Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_16345

Experiment: L-Aspartic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_16335 and AO353_16340 are separated by 16 nucleotidesAO353_16340 and AO353_16345 are separated by 15 nucleotidesAO353_16345 and AO353_16350 are separated by 93 nucleotidesAO353_16350 and AO353_16355 are separated by 105 nucleotides AO353_16335: AO353_16335 - 2-methylisocitrate lyase, at 3,625,795 to 3,626,616 _16335 AO353_16340: AO353_16340 - extensin, at 3,626,633 to 3,627,331 _16340 AO353_16345: AO353_16345 - energy transducer TonB, at 3,627,347 to 3,627,967 _16345 AO353_16350: AO353_16350 - SAM-dependent methyltransferase, at 3,628,061 to 3,628,843 _16350 AO353_16355: AO353_16355 - TetR family transcriptional regulator, at 3,628,949 to 3,629,593 _16355 Position (kb) 3627 3628Strain fitness (log2 ratio) -2 -1 0 1 2at 3626.373 kb on - strand, within AO353_16335at 3626.373 kb on - strand, within AO353_16335at 3626.521 kb on + strand, within AO353_16335at 3626.521 kb on + strand, within AO353_16335at 3626.521 kb on + strand, within AO353_16335at 3627.020 kb on + strand, within AO353_16340at 3627.020 kb on + strand, within AO353_16340at 3627.020 kb on + strand, within AO353_16340at 3627.020 kb on + strand, within AO353_16340at 3627.020 kb on + strand, within AO353_16340at 3627.020 kb on + strand, within AO353_16340at 3627.020 kb on + strand, within AO353_16340at 3627.020 kb on + strand, within AO353_16340at 3627.020 kb on + strand, within AO353_16340at 3627.020 kb on + strand, within AO353_16340at 3627.020 kb on + strand, within AO353_16340at 3627.020 kb on + strand, within AO353_16340at 3627.020 kb on + strand, within AO353_16340at 3627.020 kb on + strand, within AO353_16340at 3627.020 kb on + strand, within AO353_16340at 3627.020 kb on + strand, within AO353_16340at 3627.021 kb on - strand, within AO353_16340at 3627.021 kb on - strand, within AO353_16340at 3627.021 kb on - strand, within AO353_16340at 3627.021 kb on - strand, within AO353_16340at 3627.021 kb on - strand, within AO353_16340at 3627.021 kb on - strand, within AO353_16340at 3627.021 kb on - strand, within AO353_16340at 3627.021 kb on - strand, within AO353_16340at 3627.021 kb on - strand, within AO353_16340at 3627.021 kb on - strand, within AO353_16340at 3627.021 kb on - strand, within AO353_16340at 3627.021 kb on - strand, within AO353_16340at 3627.021 kb on - strand, within AO353_16340at 3627.021 kb on - strand, within AO353_16340at 3627.073 kb on + strand, within AO353_16340at 3627.073 kb on + strand, within AO353_16340at 3627.073 kb on + strand, within AO353_16340at 3627.073 kb on + strand, within AO353_16340at 3627.073 kb on + strand, within AO353_16340at 3627.073 kb on + strand, within AO353_16340at 3627.073 kb on + strand, within AO353_16340at 3627.074 kb on - strand, within AO353_16340at 3627.074 kb on - strand, within AO353_16340at 3627.074 kb on - strand, within AO353_16340at 3627.074 kb on - strand, within AO353_16340at 3627.074 kb on - strand, within AO353_16340at 3627.074 kb on - strand, within AO353_16340at 