Experiment: L-Aspartic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_16335 and AO353_16340 are separated by 16 nucleotides AO353_16340 and AO353_16345 are separated by 15 nucleotides AO353_16345 and AO353_16350 are separated by 93 nucleotides AO353_16350 and AO353_16355 are separated by 105 nucleotides
AO353_16335: AO353_16335 - 2-methylisocitrate lyase, at 3,625,795 to 3,626,616
_16335
AO353_16340: AO353_16340 - extensin, at 3,626,633 to 3,627,331
_16340
AO353_16345: AO353_16345 - energy transducer TonB, at 3,627,347 to 3,627,967
_16345
AO353_16350: AO353_16350 - SAM-dependent methyltransferase, at 3,628,061 to 3,628,843
_16350
AO353_16355: AO353_16355 - TetR family transcriptional regulator, at 3,628,949 to 3,629,593
_16355
Position (kb)
3627
3628 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3626.373 kb on - strand, within AO353_16335 at 3626.373 kb on - strand, within AO353_16335 at 3626.521 kb on + strand, within AO353_16335 at 3626.521 kb on + strand, within AO353_16335 at 3626.521 kb on + strand, within AO353_16335 at 3627.020 kb on + strand, within AO353_16340 at 3627.020 kb on + strand, within AO353_16340 at 3627.020 kb on + strand, within AO353_16340 at 3627.020 kb on + strand, within AO353_16340 at 3627.020 kb on + strand, within AO353_16340 at 3627.020 kb on + strand, within AO353_16340 at 3627.020 kb on + strand, within AO353_16340 at 3627.020 kb on + strand, within AO353_16340 at 3627.020 kb on + strand, within AO353_16340 at 3627.020 kb on + strand, within AO353_16340 at 3627.020 kb on + strand, within AO353_16340 at 3627.020 kb on + strand, within AO353_16340 at 3627.020 kb on + strand, within AO353_16340 at 3627.020 kb on + strand, within AO353_16340 at 3627.020 kb on + strand, within AO353_16340 at 3627.020 kb on + strand, within AO353_16340 at 3627.021 kb on - strand, within AO353_16340 at 3627.021 kb on - strand, within AO353_16340 at 3627.021 kb on - strand, within AO353_16340 at 3627.021 kb on - strand, within AO353_16340 at 3627.021 kb on - strand, within AO353_16340 at 3627.021 kb on - strand, within AO353_16340 at 3627.021 kb on - strand, within AO353_16340 at 3627.021 kb on - strand, within AO353_16340 at 3627.021 kb on - strand, within AO353_16340 at 3627.021 kb on - strand, within AO353_16340 at 3627.021 kb on - strand, within AO353_16340 at 3627.021 kb on - strand, within AO353_16340 at 3627.021 kb on - strand, within AO353_16340 at 3627.021 kb on - strand, within AO353_16340 at 3627.073 kb on + strand, within AO353_16340 at 3627.073 kb on + strand, within AO353_16340 at 3627.073 kb on + strand, within AO353_16340 at 3627.073 kb on + strand, within AO353_16340 at 3627.073 kb on + strand, within AO353_16340 at 3627.073 kb on + strand, within AO353_16340 at 3627.073 kb on + strand, within AO353_16340 at 3627.074 kb on - strand, within AO353_16340 at 3627.074 kb on - strand, within AO353_16340 at 3627.074 kb on - strand, within AO353_16340 at 3627.074 kb on - strand, within AO353_16340 at 3627.074 kb on - strand, within AO353_16340 at 3627.074 kb on - strand, within AO353_16340 at 3627.074 kb on - strand, within AO353_16340 at 3627.077 kb on + strand, within AO353_16340 at 3627.077 kb on + strand, within AO353_16340 at 3627.077 kb on + strand, within AO353_16340 at 3627.077 kb on + strand, within AO353_16340 at 3627.077 kb on + strand, within AO353_16340 at 3627.077 kb on + strand, within AO353_16340 at 3627.077 kb on + strand, within AO353_16340 at 3627.077 kb on + strand, within AO353_16340 at 3627.077 kb on + strand, within AO353_16340 at 3627.077 kb on + strand, within AO353_16340 at 3627.077 kb on + strand, within AO353_16340 at 3627.077 kb on + strand, within AO353_16340 at 3627.077 kb on + strand, within AO353_16340 at 3627.078 kb on - strand, within AO353_16340 at 3627.078 kb on - strand, within AO353_16340 at 3627.078 kb on - strand, within AO353_16340 at 3627.078 kb on - strand, within AO353_16340 at 3627.078 kb on - strand, within AO353_16340 at 3627.078 kb on - strand, within AO353_16340 at 3627.078 kb on - strand, within AO353_16340 at 3627.078 kb on - strand, within AO353_16340 at 3627.078 kb on - strand, within AO353_16340 at 3627.078 kb on - strand, within AO353_16340 at 3627.078 kb on - strand, within AO353_16340 at 3627.163 kb on + strand, within AO353_16340 at 3627.213 kb on + strand, within AO353_16340 at 3627.214 kb on - strand, within AO353_16340 at 3627.247 kb on + strand, within AO353_16340 at 3627.247 kb on + strand, within AO353_16340 at 3627.247 kb on + strand, within AO353_16340 at 3627.248 kb on - strand, within AO353_16340 at 3627.269 kb on + strand at 3627.269 kb on + strand at 3627.269 kb on + strand at 3627.269 kb on + strand at 3627.270 kb on - strand at 3627.270 kb on - strand at 3627.270 kb on - strand at 3627.460 kb on + strand, within AO353_16345 at 3627.804 kb on + strand, within AO353_16345 at 3627.804 kb on + strand, within AO353_16345 at 3627.904 kb on + strand, within AO353_16345 at 3627.904 kb on + strand, within AO353_16345 at 3627.904 kb on + strand, within AO353_16345 at 3627.904 kb on + strand, within AO353_16345 at 3627.936 kb on + strand at 3627.936 kb on + strand at 3627.936 kb on + strand at 3627.936 kb on + strand at 3627.936 kb on + strand at 3627.936 kb on + strand at 3627.936 kb on + strand at 3627.937 kb on - strand at 3627.937 kb on - strand at 3627.937 kb on - strand at 3627.937 kb on - strand at 3627.937 kb on - strand at 3627.937 kb on - strand at 3627.937 kb on - strand at 3627.937 kb on - strand at 3627.941 kb on + strand at 3627.941 kb on + strand at 3627.941 kb on + strand at 3627.941 kb on + strand at 3627.942 kb on - strand at 3628.007 kb on - strand at 3628.038 kb on + strand at 3628.292 kb on + strand, within AO353_16350 at 3628.293 kb on - strand, within AO353_16350 at 3628.293 kb on - strand, within AO353_16350 at 3628.293 kb on - strand, within AO353_16350 at 3628.293 kb on - strand, within AO353_16350 at 3628.293 kb on - strand, within AO353_16350 at 3628.589 kb on + strand, within AO353_16350 at 3628.589 kb on + strand, within AO353_16350 at 3628.589 kb on + strand, within AO353_16350 at 3628.589 kb on + strand, within AO353_16350 at 3628.589 kb on + strand, within