Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_14220

Experiment: L-Aspartic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_14215 and AO353_14220 are separated by 152 nucleotidesAO353_14220 and AO353_14225 overlap by 4 nucleotidesAO353_14225 and AO353_14230 are separated by 129 nucleotides AO353_14215: AO353_14215 - DNA transporter, at 3,156,408 to 3,157,424 _14215 AO353_14220: AO353_14220 - ribosomal large subunit pseudouridine synthase D, at 3,157,577 to 3,158,539 _14220 AO353_14225: AO353_14225 - laccase, at 3,158,536 to 3,159,261 _14225 AO353_14230: AO353_14230 - ATP-dependent chaperone ClpB, at 3,159,391 to 3,161,955 _14230 Position (kb) 3157 3158 3159Strain fitness (log2 ratio) -2 -1 0 1 2at 3157.441 kb on - strandat 3157.441 kb on - strandat 3157.476 kb on - strandat 3157.476 kb on - strandat 3157.520 kb on - strandat 3157.520 kb on - strandat 3157.524 kb on - strandat 3157.567 kb on + strandat 3157.567 kb on + strandat 3157.567 kb on + strandat 3157.657 kb on - strandat 3157.835 kb on + strand, within AO353_14220at 3158.085 kb on - strand, within AO353_14220at 3158.270 kb on - strand, within AO353_14220at 3158.579 kb on + strandat 3158.579 kb on + strandat 3158.580 kb on - strandat 3158.712 kb on + strand, within AO353_14225at 3158.749 kb on - strand, within AO353_14225at 3158.758 kb on + strand, within AO353_14225at 3158.758 kb on + strand, within AO353_14225at 3158.758 kb on + strand, within AO353_14225at 3158.758 kb on + strand, within AO353_14225at 3158.758 kb on + strand, within AO353_14225at 3158.759 kb on - strand, within AO353_14225at 3158.759 kb on - strand, within AO353_14225at 3158.823 kb on + strand, within AO353_14225at 3158.823 kb on + strand, within AO353_14225at 3158.824 kb on - strand, within AO353_14225at 3158.824 kb on - strand, within AO353_14225at 3158.954 kb on + strand, within AO353_14225at 3159.098 kb on + strand, within AO353_14225at 3159.099 kb on - strand, within AO353_14225at 3159.112 kb on + strand, within AO353_14225at 3159.112 kb on + strand, within AO353_14225at 3159.112 kb on + strand, within AO353_14225at 3159.112 kb on + strand, within AO353_14225at 3159.112 kb on + strand, within AO353_14225at 3159.112 kb on + strand, within AO353_14225at 3159.112 kb on + strand, within AO353_14225at 3159.112 kb on + strand, within AO353_14225at 3159.112 kb on + strand, within AO353_14225at 3159.112 kb on + strand, within AO353_14225at 3159.112 kb on + strand, within AO353_14225at 3159.112 kb on + strand, within AO353_14225at 3159.112 kb on + strand, within AO353_14225at 3159.112 kb on + strand, within AO353_14225at 3159.112 kb on + strand, within AO353_14225at 3159.112 kb on + strand, within AO353_14225at 3159.112 kb on + strand, within AO353_14225at 3159.112 kb on + strand, within AO353_14225at 3159.112 kb on + strand, within AO353_14225at 3159.112 kb on + strand, within AO353_14225at 3159.112 kb on + strand, within AO353_14225at 3159.112 kb on + strand, within AO353_14225at 3159.113 kb