3627.074 kb on - strand, within AO353_16340at 3627.077 kb on + strand, within AO353_16340at 3627.077 kb on + strand, within AO353_16340at 3627.077 kb on + strand, within AO353_16340at 3627.077 kb on + strand, within AO353_16340at 3627.077 kb on + strand, within AO353_16340at 3627.077 kb on + strand, within AO353_16340at 3627.077 kb on + strand, within AO353_16340at 3627.077 kb on + strand, within AO353_16340at 3627.077 kb on + strand, within AO353_16340at 3627.077 kb on + strand, within AO353_16340at 3627.077 kb on + strand, within AO353_16340at 3627.077 kb on + strand, within AO353_16340at 3627.077 kb on + strand, within AO353_16340at 3627.078 kb on - strand, within AO353_16340at 3627.078 kb on - strand, within AO353_16340at 3627.078 kb on - strand, within AO353_16340at 3627.078 kb on - strand, within AO353_16340at 3627.078 kb on - strand, within AO353_16340at 3627.078 kb on - strand, within AO353_16340at 3627.078 kb on - strand, within AO353_16340at 3627.078 kb on - strand, within AO353_16340at 3627.078 kb on - strand, within AO353_16340at 3627.078 kb on - strand, within AO353_16340at 3627.078 kb on - strand, within AO353_16340at 3627.163 kb on + strand, within AO353_16340at 3627.213 kb on + strand, within AO353_16340at 3627.214 kb on - strand, within AO353_16340at 3627.247 kb on + strand, within AO353_16340at 3627.247 kb on + strand, within AO353_16340at 3627.247 kb on + strand, within AO353_16340at 3627.248 kb on - strand, within AO353_16340at 3627.269 kb on + strandat 3627.269 kb on + strandat 3627.269 kb on + strandat 3627.269 kb on + strandat 3627.270 kb on - strandat 3627.270 kb on - strandat 3627.270 kb on - strandat 3627.460 kb on + strand, within AO353_16345at 3627.804 kb on + strand, within AO353_16345at 3627.804 kb on + strand, within AO353_16345at 3627.904 kb on + strand, within AO353_16345at 3627.904 kb on + strand, within AO353_16345at 3627.904 kb on + strand, within AO353_16345at 3627.904 kb on + strand, within AO353_16345at 3627.936 kb on + strandat 3627.936 kb on + strandat 3627.936 kb on + strandat 3627.936 kb on + strandat 3627.936 kb on + strandat 3627.936 kb on + strandat 3627.936 kb on + strandat 3627.937 kb on - strandat 3627.937 kb on - strandat 3627.937 kb on - strandat 3627.937 kb on - strandat 3627.937 kb on - strandat 3627.937 kb on - strandat 3627.937 kb on - strandat 3627.937 kb on - strandat 3627.941 kb on + strandat 3627.941 kb on + strandat 3627.941 kb on + strandat 3627.941 kb on + strandat 3627.942 kb on - strandat 3628.007 kb on - strandat 3628.038 kb on + strandat 3628.292 kb on + strand, within AO353_16350at 3628.293 kb on - strand, within AO353_16350at 3628.293 kb on - strand, within AO353_16350at 3628.293 kb on - strand, within AO353_16350at 3628.293 kb on - strand, within AO353_16350at 3628.293 kb on - strand, within AO353_16350at 3628.589 kb on + strand, within AO353_16350at 3628.589 kb on + strand, within AO353_16350at 3628.589 kb on + strand, within AO353_16350at 3628.589 kb on + strand, within AO353_16350at 3628.589 kb on + strand, within AO353_16350at 3628.589 kb on + strand, within AO353_16350at 3628.590 kb on - strand, within AO353_16350at 3628.590 kb on - strand, within AO353_16350at 3628.590 kb on - strand, within AO353_16350at 3628.809 kb on - strandat 3628.817 kb on + strandat 3628.817 kb on + strandat 3628.818 kb on - strandat 3628.841 kb on + strandat 3628.842 kb on - strandat 3628.881 kb on - strandat 3628.881 kb on - strandat 3628.900 kb on - strandat 3628.939 kb on + strandat 3628.940 kb on - strandat 3628.940 kb on - strandat 3628.940 kb on - strandat 3628.940 kb on - strandat 3628.943 kb on + strandat 3628.943 kb on + strandat 3628.943 kb on + strandat 3628.943 kb on + strandat 3628.943 kb on + strandat 3628.943 kb on + strandat 3628.944 kb on - strandat 3628.944 kb on - strandat 3628.944 kb on - strandat 3628.944 kb on - strandat 3628.944 kb on - strandat 3628.944 kb on - strandat 3628.944 kb on - strandat 3628.944 kb on - strandat 3628.947 kb on + strandat 3628.947 kb on + strandat 3628.947 kb on + strandat 3628.947 kb on + strandat 3628.947 kb on + strandat 3628.947 kb on + strandat 3628.947 kb on + strandat 3628.947 kb on + strandat 3628.948 kb on - strandat 3628.948 kb on - strandat 3628.948 kb on - strandat 3628.948 kb on - strandat 3628.948 kb on - strandat 3628.948 kb on - strandat 3628.948 kb on - strandat 3628.948 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
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3,626,373 - AO353_16335 0.70 -2.5
3,626,373 - AO353_16335 0.70 -0.8
3,626,521 + AO353_16335 0.88 +2.2
3,626,521 + AO353_16335 0.88 -0.3
3,626,521 + AO353_16335 0.88 +1.6
3,627,020 + AO353_16340 0.55 -0.5
3,627,020 + AO353_16340 0.55 -0.5
3,627,020 + AO353_16340 0.55 -0.7
3,627,020 + AO353_16340 0.55 +1.1
3,627,020 + AO353_16340 0.55 +0.6
3,627,020 + AO353_16340 0.55 -0.7
3,627,020 + AO353_16340 0.55 -1.8
3,627,020 + AO353_16340 0.55 -0.6
3,627,020 + AO353_16340 0.55 +0.9
3,627,020 + AO353_16340 0.55 -1.7
3,627,020 + AO353_16340 0.55 +1.6
3,627,020 + AO353_16340 0.55 -1.0
3,627,020 + AO353_16340 0.55 +1.0
3,627,020 + AO353_16340 0.55 -0.6
3,627,020 + AO353_16340 0.55 +0.2
3,627,020 + AO353_16340 0.55 -1.0
3,627,021 - AO353_16340 0.56 +0.8
3,627,021 - AO353_16340 0.56 +0.9
3,627,021 - AO353_16340 0.56 -1.2
3,627,021 - AO353_16340 0.56 -0.1
3,627,021 - AO353_16340 0.56 -1.0
3,627,021 - AO353_16340 0.56 -0.8
3,627,021 - AO353_16340 0.56 -0.6
3,627,021 - AO353_16340 0.56 +1.0
3,627,021 - AO353_16340 0.56 -0.6
3,627,021 - AO353_16340 0.56 -0.4
3,627,021 - AO353_16340 0.56 +1.2
3,627,021 - AO353_16340 0.56 -1.9
3,627,021 - AO353_16340 0.56 -0.8
3,627,021 - AO353_16340 0.56 +0.5
3,627,073 + AO353_16340 0.63 +2.2
3,627,073 + AO353_16340 0.63 -0.1
3,627,073 + AO353_16340 0.63 -0.5
3,627,073 + AO353_16340 0.63 -1.0
3,627,073 + AO353_16340 0.63 +1.0
3,627,073 + AO353_16340 0.63 -1.5
3,627,073 + AO353_16340 0.63 -1.3
3,627,074 - AO353_16340 0.63 -0.3
3,627,074 - AO353_16340 0.63 -0.8
3,627,074 - AO353_16340 0.63 -0.3
3,627,074 - AO353_16340 0.63 -1.4
3,627,074 - AO353_16340 0.63 -0.1
3,627,074 - AO353_16340 0.63 +1.4
3,627,074 - AO353_16340 0.63 -1.4
