Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_15445

Experiment: L-Aspartic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_15440 and AO353_15445 are separated by 300 nucleotidesAO353_15445 and AO353_15450 are separated by 815 nucleotides AO353_15440: AO353_15440 - dihydropteridine reductase, at 3,412,656 to 3,413,837 _15440 AO353_15445: AO353_15445 - disulfide bond formation protein B, at 3,414,138 to 3,414,647 _15445 AO353_15450: AO353_15450 - ubiquinol oxidase subunit II, at 3,415,463 to 3,416,413 _15450 Position (kb) 3414 3415Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3413.175 kb on + strand, within AO353_15440at 3413.175 kb on + strand, within AO353_15440at 3413.176 kb on - strand, within AO353_15440at 3413.176 kb on - strand, within AO353_15440at 3413.176 kb on - strand, within AO353_15440at 3413.226 kb on + strand, within AO353_15440at 3413.226 kb on + strand, within AO353_15440at 3413.226 kb on + strand, within AO353_15440at 3413.226 kb on + strand, within AO353_15440at 3413.226 kb on + strand, within AO353_15440at 3413.226 kb on + strand, within AO353_15440at 3413.226 kb on + strand, within AO353_15440at 3413.274 kb on + strand, within AO353_15440at 3413.274 kb on + strand, within AO353_15440at 3413.274 kb on + strand, within AO353_15440at 3413.274 kb on + strand, within AO353_15440at 3413.274 kb on + strand, within AO353_15440at 3413.275 kb on - strand, within AO353_15440at 3413.352 kb on + strand, within AO353_15440at 3413.352 kb on + strand, within AO353_15440at 3413.352 kb on + strand, within AO353_15440at 3413.353 kb on - strand, within AO353_15440at 3413.353 kb on - strand, within AO353_15440at 3413.353 kb on - strand, within AO353_15440at 3413.526 kb on - strand, within AO353_15440at 3413.613 kb on + strand, within AO353_15440at 3413.613 kb on + strand, within AO353_15440at 3413.613 kb on + strand, within AO353_15440at 3413.613 kb on + strand, within AO353_15440at 3413.613 kb on + strand, within AO353_15440at 3413.613 kb on + strand, within AO353_15440at 3413.614 kb on - strand, within AO353_15440at 3413.614 kb on - strand, within AO353_15440at 3413.614 kb on - strand, within AO353_15440at 3413.614 kb on - strand, within AO353_15440at 3413.614 kb on - strand, within AO353_15440at 3413.614 kb on - strand, within AO353_15440at 3413.614 kb on - strand, within AO353_15440at 3413.614 kb on - strand, within AO353_15440at 3413.721 kb on + strandat 3413.721 kb on + strandat 3413.721 kb on + strandat 3413.721 kb on + strandat 3413.722 kb on - strandat 3413.722 kb on - strandat 3413.722 kb on - strandat 3413.722 kb on - strandat 3413.722 kb on - strandat 3413.722 kb on - strandat 3413.722 kb on - strandat 3413.835 kb on + strandat 3413.835 kb on + strandat 3413.835 kb on + strandat 3413.835 kb on + strandat 3413.835 kb on + strandat 3413.836 kb on - strandat 3413.836 kb on - strandat 3413.836 kb on - strandat 3413.836 kb on - strandat 3413.841 kb on + strandat 3413.842 kb on - strandat 3413.842 kb on - strandat 3413.842 kb on - strandat 3413.890 kb on + strandat 3413.891 kb on - strandat 3413.909 kb on + strandat 3413.909 kb on + strandat 3413.909 kb on + strandat 3413.909 kb on + strandat 3413.909 kb on + strandat 3413.909 kb on + strandat 3413.910 kb on - strandat 3413.915 kb on + strandat 3413.915 kb on + strandat 3413.915 kb on + strandat 3413.915 kb on + strandat 3413.915 kb on + strandat 3413.929 kb on + strandat 3413.929 kb on + strandat 3413.930 kb on - strandat 3413.930 kb on - strandat 3413.985 kb on + strandat 3413.986 kb on - strandat 3413.996 kb on + strandat 3413.996 kb on + strandat 3413.996 kb on + strandat 3413.997 kb on - strandat 3413.997 kb on - strandat 3413.997 kb on - strandat 3413.999 kb on + strandat 3413.999 kb on + strandat 3413.999 kb on + strandat 3413.999 kb on + strandat 3413.999 kb on + strandat 3413.999 kb on + strandat 3414.000 kb on - strandat 3414.000 kb on - strandat 3414.000 kb on - strandat 3414.000 kb on - strandat 3414.000 kb on - strandat 3414.049 kb on + strandat 3414.049 kb on + strandat 3414.068 kb on + strandat 3414.068 kb on + strandat 3414.068 kb on + strandat 3414.068 kb on + strandat 3414.068 kb on + strandat 3414.068 kb on + strandat 3414.068 kb on + strandat 3414.068 kb on + strandat 3414.069 kb on - strandat 3414.069 kb on - strandat 3414.069 kb on - strandat 3414.069 kb on - strandat 3414.069 kb on - strandat 3414.069 kb on - strandat 3414.069 kb on - strandat 3414.069 kb on - strandat 3414.069 kb on - strandat 3414.072 kb on + strandat 3414.072 kb on + strandat 3414.072 kb on + strandat 3414.072 kb on + strandat 3414.072 kb on + strandat 3414.072 kb on + strandat 3414.072 kb on + strandat 3414.072 kb on + strandat 3414.072 kb on + strandat 3414.072 kb on + strandat 3414.072 kb on + strandat 3414.072 kb on + strandat 3414.072 kb on + strandat 3414.072 kb on + strandat 3414.072 kb on + strandat 3414.072 kb on + strandat 3414.072 kb on + strandat 3414.072 kb on + strandat 3414.072 kb on + strandat 3414.072 kb on + strandat 3414.072 kb on + strandat 3414.072 kb on + strandat 3414.072 kb on + strandat 3414.072 kb on + strandat 3414.073 kb on - strandat 3414.073 kb on - strandat 3414.073 kb on - strandat 3414.073 kb on - strandat 3414.073 kb on - strandat 3414.073 kb on - strandat 3414.073 kb on - strandat 3414.073 kb on - strandat 3414.073 kb on - strandat 3414.073 kb on - strandat 3414.073 kb on - strandat 3414.073 kb on - strandat 3414.073 kb on - strandat 3414.073 kb on - strandat 3414.073 kb on - strandat 3414.073 kb on - strandat 3414.073 kb on - strandat 3414.073 