on - strand, within AO353_14225at 3159.113 kb on - strand, within AO353_14225at 3159.113 kb on - strand, within AO353_14225at 3159.113 kb on - strand, within AO353_14225at 3159.113 kb on - strand, within AO353_14225at 3159.113 kb on - strand, within AO353_14225at 3159.113 kb on - strand, within AO353_14225at 3159.113 kb on - strand, within AO353_14225at 3159.113 kb on - strand, within AO353_14225at 3159.113 kb on - strand, within AO353_14225at 3159.113 kb on - strand, within AO353_14225at 3159.113 kb on - strand, within AO353_14225at 3159.113 kb on - strand, within AO353_14225at 3159.113 kb on - strand, within AO353_14225at 3159.113 kb on - strand, within AO353_14225at 3159.113 kb on - strand, within AO353_14225at 3159.113 kb on - strand, within AO353_14225at 3159.114 kb on + strand, within AO353_14225at 3159.114 kb on + strand, within AO353_14225at 3159.114 kb on + strand, within AO353_14225at 3159.114 kb on + strand, within AO353_14225at 3159.114 kb on + strand, within AO353_14225at 3159.114 kb on + strand, within AO353_14225at 3159.115 kb on - strand, within AO353_14225at 3159.115 kb on - strand, within AO353_14225at 3159.150 kb on + strand, within AO353_14225at 3159.151 kb on - strand, within AO353_14225at 3159.151 kb on - strand, within AO353_14225at 3159.161 kb on - strand, within AO353_14225at 3159.265 kb on + strandat 3159.265 kb on + strandat 3159.265 kb on + strandat 3159.265 kb on + strandat 3159.266 kb on - strandat 3159.266 kb on - strandat 3159.266 kb on - strandat 3159.266 kb on - strandat 3159.266 kb on - strandat 3159.266 kb on - strandat 3159.319 kb on + strandat 3159.320 kb on - strandat 3159.320 kb on - strandat 3159.344 kb on + strandat 3159.344 kb on + strandat 3159.344 kb on + strandat 3159.345 kb on - strandat 3159.345 kb on - strandat 3159.348 kb on + strandat 3159.348 kb on + strandat 3159.348 kb on + strandat 3159.349 kb on - strandat 3159.349 kb on - strandat 3159.349 kb on - strandat 3159.349 kb on - strandat 3159.349 kb on - strandat 3159.349 kb on - strandat 3159.397 kb on - strandat 3159.397 kb on - strandat 3159.397 kb on - strandat 3159.397 kb on - strandat 3159.397 kb on - strandat 3159.398 kb on + strandat 3159.398 kb on + strandat 3159.398 kb on + strandat 3159.398 kb on + strandat 3159.398 kb on + strandat 3159.398 kb on + strandat 3159.399 kb on - strandat 3159.408 kb on - strandat 3159.414 kb on + strandat 3159.415 kb on - strandat 3159.426 kb on - strandat 3159.426 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
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3,157,441 - -0.4
3,157,441 - +0.6
3,157,476 - +0.0
3,157,476 - +0.8
3,157,520 - +2.0
3,157,520 - +0.3
3,157,524 - +0.3
3,157,567 + -0.5
3,157,567 + -1.0
3,157,567 + -0.0
3,157,657 - +0.8
3,157,835 + AO353_14220 0.27 -1.1
3,158,085 - AO353_14220 0.53 +0.2
3,158,270 - AO353_14220 0.72 +0.3
3,158,579 + -2.0
3,158,579 + +0.8
3,158,580 - +0.1
3,158,712 + AO353_14225 0.24 -0.2
3,158,749 - AO353_14225 0.29 -0.5
3,158,758 + AO353_14225 0.31 -0.7