3,627,077 + AO353_16340 0.64 +1.6
3,627,077 + AO353_16340 0.64 -1.5
3,627,077 + AO353_16340 0.64 +0.0
3,627,077 + AO353_16340 0.64 +0.4
3,627,077 + AO353_16340 0.64 +0.6
3,627,077 + AO353_16340 0.64 -0.5
3,627,077 + AO353_16340 0.64 +0.4
3,627,077 + AO353_16340 0.64 +1.8
3,627,077 + AO353_16340 0.64 +0.0
3,627,077 + AO353_16340 0.64 -0.4
3,627,077 + AO353_16340 0.64 +0.5
3,627,077 + AO353_16340 0.64 +0.6
3,627,077 + AO353_16340 0.64 +1.3
3,627,078 - AO353_16340 0.64 +0.4
3,627,078 - AO353_16340 0.64 +0.2
3,627,078 - AO353_16340 0.64 -0.7
3,627,078 - AO353_16340 0.64 +0.6
3,627,078 - AO353_16340 0.64 +1.6
3,627,078 - AO353_16340 0.64 -0.3
3,627,078 - AO353_16340 0.64 +0.8
3,627,078 - AO353_16340 0.64 +0.2
3,627,078 - AO353_16340 0.64 -0.4
3,627,078 - AO353_16340 0.64 +1.2
3,627,078 - AO353_16340 0.64 -1.0
3,627,163 + AO353_16340 0.76 -0.1
3,627,213 + AO353_16340 0.83 -0.2
3,627,214 - AO353_16340 0.83 -0.4
3,627,247 + AO353_16340 0.88 -0.1
3,627,247 + AO353_16340 0.88 +0.6
3,627,247 + AO353_16340 0.88 +0.6
3,627,248 - AO353_16340 0.88 +1.2
3,627,269 + -0.8
3,627,269 + +0.3
3,627,269 + -1.0
3,627,269 + +0.6
3,627,270 - -0.9
3,627,270 - -1.1
3,627,270 - -1.7
3,627,460 + AO353_16345 0.18 -2.7
3,627,804 + AO353_16345 0.74 -0.1
3,627,804 + AO353_16345 0.74 -1.4
3,627,904 + AO353_16345 0.90 -0.1
3,627,904 + AO353_16345 0.90 -0.8
3,627,904 + AO353_16345 0.90 -0.2
3,627,904 + AO353_16345 0.90 +0.8
3,627,936 + -1.6
3,627,936 + -0.0
3,627,936 + -0.9
3,627,936 + +0.2
3,627,936 + -0.6
3,627,936 + -0.2
3,627,936 + -1.9
3,627,937 - -1.7
3,627,937 - +0.0
3,627,937 - -0.2
3,627,937 - +1.6
3,627,937 - +0.6
3,627,937 - +1.0
3,627,937 - +0.6
3,627,937 - +0.4
3,627,941 + -2.0
3,627,941 + -0.9
3,627,941 + +0.2
3,627,941 + +0.1
3,627,942 - -1.3
3,628,007 - -0.6
3,628,038 + +2.2
3,628,292 + AO353_16350 0.30 +0.2
3,628,293 - AO353_16350 0.30 +1.4
3,628,293 - AO353_16350 0.30 +0.6
3,628,293 - AO353_16350 0.30 +0.6
3,628,293 - AO353_16350 0.30 -0.5
3,628,293 - AO353_16350 0.30 +0.3
3,628,589 + AO353_16350 0.67 -0.5
3,628,589 + AO353_16350 0.67 +1.2
3,628,589 + AO353_16350 0.67 -0.1
3,628,589 + AO353_16350 0.67 +1.2
3,628,589 + AO353_16350 0.67 -0.8
3,628,589 + AO353_16350 0.67 +1.0
3,628,590 - AO353_16350 0.68 +1.8
3,628,590 - AO353_16350 0.68 +0.2
3,628,590 - AO353_16350 0.68 +1.8
3,628,809 - +0.9
3,628,817 + -0.1
3,628,817 + -0.3
3,628,818 - -0.1
3,628,841 + -0.2
3,628,842 - -0.2
3,628,881 - +0.8
3,628,881 - -1.6
3,628,900 - -0.8
3,628,939 + -0.6
3,628,940 - -1.3
3,628,940 - -0.7
3,628,940 - -0.9
3,628,940 - +0.2
3,628,943 + -1.5
3,628,943 + -0.3
3,628,943 + -0.0
3,628,943 + +0.1
3,628,943 + +0.2
3,628,943 + +0.6
3,628,944 - -0.1
3,628,944 - +0.7
3,628,944 - -0.4
3,628,944 - -0.4
3,628,944 - +0.4
3,628,944 - -0.8
3,628,944 - +0.2
3,628,944 - +0.3
3,628,947 + +0.8
3,628,947 + +0.4
3,628,947 + -0.2
3,628,947 + -0.1
3,628,947 + -0.1
3,628,947 + -1.8
3,628,947 + +0.2
3,628,947 + +0.6
3,628,948 - -1.9
3,628,948 - -0.1
3,628,948 - +0.0
3,628,948 - -0.8
3,628,948 - +1.4
3,628,948 - -1.4
3,628,948 - -0.8
3,628,948 - +1.9

Or see this region's nucleotide sequence