kb on - strandat 3414.073 kb on - strandat 3414.073 kb on - strandat 3414.073 kb on - strandat 3414.073 kb on - strandat 3414.073 kb on - strandat 3414.073 kb on - strandat 3414.074 kb on + strandat 3414.074 kb on + strandat 3414.074 kb on + strandat 3414.074 kb on + strandat 3414.074 kb on + strandat 3414.074 kb on + strandat 3414.074 kb on + strandat 3414.074 kb on + strandat 3414.074 kb on + strandat 3414.074 kb on + strandat 3414.074 kb on + strandat 3414.075 kb on - strandat 3414.075 kb on - strandat 3414.075 kb on - strandat 3414.075 kb on - strandat 3414.075 kb on - strandat 3414.075 kb on - strandat 3414.075 kb on - strandat 3414.075 kb on - strandat 3414.106 kb on + strandat 3414.106 kb on + strandat 3414.106 kb on + strandat 3414.106 kb on + strandat 3414.106 kb on + strandat 3414.107 kb on - strandat 3414.107 kb on - strandat 3414.107 kb on - strandat 3414.107 kb on - strandat 3414.107 kb on - strandat 3414.228 kb on + strand, within AO353_15445at 3414.228 kb on + strand, within AO353_15445at 3414.228 kb on + strandat 3414.229 kb on - strand, within AO353_15445at 3414.229 kb on - strand, within AO353_15445at 3414.282 kb on + strand, within AO353_15445at 3414.283 kb on - strand, within AO353_15445at 3414.414 kb on + strand, within AO353_15445at 3414.414 kb on + strand, within AO353_15445at 3414.415 kb on - strand, within AO353_15445at 3414.417 kb on - strand, within AO353_15445at 3414.678 kb on - strandat 3414.851 kb on + strandat 3414.852 kb on - strandat 3414.852 kb on - strandat 3414.852 kb on - strandat 3414.906 kb on + strandat 3414.928 kb on - strandat 3415.128 kb on + strandat 3415.130 kb on + strandat 3415.130 kb on + strandat 3415.130 kb on + strandat 3415.130 kb on + strandat 3415.130 kb on + strandat 3415.131 kb on - strandat 3415.131 kb on - strandat 3415.131 kb on - strandat 3415.131 kb on - strandat 3415.131 kb on - strandat 3415.131 kb on - strandat 3415.138 kb on + strandat 3415.138 kb on + strandat 3415.138 kb on + strandat 3415.138 kb on + strandat 3415.138 kb on + strandat 3415.138 kb on + strandat 3415.138 kb on + strandat 3415.138 kb on + strandat 3415.138 kb on + strandat 3415.138 kb on + strandat 3415.138 kb on + strandat 3415.138 kb on + strandat 3415.138 kb on + strandat 3415.138 kb on + strandat 3415.138 kb on + strandat 3415.138 kb on + strandat 3415.138 kb on + strandat 3415.138 kb on + strandat 3415.139 kb on - strandat 3415.139 kb on - strandat 3415.139 kb on - strandat 3415.139 kb on - strandat 3415.139 kb on - strandat 3415.139 kb on - strandat 3415.139 kb on - strandat 3415.139 kb on - strandat 3415.139 kb on - strandat 3415.139 kb on - strandat 3415.139 kb on - strandat 3415.139 kb on - strandat 3415.139 kb on - strandat 3415.139 kb on - strandat 3415.142 kb on + strandat 3415.142 