AO353_16350 at 3628.589 kb on + strand, within AO353_16350 at 3628.590 kb on - strand, within AO353_16350 at 3628.590 kb on - strand, within AO353_16350 at 3628.590 kb on - strand, within AO353_16350 at 3628.809 kb on - strand at 3628.817 kb on + strand at 3628.817 kb on + strand at 3628.818 kb on - strand at 3628.841 kb on + strand at 3628.842 kb on - strand at 3628.881 kb on - strand at 3628.881 kb on - strand at 3628.900 kb on - strand at 3628.939 kb on + strand at 3628.940 kb on - strand at 3628.940 kb on - strand at 3628.940 kb on - strand at 3628.940 kb on - strand at 3628.943 kb on + strand at 3628.943 kb on + strand at 3628.943 kb on + strand at 3628.943 kb on + strand at 3628.943 kb on + strand at 3628.943 kb on + strand at 3628.944 kb on - strand at 3628.944 kb on - strand at 3628.944 kb on - strand at 3628.944 kb on - strand at 3628.944 kb on - strand at 3628.944 kb on - strand at 3628.944 kb on - strand at 3628.944 kb on - strand at 3628.947 kb on + strand at 3628.947 kb on + strand at 3628.947 kb on + strand at 3628.947 kb on + strand at 3628.947 kb on + strand at 3628.947 kb on + strand at 3628.947 kb on + strand at 3628.947 kb on + strand at 3628.948 kb on - strand at 3628.948 kb on - strand at 3628.948 kb on - strand at 3628.948 kb on - strand at 3628.948 kb on - strand at 3628.948 kb on - strand at 3628.948 kb on - strand at 3628.948 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Aspartic Acid (C) remove 3,626,373 - AO353_16335 0.70 -2.5 3,626,373 - AO353_16335 0.70 -0.8 3,626,521 + AO353_16335 0.88 +2.2 3,626,521 + AO353_16335 0.88 -0.3 3,626,521 + AO353_16335 0.88 +1.6 3,627,020 + AO353_16340 0.55 -0.5 3,627,020 + AO353_16340 0.55 -0.5 3,627,020 + AO353_16340 0.55 -0.7 3,627,020 + AO353_16340 0.55 +1.1 3,627,020 + AO353_16340 0.55 +0.6 3,627,020 + AO353_16340 0.55 -0.7 3,627,020 + AO353_16340 0.55 -1.8 3,627,020 + AO353_16340 0.55 -0.6 3,627,020 + AO353_16340 0.55 +0.9 3,627,020 + AO353_16340 0.55 -1.7 3,627,020 + AO353_16340 0.55 +1.6 3,627,020 + AO353_16340 0.55 -1.0 3,627,020 + AO353_16340 0.55 +1.0 3,627,020 + AO353_16340 0.55 -0.6 3,627,020 + AO353_16340 0.55 +0.2 3,627,020 + AO353_16340 0.55 -1.0 3,627,021 - AO353_16340 0.56 +0.8 3,627,021 - AO353_16340 0.56 +0.9 3,627,021 - AO353_16340 0.56 -1.2 3,627,021 - AO353_16340 0.56 -0.1 3,627,021 - AO353_16340 0.56 -1.0 3,627,021 - AO353_16340 0.56 -0.8 3,627,021 - AO353_16340 0.56 -0.6 3,627,021 - AO353_16340 0.56 +1.0 3,627,021 - AO353_16340 0.56 -0.6 3,627,021 - AO353_16340 0.56 -0.4 3,627,021 - AO353_16340 0.56 +1.2 3,627,021 - AO353_16340 0.56 -1.9 3,627,021 - AO353_16340 0.56 -0.8 3,627,021 - AO353_16340 0.56 +0.5 3,627,073 + AO353_16340 0.63 +2.2 3,627,073 + AO353_16340 0.63 -0.1 3,627,073 + AO353_16340 0.63 -0.5 3,627,073 + AO353_16340 0.63 -1.0 3,627,073 + AO353_16340 0.63 +1.0 3,627,073 + AO353_16340 0.63 -1.5 3,627,073 + AO353_16340 0.63 -1.3 3,627,074 - AO353_16340 0.63 -0.3 3,627,074 - AO353_16340 0.63 -0.8 3,627,074 - AO353_16340 0.63 -0.3 3,627,074 - AO353_16340 0.63 -1.4 3,627,074 - AO353_16340 0.63 -0.1 3,627,074 - AO353_16340 0.63 +1.4 3,627,074 - AO353_16340 