Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_14860

Experiment: L-Aspartic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_14850 and AO353_14855 are separated by 2 nucleotidesAO353_14855 and AO353_14860 are separated by 165 nucleotidesAO353_14860 and AO353_14865 are separated by 3 nucleotidesAO353_14865 and AO353_14870 are separated by 216 nucleotides AO353_14850: AO353_14850 - uracil transporter, at 3,286,955 to 3,288,229 _14850 AO353_14855: AO353_14855 - uracil phosphoribosyltransferase, at 3,288,232 to 3,288,870 _14855 AO353_14860: AO353_14860 - hypoxanthine-guanine phosphoribosyltransferase, at 3,289,036 to 3,289,593 _14860 AO353_14865: AO353_14865 - cupin, at 3,289,597 to 3,290,070 _14865 AO353_14870: AO353_14870 - ketoglutarate semialdehyde dehydrogenase, at 3,290,287 to 3,291,876 _14870 Position (kb) 3289 3290Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3288.131 kb on - strandat 3288.296 kb on + strand, within AO353_14855at 3288.297 kb on - strand, within AO353_14855at 3288.297 kb on - strand, within AO353_14855at 3288.297 kb on - strand, within AO353_14855at 3288.297 kb on - strand, within AO353_14855at 3288.297 kb on - strand, within AO353_14855at 3288.297 kb on - strand, within AO353_14855at 3288.335 kb on + strand, within AO353_14855at 3288.335 kb on + strand, within AO353_14855at 3288.335 kb on + strand, within AO353_14855at 3288.335 kb on + strand, within AO353_14855at 3288.335 kb on + strand, within AO353_14855at 3288.335 kb on + strand, within AO353_14855at 3288.336 kb on - strand, within AO353_14855at 3288.336 kb on - strand, within AO353_14855at 3288.336 kb on - strand, within AO353_14855at 3288.336 kb on - strand, within AO353_14855at 3288.336 kb on - strand, within AO353_14855at 3288.336 kb on - strand, within AO353_14855at 3288.336 kb on - strand, within AO353_14855at 3288.336 kb on - strand, within AO353_14855at 3288.336 kb on - strand, within AO353_14855at 3288.336 kb on - strand, within AO353_14855at 3288.336 kb on - strand, within AO353_14855at 3288.365 kb on - strand, within AO353_14855at 3288.533 kb on + strand, within AO353_14855at 3288.533 kb on + strand, within AO353_14855at 3288.533 kb on + strand, within AO353_14855at 3288.533 kb on + strand, within AO353_14855at 3288.533 kb on + strand, within AO353_14855at 3288.533 kb on + strand, within AO353_14855at 3288.533 kb on + strand, within AO353_14855at 3288.533 kb on + strand, within AO353_14855at 3288.533 kb on + strand, within AO353_14855at 3288.533 kb on + strand, within AO353_14855at 3288.533 kb on + strand, within AO353_14855at 3288.533 kb on + strand, within AO353_14855at 3288.534 kb on - strand, within AO353_14855at 3288.658 kb on - strand, within AO353_14855at 3288.658 kb on - strand, within AO353_14855at 3288.716 kb on + strand, within AO353_14855at 3288.716 kb on + strand, within AO353_14855at 3288.716 kb on + strand, within AO353_14855at 3288.716 kb on + strand, within AO353_14855at 3288.716 kb on + strand, within AO353_14855at 3288.716 kb on + strand, within AO353_14855at 3288.716 kb on + strand, within AO353_14855at 3288.716 kb on + strand, within AO353_14855at 3288.716 kb on + strand, within AO353_14855at 3288.717 kb on - strand, within AO353_14855at 3288.717 kb on - strand, within AO353_14855at 3288.717 kb on - strand, within AO353_14855at 3288.717 kb on - strand, within AO353_14855at 3288.749 kb on + strand, within AO353_14855at 3288.749 kb on + strand, within AO353_14855at 3288.749 kb on + strand, within AO353_14855at 3288.750 kb on - strand, within AO353_14855at 3288.801 kb on + strand, within AO353_14855at 3288.820 kb on - strandat 3288.907 kb on + strandat 3288.907 kb on + strandat 3288.907 kb on + strandat 3288.907 kb on + strandat 3288.908 kb on - strandat 3288.908 kb on - strandat 3288.912 kb on + strandat 3288.913 kb on - strandat 3288.913 kb on - strandat 3288.913 kb on - strandat 3288.913 kb on - strandat 3288.913 kb on - strandat 3288.913 kb on - strandat 3288.917 kb on + strandat 3288.917 kb on + strandat 3288.918 kb on - strandat 3288.918 kb on - strandat 3288.936 kb on - strandat 3288.936 kb on - strandat 3288.936 kb on - strandat 3288.937 kb on + strandat 3288.937 kb on + strandat 3288.937 kb on + strandat 3288.938 kb on - strandat 3288.938 kb on - strandat 3288.938 kb on - strandat 3288.938 kb on - strandat 3288.938 kb on - strandat 3288.938 kb on - strandat 3288.938 kb on - strandat 3288.938 kb on - strandat 3288.943 kb on + strandat 3288.943 kb on + strandat 3288.943 kb on + strandat 3288.943 kb on + strandat 3288.943 kb on + strandat 3288.943 kb on + strandat 3288.943 kb on + strandat 3288.943 kb on + strandat 3288.943 kb on + strandat 3288.943 kb on + strandat 3288.943 kb on + strandat 3288.943 kb on + strandat 3288.943 kb on + strandat 3288.943 kb on + strandat 3288.943 kb on + strandat 3288.943 kb on + strandat 3288.943 kb on + strandat 3288.943 kb on + strandat 3288.943 kb on + strandat 3288.943 kb on + strandat 3288.943 kb on + strandat 3288.943 kb on + strandat 3288.943 kb on + strandat 3288.943 kb on + strandat 3288.944 kb on - strandat 3288.944 kb on - strandat 3288.944 kb on - strandat 3288.944 kb on - strandat 3288.944 kb on - strandat 3288.944 kb on - strandat 3288.944 kb on - strandat 3288.944 kb on - strandat 3288.944 kb on - strandat 3288.944 kb on - strandat 3288.944 kb on - strandat 3288.944 kb on - strandat 3288.944 kb on - strandat 3288.944 kb on - strandat 3288.944 kb on - strandat 3288.944 kb on - strandat 3288.944 kb on - strandat 3288.944 kb on - strandat 3288.944 kb on - strandat 3288.948 kb on + strandat 3288.948 kb on + strandat 3288.948 kb on + strandat 3288.948 kb on + strandat 3288.948 kb on + strandat 3288.948 kb on + strandat 3288.948 kb on + strandat 3288.948 kb on + strandat 3288.948 kb on + strandat 3288.949 kb on - strandat 3288.949 kb on - strandat 3288.949 