Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_14400

Experiment: L-Aspartic Acid (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_14395 and AO353_14400 are separated by 712 nucleotidesAO353_14400 and AO353_14405 are separated by 22 nucleotides AO353_14395: AO353_14395 - poly(A) polymerase, at 3,191,183 to 3,192,586 _14395 AO353_14400: AO353_14400 - Fis family transcriptional regulator, at 3,193,299 to 3,194,732 _14400 AO353_14405: AO353_14405 - ATPase, at 3,194,755 to 3,197,703 _14405 Position (kb) 3193 3194 3195Strain fitness (log2 ratio) -2 -1 0 1 2at 3192.314 kb on - strand, within AO353_14395at 3192.314 kb on - strand, within AO353_14395at 3192.314 kb on - strand, within AO353_14395at 3192.542 kb on - strandat 3192.653 kb on - strandat 3192.653 kb on - strandat 3192.653 kb on - strandat 3192.653 kb on - strandat 3192.653 kb on - strandat 3192.653 kb on - strandat 3192.653 kb on - strandat 3192.659 kb on + strandat 3192.660 kb on - strandat 3192.660 kb on - strandat 3192.660 kb on - strandat 3192.675 kb on + strandat 3192.675 kb on + strandat 3192.675 kb on + strandat 3192.675 kb on + strandat 3192.675 kb on + strandat 3192.675 kb on + strandat 3192.676 kb on - strandat 3192.676 kb on - strandat 3192.676 kb on - strandat 3192.699 kb on - strandat 3192.736 kb on + strandat 3192.736 kb on + strandat 3192.736 kb on + strandat 3192.736 kb on + strandat 3192.736 kb on + strandat 3192.737 kb on - strandat 3192.737 kb on - strandat 3192.737 kb on - strandat 3192.737 kb on - strandat 3192.737 kb on - strandat 3192.737 kb on - strandat 3192.765 kb on + strandat 3192.765 kb on + strandat 3192.765 kb on + strandat 3192.765 kb on + strandat 3192.765 kb on + strandat 3192.766 kb on - strandat 3192.766 kb on - strandat 3192.766 kb on - strandat 3192.766 kb on - strandat 3192.766 kb on - strandat 3192.766 kb on - strandat 3192.766 kb on - strandat 3192.766 kb on - strandat 3192.766 kb on - strandat 3192.766 kb on - strandat 3192.778 kb on + strandat 3192.779 kb on - strandat 3192.779 kb on - strandat 3192.785 kb on - strandat 3192.785 kb on - strandat 3192.937 kb on - strandat 3192.984 kb on + strandat 3192.984 kb on + strandat 3192.985 kb on - strandat 3192.985 kb on - strandat 3192.985 kb on - strandat 3192.985 kb on - strandat 3192.985 kb on - strandat 3192.985 kb on - strandat 3193.010 kb on + strandat 3193.010 kb on + strandat 3193.011 kb on - strandat 3193.011 kb on - strandat 3193.011 kb on - strandat 3193.014 kb on + strandat 3193.015 kb on - strandat 3193.061 kb on + strandat 3193.062 kb on - strandat 3193.062 kb on - strandat 3193.067 kb on + strandat 3193.067 kb on + strandat 3193.068 kb on - strandat 3193.068 kb on - strandat 3193.068 kb on - strandat 3193.068 kb on - strandat 3193.089 kb on + strandat 3193.089 kb on + strandat 3193.090 kb on - strandat 3193.101 kb on - strandat 3193.101 kb on - strandat 3193.109 kb on + strandat 3193.109 kb on + strandat 3193.110 kb on - strandat 3193.110 kb on - strandat 3193.110 kb on - strandat 3193.110 kb on - strandat 3193.110 kb on - strandat 3193.110 kb on - strandat 3193.111 kb on + strandat 3193.111 kb on + strandat 3193.146 kb on - strandat 3193.159 kb on - strandat 3193.159 kb on - strandat 3193.212 kb on + strandat 3193.213 kb on - strandat 3193.229 kb on + strandat 3193.274 kb on + strandat 3193.275 kb on - strandat 3193.447 kb on + strandat 3193.448 kb on - strand, within AO353_14400at 3193.448 kb on - strand, within AO353_14400at 3193.657 kb on + strand, within AO353_14400at 3193.657 kb on + strand, within AO353_14400at 3193.658 kb on - strand, within AO353_14400at 3193.813 kb on + strand, within AO353_14400at 3193.814 kb on - strand, within AO353_14400at 3193.816 kb on + strand, within AO353_14400at 3193.817 kb on - strand, within AO353_14400at 3193.817 kb on - strand, within AO353_14400at 3193.817 kb on - strand, within AO353_14400at 3193.887 kb on + strand, within AO353_14400at 3193.888 kb on - strand, within AO353_14400at 3193.888 kb on - strand, within AO353_14400at 3194.217 kb on + strand, within AO353_14400at 3194.217 kb on + strand, within AO353_14400at 3194.218 kb on - strand, within AO353_14400at 3194.449 kb on + strand, within AO353_14400at 3194.500 kb on + strand, within AO353_14400at 3194.663 kb on + strandat 3194.664 kb on - strandat 3194.664 kb on - strandat 3194.861 kb on + strandat 3195.092 kb on - strand, within AO353_14405at 3195.092 kb on - strand, within AO353_14405at 3195.092 kb on - strand, within AO353_14405at 3195.092 kb on - strand, within AO353_14405at 3195.515 kb on - strand, within AO353_14405at 3195.515 kb on - strand, within AO353_14405at 3195.515 kb on - strand, within AO353_14405