kb on + strandat 3415.142 kb on + strandat 3415.142 kb on + strandat 3415.142 kb on + strandat 3415.142 kb on + strandat 3415.142 kb on + strandat 3415.142 kb on + strandat 3415.143 kb on - strandat 3415.143 kb on - strandat 3415.143 kb on - strandat 3415.143 kb on - strandat 3415.143 kb on - strandat 3415.143 kb on - strandat 3415.143 kb on - strandat 3415.146 kb on + strandat 3415.146 kb on + strandat 3415.146 kb on + strandat 3415.146 kb on + strandat 3415.146 kb on + strandat 3415.146 kb on + strandat 3415.146 kb on + strandat 3415.146 kb on + strandat 3415.147 kb on - strandat 3415.147 kb on - strandat 3415.147 kb on - strandat 3415.147 kb on - strandat 3415.279 kb on + strandat 3415.279 kb on + strandat 3415.280 kb on - strandat 3415.280 kb on - strandat 3415.280 kb on - strandat 3415.280 kb on - strandat 3415.280 kb on - strandat 3415.280 kb on - strandat 3415.307 kb on + strandat 3415.307 kb on + strandat 3415.307 kb on + strandat 3415.308 kb on - strandat 3415.370 kb on - strandat 3415.451 kb on - strandat 3415.451 kb on - strandat 3415.468 kb on + strandat 3415.469 kb on - strandat 3415.469 kb on - strandat 3415.479 kb on - strandat 3415.488 kb on + strandat 3415.489 kb on - strandat 3415.489 kb on - strandat 3415.489 kb on - strandat 3415.489 kb on - strandat 3415.491 kb on + strandat 3415.491 kb on + strandat 3415.491 kb on + strandat 3415.491 kb on + strandat 3415.491 kb on + strandat 3415.491 kb on + strandat 3415.491 kb on + strandat 3415.491 kb on + strandat 3415.491 kb on + strandat 3415.491 kb on + strandat 3415.492 kb on - strandat 3415.492 kb on - strandat 3415.492 kb on - strandat 3415.492 kb on - strandat 3415.492 kb on - strandat 3415.497 kb on + strandat 3415.498 kb on - strandat 3415.498 kb on - strandat 3415.498 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
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3,413,175 + AO353_15440 0.44 -0.3
3,413,175 + AO353_15440 0.44 +0.4
3,413,176 - AO353_15440 0.44 -1.2
3,413,176 - AO353_15440 0.44 +0.0
3,413,176 - AO353_15440 0.44 -0.8
3,413,226 + AO353_15440 0.48 -0.1
3,413,226 + AO353_15440 0.48 +0.4
3,413,226 + AO353_15440 0.48 -1.1
3,413,226 + AO353_15440 0.48 -0.1
3,413,226 + AO353_15440 0.48 +0.1
3,413,226 + AO353_15440 0.48 -1.5
3,413,226 + AO353_15440 0.48 -0.3
3,413,274 + AO353_15440 0.52 -1.8
3,413,274 + AO353_15440 0.52 +0.4
3,413,274 + AO353_15440 0.52 +0.7
3,413,274 + AO353_15440 0.52 -0.6
3,413,274 + AO353_15440 0.52 -1.2
3,413,275 - AO353_15440 0.52 -0.3
3,413,352 + AO353_15440 0.59 +0.8
3,413,352 + AO353_15440 0.59 -0.1
3,413,352 + AO353_15440 0.59 -0.3
3,413,353 - AO353_15440 0.59 -0.8
3,413,353 - AO353_15440 0.59 +0.2
3,413,353 - AO353_15440 0.59 -0.1
3,413,526 - AO353_15440 0.74 -1.7
3,413,613 + AO353_15440 0.81 -1.1