kb on - strandat 3288.949 kb on - strandat 3288.949 kb on - strandat 3288.949 kb on - strandat 3288.949 kb on - strandat 3288.949 kb on - strandat 3288.949 kb on - strandat 3288.990 kb on + strandat 3288.990 kb on + strandat 3288.990 kb on + strandat 3288.991 kb on - strandat 3288.991 kb on - strandat 3289.056 kb on + strandat 3289.090 kb on + strandat 3289.090 kb on + strandat 3289.158 kb on + strand, within AO353_14860at 3289.249 kb on + strand, within AO353_14860at 3289.249 kb on + strand, within AO353_14860at 3289.249 kb on + strand, within AO353_14860at 3289.250 kb on - strand, within AO353_14860at 3289.250 kb on - strand, within AO353_14860at 3289.250 kb on - strand, within AO353_14860at 3289.516 kb on + strand, within AO353_14860at 3289.516 kb on + strand, within AO353_14860at 3289.516 kb on + strand, within AO353_14860at 3289.540 kb on + strandat 3289.540 kb on + strandat 3289.540 kb on + strandat 3289.540 kb on + strandat 3289.540 kb on + strandat 3289.540 kb on + strandat 3289.540 kb on + strandat 3289.540 kb on + strandat 3289.540 kb on + strandat 3289.541 kb on - strandat 3289.541 kb on - strandat 3289.541 kb on - strandat 3289.550 kb on - strandat 3289.573 kb on + strandat 3289.573 kb on + strandat 3289.573 kb on + strandat 3289.573 kb on + strandat 3289.573 kb on + strandat 3289.574 kb on - strandat 3289.574 kb on - strandat 3289.591 kb on + strandat 3289.591 kb on + strandat 3289.591 kb on + strandat 3289.591 kb on + strandat 3289.591 kb on + strandat 3289.591 kb on + strandat 3289.591 kb on + strandat 3289.591 kb on + strandat 3289.591 kb on + strandat 3289.591 kb on + strandat 3289.591 kb on + strandat 3289.591 kb on + strandat 3289.591 kb on + strandat 3289.591 kb on + strandat 3289.592 kb on - strandat 3289.592 kb on - strandat 3289.592 kb on - strandat 3289.592 kb on - strandat 3289.592 kb on - strandat 3289.592 kb on - strandat 3289.592 kb on - strandat 3289.592 kb on - strandat 3289.632 kb on + strandat 3289.717 kb on - strand, within AO353_14865at 3289.744 kb on + strand, within AO353_14865at 3289.744 kb on + strand, within AO353_14865at 3289.744 kb on + strand, within AO353_14865at 3289.745 kb on - strand, within AO353_14865at 3289.745 kb on - strand, within AO353_14865at 3289.745 kb on - strand, within AO353_14865at 3289.745 kb on - strand, within AO353_14865at 3289.745 kb on - strand, within AO353_14865at 3289.745 kb on - strand, within AO353_14865at 3289.878 kb on + strand, within AO353_14865at 3289.878 kb on + strand, within AO353_14865at 3289.878 kb on + strand, within AO353_14865at 3289.879 kb on - strand, within AO353_14865at 3289.879 kb on - strand, within AO353_14865at 3289.879 kb on - strand, within AO353_14865at 3289.909 kb on + strand, within AO353_14865at 3289.910 kb on - strand, within AO353_14865at 3289.910 kb on - strand, within AO353_14865at 3289.925 kb on + strand, within AO353_14865at 3290.038 kb on + strandat 3290.038 kb on + strandat 3290.038 kb on + strandat 3290.039 kb on - strandat 3290.039 kb on - strandat 3290.133 kb on + strandat 3290.133 kb on + strandat 3290.133 kb on + strandat 3290.134 kb on - strandat 3290.134 kb on - strandat 3290.134 kb on - strandat 3290.148 kb on + strandat 3290.149 kb on - strandat 3290.149 kb on - strandat 3290.155 kb on + strandat 3290.155 kb on + strandat 3290.155 kb on + strandat 3290.155 kb on + strandat 3290.156 kb on - strandat 3290.156 kb on - strandat 3290.156 kb on - strandat 3290.156 kb on - strandat 3290.156 kb on - strandat 3290.162 kb on + strandat 3290.162 kb on + strandat 3290.162 kb on + strandat 3290.162 kb on + strandat 3290.162 kb on + strandat 3290.162 kb on + strandat 3290.162 kb on + strandat 3290.162 kb on + strandat 3290.162 kb on + strandat 3290.162 kb on + strandat 3290.163 kb on - strandat 3290.163 kb on - strandat 3290.163 kb on - strandat 3290.176 kb on - strandat 3290.288 kb on + strandat 3290.288 kb on + strandat 3290.288 kb on + strandat 3290.289 kb on - strandat 3290.289 kb on - strandat 3290.289 kb on - strandat 3290.289 kb on - strandat 3290.289 kb on - strandat 3290.289 kb on - strandat 3290.313 kb on + strandat 3290.314 kb on - strandat 3290.317 kb on + strandat 3290.317 kb on + strandat 3290.317 kb on + strandat 3290.317 kb on + strandat 3290.317 kb on + strandat 3290.317 kb on + strandat 3290.317 kb on + strandat 3290.318 kb on - strandat 3290.318 kb on - strandat 3290.318 kb on - strandat 3290.318 kb on - strandat 3290.318 kb on - strandat 3290.377 kb on + strandat 3290.400 kb on - strandat 3290.400 kb on - strandat 3290.448 kb on + strand, within AO353_14870at 3290.448 kb on + strand, within AO353_14870at 3290.449 kb on - strand, within AO353_14870at 3290.474 kb on + strand, within AO353_14870at 3290.475 kb on - strand, within AO353_14870at 3290.475 kb on - strand, within AO353_14870

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
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3,288,131 - -0.7
3,288,296 + AO353_14855 0.10 -0.5
3,288,297 - AO353_14855 0.10 -1.4
3,288,297 - AO353_14855 0.10 -1.0
3,288,297 - AO353_14855 0.10 -0.7
3,288,297 - AO353_14855 0.10 +0.7
3,288,297 - AO353_14855 0.10 -0.9
3,288,297 - AO353_14855 0.10 +1.0
3,288,335 + AO353_14855 0.16 -0.5
3,288,335 + AO353_14855 0.16 -0.4
3,288,335 + AO353_14855 0.16 -1.7
3,288,335 + AO353_14855 0.16 -0.1
3,288,335 + AO353_14855 0.16 +0.1
3,288,335 + AO353_14855 0.16 -0.5
3,288,336 - AO353_14855 0.16 -1.5
3,288,336 - AO353_14855 0.16 -1.0
3,288,336 - AO353_14855 0.16 -0.0
3,288,336 - AO353_14855 0.16 -1.0
3,288,336 - AO353_14855 0.16 -1.3
3,288,336 - AO353_14855 0.16 -1.2
3,288,336 - AO353_14855 0.16 -0.1
3,288,336 - AO353_14855 0.16 -0.0
3,288,336 - AO353_14855 0.16 +0.3
3,288,336 - AO353_14855 0.16 +0.1
3,288,336 - AO353_14855 0.16 +1.7
3,288,365 - AO353_14855 0.21 -2.8
3,288,533 + AO353_14855 0.47 -3.0
3,288,533 + AO353_14855 0.47 +1.8