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
remove
3,192,314 - AO353_14395 0.81 +0.3
3,192,314 - AO353_14395 0.81 -0.5
3,192,314 - AO353_14395 0.81 +0.8
3,192,542 - -1.8
3,192,653 - -1.6
3,192,653 - +0.1
3,192,653 - +0.8
3,192,653 - +0.3
3,192,653 - -1.1
3,192,653 - +1.0
3,192,653 - +1.0
3,192,659 + +0.3
3,192,660 - +0.8
3,192,660 - -0.9
3,192,660 - +1.3
3,192,675 + -0.5
3,192,675 + +1.3
3,192,675 + +0.9
3,192,675 + -0.5
3,192,675 + +0.4
3,192,675 + +2.3
3,192,676 - -1.2
3,192,676 - +0.3
3,192,676 - +2.3
3,192,699 - -0.8
3,192,736 + +1.3
3,192,736 + -1.7
3,192,736 + -0.5
3,192,736 + -0.0
3,192,736 + -0.2
3,192,737 - -0.2
3,192,737 - -0.2
3,192,737 - -0.2
3,192,737 - +1.9
3,192,737 - -1.2
3,192,737 - +0.3
3,192,765 + -1.2
3,192,765 + +1.9
3,192,765 + -0.7
3,192,765 + -0.1
3,192,765 + -0.9
3,192,766 - -0.4
3,192,766 - -1.6
3,192,766 - +1.9
3,192,766 - +0.8
3,192,766 - -0.3
3,192,766 - +0.8
3,192,766 - -0.8
3,192,766 - -0.5
3,192,766 - +0.4
3,192,766 - +0.3
3,192,778 + -1.3
3,192,779 - -1.0
3,192,779 - -0.2
3,192,785 - -1.0
3,192,785 - +0.8
3,192,937 - +0.6
3,192,984 + +0.0
3,192,984 + -0.5
3,192,985 - -0.9
3,192,985 - -0.8
3,192,985 - -0.5
3,192,985 - -1.1
3,192,985 - -2.6
3,192,985 - +1.0
3,193,010 + +0.3
3,193,010 + -0.5
3,193,011 - -1.0
3,193,011 - +0.3
3,193,011 - -0.1
3,193,014 + +0.1
3,193,015 - -1.4
3,193,061 + +0.9
3,193,062 - -1.6
3,193,062 - +0.5
3,193,067 + +0.6
3,193,067 + +0.3
3,193,068 - -0.8
3,193,068 - -0.1
3,193,068 - -1.1
3,193,068 - -0.5
3,193,089 + -0.1
3,193,089 + +0.3
3,193,090 - +0.0
3,193,101 - -0.2
3,193,101 - -0.0
3,193,109 + -1.5
3,193,109 + -1.6
3,193,110 - -0.8
3,193,110 - -0.2
3,193,110 - -1.1
3,193,110 - +1.3
3,193,110 - -1.7
3,193,110 - -0.8
3,193,111 + -1.6
3,193,111 + +1.3
3,193,146 - -0.5
3,193,159 - -2.1
3,193,159 - -0.5
3,193,212 + -0.3
3,193,213 - +0.2
3,193,229 + -0.4
3,193,274 + +1.3
3,193,275 - -2.1
3,193,447 + +1.3
3,193,448 - AO353_14400 0.10 -1.4
3,193,448 - AO353_14400 0.10 -1.6
3,193,657 + AO353_14400 0.25 -1.0
3,193,657 + AO353_14400 0.25 -1.8
3,193,658 - AO353_14400 0.25 +0.0
3,193,813 + AO353_14400 0.36 -2.0
3,193,814 - AO353_14400 0.36 -0.5
3,193,816 + AO353_14400 0.36 +0.3
3,193,817 - AO353_14400 0.36 -0.5
3,193,817 - AO353_14400 0.36 -0.2
3,193,817 - AO353_14400 0.36 +0.8
3,193,887 + AO353_14400 0.41 +0.0
3,193,888 - AO353_14400 0.41 -0.2
3,193,888 - AO353_14400 0.41 -1.5
3,194,217 + AO353_14400 0.64 -1.0
3,194,217 + AO353_14400 0.64 -1.0
3,194,218 - AO353_14400 0.64 -1.2
3,194,449 + AO353_14400 0.80 -0.7
3,194,500 + AO353_14400 0.84 -1.0
3,194,663 + +0.0
3,194,664 - +0.0
3,194,664 - -0.7
3,194,861 + +0.0
3,195,092 - AO353_14405 0.11 -0.8
3,195,092 - AO353_14405 0.11 +0.9
3,195,092 - AO353_14405 0.11 -0.7
3,195,092 - AO353_14405 0.11 -0.1
3,195,515 - AO353_14405 0.26 -1.9
3,195,515 - AO353_14405 0.26 -0.2
3,195,515 - AO353_14405 0.26 -1.2

Or see this region's nucleotide sequence