3,158,758 + AO353_14225 0.31 +0.4
3,158,758 + AO353_14225 0.31 -0.2
3,158,758 + AO353_14225 0.31 +0.1
3,158,758 + AO353_14225 0.31 +0.6
3,158,759 - AO353_14225 0.31 +0.0
3,158,759 - AO353_14225 0.31 -0.5
3,158,823 + AO353_14225 0.40 +0.3
3,158,823 + AO353_14225 0.40 -1.8
3,158,824 - AO353_14225 0.40 -0.7
3,158,824 - AO353_14225 0.40 +0.0
3,158,954 + AO353_14225 0.58 -0.7
3,159,098 + AO353_14225 0.77 +0.0
3,159,099 - AO353_14225 0.78 -0.1
3,159,112 + AO353_14225 0.79 -2.0
3,159,112 + AO353_14225 0.79 +0.8
3,159,112 + AO353_14225 0.79 +0.8
3,159,112 + AO353_14225 0.79 -0.5
3,159,112 + AO353_14225 0.79 +2.2
3,159,112 + AO353_14225 0.79 +0.8
3,159,112 + AO353_14225 0.79 -0.1
3,159,112 + AO353_14225 0.79 -1.6
3,159,112 + AO353_14225 0.79 +0.3
3,159,112 + AO353_14225 0.79 +0.3
3,159,112 + AO353_14225 0.79 +0.3
3,159,112 + AO353_14225 0.79 +0.9
3,159,112 + AO353_14225 0.79 +1.8
3,159,112 + AO353_14225 0.79 +0.0
3,159,112 + AO353_14225 0.79 -1.3
3,159,112 + AO353_14225 0.79 +0.3
3,159,112 + AO353_14225 0.79 -1.5
3,159,112 + AO353_14225 0.79 +0.8
3,159,112 + AO353_14225 0.79 +1.3
3,159,112 + AO353_14225 0.79 -0.5
3,159,112 + AO353_14225 0.79 +0.3
3,159,112 + AO353_14225 0.79 -1.5
3,159,113 - AO353_14225 0.79 +1.0
3,159,113 - AO353_14225 0.79 +0.5
3,159,113 - AO353_14225 0.79 +1.5
3,159,113 - AO353_14225 0.79 -0.2
3,159,113 - AO353_14225 0.79 -0.8
3,159,113 - AO353_14225 0.79 -1.0
3,159,113 - AO353_14225 0.79 -1.6
3,159,113 - AO353_14225 0.79 +1.0
3,159,113 - AO353_14225 0.79 +0.2
3,159,113 - AO353_14225 0.79 -1.9
3,159,113 - AO353_14225 0.79 +0.8
3,159,113 - AO353_14225 0.79 +1.0
3,159,113 - AO353_14225 0.79 -0.2
3,159,113 - AO353_14225 0.79 -1.4
3,159,113 - AO353_14225 0.79 -0.9
3,159,113 - AO353_14225 0.79 -1.9
3,159,113 - AO353_14225 0.79 -0.4
3,159,114 + AO353_14225 0.80 +0.3
3,159,114 + AO353_14225 0.80 -1.2
3,159,114 + AO353_14225 0.80 -0.1
3,159,114 + AO353_14225 0.80 -1.0
3,159,114 + AO353_14225 0.80 -0.8
3,159,114 + AO353_14225 0.80 +0.5
3,159,115 - AO353_14225 0.80 +0.5
3,159,115 - AO353_14225 0.80 +0.3
3,159,150 + AO353_14225 0.85 +0.1
3,159,151 - AO353_14225 0.85 -0.2
3,159,151 - AO353_14225 0.85 -0.8
3,159,161 - AO353_14225 0.86 -1.5
3,159,265 + +1.2
3,159,265 + -0.2
3,159,265 + -0.3
3,159,265 + -0.2
3,159,266 - -0.0
3,159,266 - +1.0
3,159,266 - -1.4
3,159,266 - -0.9
3,159,266 - +0.2
3,159,266 - -0.4
3,159,319 + +2.3
3,159,320 - +0.5
3,159,320 - -0.7
3,159,344 + +0.5
3,159,344 + -0.5
3,159,344 + +0.8
3,159,345 - -1.8
3,159,345 - -0.2
3,159,348 + +0.0
3,159,348 + +0.1
3,159,348 + +0.8
3,159,349 - +0.7
3,159,349 - +1.0
3,159,349 - -0.7
3,159,349 - +1.1
3,159,349 - -1.2
3,159,349 - -1.2
3,159,397 - -0.7
3,159,397 - +0.9
3,159,397 - +0.3
3,159,397 - +0.2
3,159,397 - -0.7
3,159,398 + -1.0
3,159,398 + +1.0
3,159,398 + +1.2
3,159,398 + +0.5
3,159,398 + -0.1
3,159,398 + +0.5
3,159,399 - -0.4
3,159,408 - -1.4
3,159,414 + -1.6
3,159,415 - +2.3
3,159,426 - -0.1
3,159,426 - +2.3

Or see this region's nucleotide sequence