3,413,613 + AO353_15440 0.81 -1.2
3,413,613 + AO353_15440 0.81 +1.2
3,413,613 + AO353_15440 0.81 -1.6
3,413,613 + AO353_15440 0.81 +0.5
3,413,613 + AO353_15440 0.81 -0.8
3,413,614 - AO353_15440 0.81 -0.6
3,413,614 - AO353_15440 0.81 -0.1
3,413,614 - AO353_15440 0.81 -1.2
3,413,614 - AO353_15440 0.81 -0.8
3,413,614 - AO353_15440 0.81 -0.8
3,413,614 - AO353_15440 0.81 -0.5
3,413,614 - AO353_15440 0.81 +0.0
3,413,614 - AO353_15440 0.81 +0.4
3,413,721 + +0.6
3,413,721 + -2.7
3,413,721 + +1.2
3,413,721 + -1.2
3,413,722 - +0.9
3,413,722 - -0.6
3,413,722 - -0.5
3,413,722 - +0.9
3,413,722 - -1.3
3,413,722 - -0.3
3,413,722 - +1.2
3,413,835 + -0.2
3,413,835 + +0.9
3,413,835 + +0.2
3,413,835 + +1.5
3,413,835 + +0.8
3,413,836 - -0.1
3,413,836 - -0.6
3,413,836 - -0.5
3,413,836 - -2.0
3,413,841 + +1.5
3,413,842 - -1.9
3,413,842 - +0.2
3,413,842 - -0.6
3,413,890 + -1.5
3,413,891 - -0.5
3,413,909 + -0.9
3,413,909 + +0.2
3,413,909 + -0.3
3,413,909 + -0.8
3,413,909 + -0.9
3,413,909 + +2.2
3,413,910 - -2.3
3,413,915 + -1.2
3,413,915 + -0.5
3,413,915 + +0.4
3,413,915 + +0.8
3,413,915 + -2.5
3,413,929 + -0.1
3,413,929 + -0.8
3,413,930 - -0.4
3,413,930 - -0.6
3,413,985 + -1.0
3,413,986 - +0.5
3,413,996 + -0.7
3,413,996 + +0.2
3,413,996 + -0.5
3,413,997 - +0.8
3,413,997 - -0.7
3,413,997 - -1.7
3,413,999 + +1.0
3,413,999 + -0.5
3,413,999 + +0.2
3,413,999 + +1.8
3,413,999 + +1.8
3,413,999 + -1.2
3,414,000 - +1.4
3,414,000 - +0.1
3,414,000 - +1.2
3,414,000 - -0.6
3,414,000 - -0.5
3,414,049 + +1.2
3,414,049 + +0.0
3,414,068 + -1.8
3,414,068 + -0.8
3,414,068 + +1.7
3,414,068 + -0.5
3,414,068 + -0.6
3,414,068 + -0.8
3,414,068 + -1.7
3,414,068 + -0.1
3,414,069 - -0.3
3,414,069 - +2.6
3,414,069 - -0.3
3,414,069 - -0.1
3,414,069 - -0.7
3,414,069 - +0.2
3,414,069 - -0.5
3,414,069 - -0.3
3,414,069 - -1.8
3,414,072 + +0.2
3,414,072 + -0.3
3,414,072 + +0.3
3,414,072 + +1.7
3,414,072 + -0.3
3,414,072 + +0.7
3,414,072 + +1.1
3,414,072 + -1.4
3,414,072 + +0.4
3,414,072 + +0.0
3,414,072 + +0.7
3,414,072 + +0.9
3,414,072 + -2.1
3,414,072 + +1.0
3,414,072 + -0.5
3,414,072 + +0.1
3,414,072 + -2.0
3,414,072 + +0.2
3,414,072 + -0.1
3,414,072 + -0.5
3,414,072 + +0.7
3,414,072 + -0.5
3,414,072 + -0.2
3,414,072 + -0.6
3,414,073 - -0.4
3,414,073 - +0.3
3,414,073 - +1.7
3,414,073 - -0.1
3,414,073 - +0.1
3,414,073 - -1.2
3,414,073 - -1.8
3,414,073 - +2.6
3,414,073 - -0.2
3,414,073 - -0.9
3,414,073 - +0.4
3,414,073 - -0.3
3,414,073 - -1.1
3,414,073 - +1.6
3,414,073 - +0.2
3,414,073 - -0.2
3,414,073 - +0.3
3,414,073 - -0.1
3,414,073 - -0.4
3,414,073 - -1.8
3,414,073 - -0.8
3,414,073 - +0.9
3,414,073 - +0.7
3,414,073 - +0.4
3,414,074 + -1.2
3,414,074 + -1.2
3,414,074 + +0.7
3,414,074 + -0.3
3,414,074 + +0.1
3,414,074 + +1.1
3,414,074 + +1.0
3,414,074 + -1.2
3,414,074 + +0.2
3,414,074 + -0.1
