080 0.80 -1.2
3,776,566 - AO353_17080 0.80 +1.1
3,776,566 - AO353_17080 0.80 -1.5
3,776,566 - AO353_17080 0.80 +1.1
3,776,566 - AO353_17080 0.80 +0.1
3,776,566 - AO353_17080 0.80 -1.0
3,776,566 - AO353_17080 0.80 -0.3
3,776,566 - AO353_17080 0.80 -1.1
3,776,619 + AO353_17080 0.85 -1.0
3,776,643 + AO353_17080 0.88 -0.9
3,776,643 + AO353_17080 0.88 -0.5
3,776,643 + AO353_17080 0.88 +0.1
3,776,643 + AO353_17080 0.88 +0.2
3,776,643 + AO353_17080 0.88 -1.4
3,776,643 + AO353_17080 0.88 +0.3
3,776,643 + AO353_17080 0.88 +0.1
3,776,643 + AO353_17080 0.88 -1.3
3,776,644 - AO353_17080 0.88 -2.9
3,776,644 - AO353_17080 0.88 +0.1
3,776,644 - AO353_17080 0.88 +1.3
3,776,644 - AO353_17080 0.88 +1.0
3,776,659 - AO353_17080 0.90 -1.8
3,776,690 - -1.0
3,776,700 + +0.5
3,776,700 + -0.7
3,776,701 - +0.7
3,776,701 - -0.2
3,776,701 - -0.5
3,776,748 + -1.5
3,776,749 - -0.9
3,776,815 + -0.5
3,776,815 + -0.0
3,776,816 - -2.3
3,776,816 - +1.1
3,776,842 - +1.8
3,776,842 - -0.9
3,776,842 - -2.2
3,776,842 - -1.9
3,776,842 - -1.7
3,776,842 - -1.5
3,776,881 + +0.5
3,776,891 + +1.7
3,776,891 + -0.6
3,776,906 + +1.0
3,776,906 + -1.5
3,776,907 - +1.3
3,776,907 - -2.4
3,776,964 - AO353_17085 0.14 +1.1
3,777,162 - AO353_17085 0.53 +1.9
3,777,162 - AO353_17085 0.53 -1.0
3,777,162 - AO353_17085 0.53 -0.7
3,777,162 - AO353_17085 0.53 +0.5
3,777,162 - AO353_17085 0.53 -0.5
3,777,629 - AO353_17090 0.30 -0.5
3,777,651 + AO353_17090 0.33 +0.0
3,777,651 + AO353_17090 0.33 -0.2
3,777,651 + AO353_17090 0.33 +2.1
3,777,652 - AO353_17090 0.33 +0.1
3,777,675 + AO353_17090 0.36 +1.5
3,777,735 + AO353_17090 0.43 +1.1
3,777,735 + AO353_17090 0.43 -1.2
3,777,735 + AO353_17090 0.43 +1.7
3,777,735 + AO353_17090 0.43 -0.0
3,777,735 + AO353_17090 0.43 +0.9
3,777,735 + AO353_17090 0.43 -0.7
3,777,735 + AO353_17090 0.43 +0.1
3,777,735 + AO353_17090 0.43 +0.1
3,777,735 + AO353_17090 0.43 -2.2
3,777,736 - AO353_17090 0.44 -0.2
3,777,736 - AO353_17090 0.44 +0.2
3,777,736 - AO353_17090 0.44 -0.1
3,777,736 - AO353_17090 0.44 +0.2
3,777,736 - AO353_17090 0.44 +0.3
3,777,736 - AO353_17090 0.44 +0.7
3,777,736 - AO353_17090 0.44 -0.7
3,777,814 + AO353_17090 0.54 +1.0
3,777,859 + AO353_17090 0.59 -0.0
3,777,860 - AO353_17090 0.60 +0.1
3,777,959 - AO353_17090 0.72 +0.1
3,777,959 - AO353_17090 0.72 -1.0
3,778,063 + AO353_17090 0.86 -0.7
3,778,156 + +0.5
3,778,156 + -1.0
3,778,156 + +0.5
3,778,156 + +1.5
3,778,156 + -0.3
3,778,156 + -0.9
3,778,156 + -0.2
3,778,156 + -0.0
3,778,156 + -0.8
3,778,156 + +0.0
3,778,157 - +0.6
3,778,157 - -0.7
3,778,157 - -0.9
3,778,157 - +0.6
3,778,157 - -0.9
3,778,167 - -0.2
3,778,167 - -0.3
3,778,189 - +0.1
3,778,189 - -0.5
3,778,189 - -0.6
3,778,304 - AO353_17095 0.15 -0.5
3,778,304 - AO353_17095 0.15 -0.1
3,778,304 - AO353_17095 0.15 +1.8
3,778,304 - AO353_17095 0.15 -0.7
3,778,304 - AO353_17095 0.15 -0.7
3,778,304 - AO353_17095 0.15 +1.1
3,778,304 - AO353_17095 0.15 -0.3
3,778,305 + AO353_17095 0.15 -1.6
3,778,305 + AO353_17095 0.15 -0.2
3,778,305 + AO353_17095 0.15 -1.5
3,778,305 + AO353_17095 0.15 +0.2
3,778,305 + AO353_17095 0.15 +0.4
3,778,305 + AO353_17095 0.15 +0.2
3,778,305 + AO353_17095 0.15 -0.1
3,778,305 + AO353_17095 0.15 +0.5
3,778,305 + AO353_17095 0.15 -0.7
3,778,306 - AO353_17095 0.15 -0.3
3,778,306 - AO353_17095 0.15 -1.2
3,778,306 - AO353_17095 0.15 -0.8
3,778,306 - AO353_17095 0.15 +0.2

Or see this region's nucleotide sequence