3,288,533 + AO353_14855 0.47 -0.3
3,288,533 + AO353_14855 0.47 -0.5
3,288,533 + AO353_14855 0.47 +0.3
3,288,533 + AO353_14855 0.47 +0.3
3,288,533 + AO353_14855 0.47 -1.4
3,288,533 + AO353_14855 0.47 +0.7
3,288,533 + AO353_14855 0.47 -0.1
3,288,533 + AO353_14855 0.47 +0.4
3,288,533 + AO353_14855 0.47 -1.4
3,288,533 + AO353_14855 0.47 -0.5
3,288,534 - AO353_14855 0.47 +2.3
3,288,658 - AO353_14855 0.67 +1.0
3,288,658 - AO353_14855 0.67 +0.2
3,288,716 + AO353_14855 0.76 +0.1
3,288,716 + AO353_14855 0.76 -0.8
3,288,716 + AO353_14855 0.76 +2.0
3,288,716 + AO353_14855 0.76 -0.9
3,288,716 + AO353_14855 0.76 +0.5
3,288,716 + AO353_14855 0.76 +1.0
3,288,716 + AO353_14855 0.76 -1.5
3,288,716 + AO353_14855 0.76 +0.7
3,288,716 + AO353_14855 0.76 -1.7
3,288,717 - AO353_14855 0.76 -0.5
3,288,717 - AO353_14855 0.76 +1.7
3,288,717 - AO353_14855 0.76 -1.3
3,288,717 - AO353_14855 0.76 +0.6
3,288,749 + AO353_14855 0.81 +1.6
3,288,749 + AO353_14855 0.81 +0.3
3,288,749 + AO353_14855 0.81 -0.1
3,288,750 - AO353_14855 0.81 +0.6
3,288,801 + AO353_14855 0.89 -2.0
3,288,820 - +1.1
3,288,907 + -0.5
3,288,907 + -0.5
3,288,907 + -0.0
3,288,907 + -0.9
3,288,908 - -0.9
3,288,908 - -1.3
3,288,912 + +0.7
3,288,913 - +0.1
3,288,913 - +1.0
3,288,913 - -0.9
3,288,913 - +0.7
3,288,913 - -0.6
3,288,913 - -0.3
3,288,917 + -1.1
3,288,917 + +0.2
3,288,918 - +0.7
3,288,918 - -0.3
3,288,936 - -1.0
3,288,936 - -1.1
3,288,936 - +0.5
3,288,937 + +0.3
3,288,937 + +1.1
3,288,937 + -0.3
3,288,938 - +1.0
3,288,938 - -0.5
3,288,938 - +0.1
3,288,938 - +1.3
3,288,938 - -0.0
3,288,938 - -2.2
3,288,938 - -1.0
3,288,938 - -0.4
3,288,943 + +0.6
3,288,943 + +0.3
3,288,943 + -0.7
3,288,943 + -1.3
3,288,943 + -0.7
3,288,943 + -0.7
3,288,943 + +0.3
3,288,943 + -0.1
3,288,943 + -0.7
3,288,943 + +0.7
3,288,943 + +0.4
3,288,943 + -1.1
3,288,943 + -0.7
3,288,943 + -0.6
3,288,943 + -1.1
3,288,943 + -1.2
3,288,943 + -0.4
3,288,943 + +0.7
3,288,943 + -0.1
3,288,943 + -0.5
3,288,943 + -0.3
3,288,943 + -0.6
3,288,943 + +1.6
3,288,943 + +0.2
3,288,944 - -2.2
3,288,944 - +0.2
3,288,944 - +1.3
3,288,944 - +0.4
3,288,944 - +0.1
3,288,944 - -0.4
3,288,944 - -0.0
3,288,944 - +1.3
3,288,944 - -0.3
3,288,944 - +0.7
3,288,944 - +0.6
3,288,944 - -1.0
3,288,944 - -0.9
3,288,944 - -1.4
3,288,944 - +1.1
3,288,944 - -0.9
3,288,944 - -0.3
3,288,944 - +1.1
3,288,944 - -0.6
3,288,948 + -0.6
3,288,948 + -2.4
3,288,948 + +1.5
3,288,948 + -1.0
3,288,948 + -1.3
3,288,948 + +0.1
3,288,948 + +0.4
3,288,948 + -0.0
3,288,948 + -0.5
3,288,949 - -1.6
3,288,949 - +0.7
3,288,949 - -1.3
3,288,949 - -0.7
3,288,949 - -0.3
3,288,949 - -0.3
3,288,949 - -1.3
3,288,949 - -0.3
3,288,949 - +0.9
3,288,990 + +0.4
3,288,990 + -0.9
3,288,990 + +0.3
3,288,991 - +0.1
3,288,991 - -0.5
3,289,056 + +0.9
3,289,090 + -0.8
3,289,090 + +1.1
3,289,158 + AO353_14860 0.22 +0.6
3,289,249 + AO353_14860 0.38 +0.2
3,289,249 + AO353_14860 0.38 +1.7
3,289,249 + AO353_14860 0.38 -0.4