0.63 -1.4 3,627,077 + AO353_16340 0.64 +1.6 3,627,077 + AO353_16340 0.64 -1.5 3,627,077 + AO353_16340 0.64 +0.0 3,627,077 + AO353_16340 0.64 +0.4 3,627,077 + AO353_16340 0.64 +0.6 3,627,077 + AO353_16340 0.64 -0.5 3,627,077 + AO353_16340 0.64 +0.4 3,627,077 + AO353_16340 0.64 +1.8 3,627,077 + AO353_16340 0.64 +0.0 3,627,077 + AO353_16340 0.64 -0.4 3,627,077 + AO353_16340 0.64 +0.5 3,627,077 + AO353_16340 0.64 +0.6 3,627,077 + AO353_16340 0.64 +1.3 3,627,078 - AO353_16340 0.64 +0.4 3,627,078 - AO353_16340 0.64 +0.2 3,627,078 - AO353_16340 0.64 -0.7 3,627,078 - AO353_16340 0.64 +0.6 3,627,078 - AO353_16340 0.64 +1.6 3,627,078 - AO353_16340 0.64 -0.3 3,627,078 - AO353_16340 0.64 +0.8 3,627,078 - AO353_16340 0.64 +0.2 3,627,078 - AO353_16340 0.64 -0.4 3,627,078 - AO353_16340 0.64 +1.2 3,627,078 - AO353_16340 0.64 -1.0 3,627,163 + AO353_16340 0.76 -0.1 3,627,213 + AO353_16340 0.83 -0.2 3,627,214 - AO353_16340 0.83 -0.4 3,627,247 + AO353_16340 0.88 -0.1 3,627,247 + AO353_16340 0.88 +0.6 3,627,247 + AO353_16340 0.88 +0.6 3,627,248 - AO353_16340 0.88 +1.2 3,627,269 + -0.8 3,627,269 + +0.3 3,627,269 + -1.0 3,627,269 + +0.6 3,627,270 - -0.9 3,627,270 - -1.1 3,627,270 - -1.7 3,627,460 + AO353_16345 0.18 -2.7 3,627,804 + AO353_16345 0.74 -0.1 3,627,804 + AO353_16345 0.74 -1.4 3,627,904 + AO353_16345 0.90 -0.1 3,627,904 + AO353_16345 0.90 -0.8 3,627,904 + AO353_16345 0.90 -0.2 3,627,904 + AO353_16345 0.90 +0.8 3,627,936 + -1.6 3,627,936 + -0.0 3,627,936 + -0.9 3,627,936 + +0.2 3,627,936 + -0.6 3,627,936 + -0.2 3,627,936 + -1.9 3,627,937 - -1.7 3,627,937 - +0.0 3,627,937 - -0.2 3,627,937 - +1.6 3,627,937 - +0.6 3,627,937 - +1.0 3,627,937 - +0.6 3,627,937 - +0.4 3,627,941 + -2.0 3,627,941 + -0.9 3,627,941 + +0.2 3,627,941 + +0.1 3,627,942 - -1.3 3,628,007 - -0.6 3,628,038 + +2.2 3,628,292 + AO353_16350 0.30 +0.2 3,628,293 - AO353_16350 0.30 +1.4 3,628,293 - AO353_16350 0.30 +0.6 3,628,293 - AO353_16350 0.30 +0.6 3,628,293 - AO353_16350 0.30 -0.5 3,628,293 - AO353_16350 0.30 +0.3 3,628,589 + AO353_16350 0.67 -0.5 3,628,589 + AO353_16350 0.67 +1.2 3,628,589 + AO353_16350 0.67 -0.1 3,628,589 + AO353_16350 0.67 +1.2 3,628,589 + AO353_16350 0.67 -0.8 3,628,589 + AO353_16350 0.67 +1.0 3,628,590 - AO353_16350 0.68 +1.8 3,628,590 - AO353_16350 0.68 +0.2 3,628,590 - AO353_16350 0.68 +1.8 3,628,809 - +0.9 3,628,817 + -0.1 3,628,817 + -0.3 3,628,818 - -0.1 3,628,841 + -0.2 3,628,842 - -0.2 3,628,881 - +0.8 3,628,881 - -1.6 3,628,900 - -0.8 3,628,939 + -0.6 3,628,940 - -1.3 3,628,940 - -0.7 3,628,940 - -0.9 3,628,940 - +0.2 3,628,943 + -1.5 3,628,943 + -0.3 3,628,943 + -0.0 3,628,943 + +0.1 3,628,943 + +0.2 3,628,943 + +0.6 3,628,944 - -0.1 3,628,944 - +0.7 3,628,944 - -0.4 3,628,944 - -0.4 3,628,944 - +0.4 3,628,944 - -0.8 3,628,944 - +0.2 3,628,944 - +0.3 3,628,947 + +0.8 3,628,947 + +0.4 3,628,947 + -0.2 3,628,947 + -0.1 3,628,947 + -0.1 3,628,947 + -1.8 3,628,947 + +0.2 3,628,947 + +0.6 3,628,948 - -1.9 3,628,948 - -0.1 3,628,948 - +0.0 3,628,948 - -0.8 3,628,948 - +1.4 3,628,948 - -1.4 3,628,948 - -0.8 3,628,948 - +1.9
Or see this region's nucleotide sequence