3,414,074 + +0.5
3,414,075 - +2.2
3,414,075 - +1.7
3,414,075 - -1.2
3,414,075 - -1.2
3,414,075 - -0.5
3,414,075 - +1.0
3,414,075 - -1.6
3,414,075 - +1.0
3,414,106 + +0.7
3,414,106 + -1.3
3,414,106 + -0.7
3,414,106 + +0.7
3,414,106 + -0.8
3,414,107 - -0.1
3,414,107 - +0.1
3,414,107 - -0.8
3,414,107 - -0.3
3,414,107 - -0.0
3,414,228 + AO353_15445 0.18 -0.8
3,414,228 + AO353_15445 0.18 -0.2
3,414,228 + +0.2
3,414,229 - AO353_15445 0.18 -0.8
3,414,229 - AO353_15445 0.18 -0.9
3,414,282 + AO353_15445 0.28 -0.3
3,414,283 - AO353_15445 0.28 -1.1
3,414,414 + AO353_15445 0.54 +1.2
3,414,414 + AO353_15445 0.54 -0.1
3,414,415 - AO353_15445 0.54 +0.2
3,414,417 - AO353_15445 0.55 -0.6
3,414,678 - +0.1
3,414,851 + -2.1
3,414,852 - -0.0
3,414,852 - +1.7
3,414,852 - -1.9
3,414,906 + +0.5
3,414,928 - +0.2
3,415,128 + -1.1
3,415,130 + +2.2
3,415,130 + -0.6
3,415,130 + +1.7
3,415,130 + -0.1
3,415,130 + -0.9
3,415,131 - -1.2
3,415,131 - -1.5
3,415,131 - -0.4
3,415,131 - -0.7
3,415,131 - +0.8
3,415,131 - -0.9
3,415,138 + -0.3
3,415,138 + -0.7
3,415,138 + -1.2
3,415,138 + +0.1
3,415,138 + +0.7
3,415,138 + -0.1
3,415,138 + -0.6
3,415,138 + +0.7
3,415,138 + -0.1
3,415,138 + -0.6
3,415,138 + +1.2
3,415,138 + -0.0
3,415,138 + -0.4
3,415,138 + -0.3
3,415,138 + -0.1
3,415,138 + +1.4
3,415,138 + +1.1
3,415,138 + -2.8
3,415,139 - +1.1
3,415,139 - +1.7
3,415,139 - -0.1
3,415,139 - -0.1
3,415,139 - -1.3
3,415,139 - +0.2
3,415,139 - -0.8
3,415,139 - +1.0
3,415,139 - -0.1
3,415,139 - +2.2
3,415,139 - +1.7
3,415,139 - -0.3
3,415,139 - +1.4
3,415,139 - -0.1
3,415,142 + +0.2
3,415,142 + +0.3
3,415,142 + -1.3
3,415,142 + -0.1
3,415,142 + +0.7
3,415,142 + -0.9
3,415,142 + -1.1
3,415,142 + +0.2
3,415,143 - -0.3
3,415,143 - -0.1
3,415,143 - +1.1
3,415,143 - -0.6
3,415,143 - -0.6
3,415,143 - +0.9
3,415,143 - +0.4
3,415,146 + +0.7
3,415,146 + -0.7
3,415,146 + -0.3
3,415,146 + -0.2
3,415,146 + +1.8
3,415,146 + +1.0
3,415,146 + +1.1
3,415,146 + -0.8
3,415,147 - -0.5
3,415,147 - +0.9
3,415,147 - +1.2
3,415,147 - -0.9
3,415,279 + -0.7
3,415,279 + +0.8
3,415,280 - -2.0
3,415,280 - +1.2
3,415,280 - +1.1
3,415,280 - -0.3
3,415,280 - -0.1
3,415,280 - -0.1
3,415,307 + -1.5
3,415,307 + +1.0
3,415,307 + -1.0
3,415,308 - -0.1
3,415,370 - +0.6
3,415,451 - +0.4
3,415,451 - -0.1
3,415,468 + +0.8
3,415,469 - +0.9
3,415,469 - -0.2
3,415,479 - +1.8
3,415,488 + -0.3
3,415,489 - +0.1
3,415,489 - -0.1
3,415,489 - -0.1
3,415,489 - -1.9
3,415,491 + -1.0
3,415,491 + -0.1
3,415,491 + +2.2
3,415,491 + +0.1
3,415,491 + -0.6
3,415,491 + +0.2
3,415,491 + +1.2
3,415,491 + +2.2
3,415,491 + +0.2
3,415,491 + -0.6
3,415,492 - +1.7
3,415,492 - +2.2
3,415,492 - +0.2
3,415,492 - -1.5
3,415,492 - -0.1
3,415,497 + -0.3
3,415,498 - -0.5
3,415,498 - +0.4
3,415,498 - -0.5

Or see this region's nucleotide sequence