3,289,250 - AO353_14860 0.38 +0.5
3,289,250 - AO353_14860 0.38 -0.6
3,289,250 - AO353_14860 0.38 +1.6
3,289,516 + AO353_14860 0.86 -0.0
3,289,516 + AO353_14860 0.86 +0.4
3,289,516 + AO353_14860 0.86 -0.6
3,289,540 + +0.7
3,289,540 + -0.3
3,289,540 + -1.5
3,289,540 + -0.9
3,289,540 + +0.9
3,289,540 + -0.0
3,289,540 + +0.7
3,289,540 + -1.8
3,289,540 + -0.5
3,289,541 - +0.3
3,289,541 - -0.6
3,289,541 - -0.3
3,289,550 - -1.0
3,289,573 + +0.5
3,289,573 + -1.3
3,289,573 + -0.3
3,289,573 + -0.7
3,289,573 + -0.7
3,289,574 - -0.4
3,289,574 - +0.3
3,289,591 + -0.7
3,289,591 + -0.5
3,289,591 + -0.5
3,289,591 + -1.1
3,289,591 + -0.4
3,289,591 + +0.3
3,289,591 + -0.2
3,289,591 + -0.5
3,289,591 + -0.1
3,289,591 + -0.6
3,289,591 + +0.7
3,289,591 + -0.3
3,289,591 + -0.8
3,289,591 + -0.0
3,289,592 - -0.2
3,289,592 - +0.7
3,289,592 - +0.4
3,289,592 - +0.3
3,289,592 - +0.6
3,289,592 - +0.3
3,289,592 - -1.3
3,289,592 - -0.7
3,289,632 + -0.7
3,289,717 - AO353_14865 0.25 -0.9
3,289,744 + AO353_14865 0.31 -0.4
3,289,744 + AO353_14865 0.31 -1.0
3,289,744 + AO353_14865 0.31 +0.4
3,289,745 - AO353_14865 0.31 -1.1
3,289,745 - AO353_14865 0.31 +0.7
3,289,745 - AO353_14865 0.31 +0.2
3,289,745 - AO353_14865 0.31 -0.6
3,289,745 - AO353_14865 0.31 -0.6
3,289,745 - AO353_14865 0.31 -0.3
3,289,878 + AO353_14865 0.59 -0.5
3,289,878 + AO353_14865 0.59 +0.5
3,289,878 + AO353_14865 0.59 +0.1
3,289,879 - AO353_14865 0.59 +0.6
3,289,879 - AO353_14865 0.59 +1.0
3,289,879 - AO353_14865 0.59 +1.1
3,289,909 + AO353_14865 0.66 +1.0
3,289,910 - AO353_14865 0.66 -0.5
3,289,910 - AO353_14865 0.66 -1.3
3,289,925 + AO353_14865 0.69 -1.3
3,290,038 + +0.7
3,290,038 + +0.9
3,290,038 + -0.3
3,290,039 - -0.6
3,290,039 - -0.5
3,290,133 + +1.7
3,290,133 + -0.6
3,290,133 + +0.5
3,290,134 - -0.8
3,290,134 - +0.3
3,290,134 - -0.7
3,290,148 + +0.1
3,290,149 - +1.0
3,290,149 - -0.8
3,290,155 + -2.0
3,290,155 + +0.3
3,290,155 + -1.9
3,290,155 + -0.2
3,290,156 - -0.0
3,290,156 - +1.7
3,290,156 - +0.7
3,290,156 - +0.4
3,290,156 - +0.6
3,290,162 + -1.6
3,290,162 + -1.9
3,290,162 + -3.4
3,290,162 + -0.3
3,290,162 + -1.7
3,290,162 + -0.0
3,290,162 + +0.6
3,290,162 + -0.0
3,290,162 + -0.8
3,290,162 + +0.3
3,290,163 - -0.2
3,290,163 - +0.1
3,290,163 - +0.1
3,290,176 - -0.5
3,290,288 + +3.9
3,290,288 + +0.8
3,290,288 + -0.0
3,290,289 - +0.3
3,290,289 - -1.7
3,290,289 - +0.3
3,290,289 - +1.1
3,290,289 - -0.1
3,290,289 - -1.1
3,290,313 + +1.3
3,290,314 - -0.6
3,290,317 + +0.4
3,290,317 + +0.6
3,290,317 + -0.6
3,290,317 + -1.5
3,290,317 + +1.3
3,290,317 + +1.1
3,290,317 + -0.8
3,290,318 - +1.6
3,290,318 - +0.2
3,290,318 - +0.1
3,290,318 - -0.8
3,290,318 - -0.4
3,290,377 + -0.3
3,290,400 - +0.3
3,290,400 - -1.1
3,290,448 + AO353_14870 0.10 +1.7
3,290,448 + AO353_14870 0.10 -0.9
3,290,449 - AO353_14870 0.10 +1.6
3,290,474 + AO353_14870 0.12 -1.4
3,290,475 - AO353_14870 0.12 +0.7
3,290,475 - AO353_14870 0.12 +1.4

Or see this region's nucleotide sequence