Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_13140

Experiment: L-Aspartic Acid (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_13135 and AO353_13140 overlap by 1 nucleotidesAO353_13140 and AO353_13145 are separated by 93 nucleotidesAO353_13145 and AO353_13150 are separated by 12 nucleotides AO353_13135: AO353_13135 - DNA mismatch repair protein, at 2,910,613 to 2,912,523 _13135 AO353_13140: AO353_13140 - tRNA dimethylallyltransferase, at 2,912,523 to 2,913,494 _13140 AO353_13145: AO353_13145 - RNA-binding protein, at 2,913,588 to 2,913,848 _13145 AO353_13150: AO353_13150 - GTPase HflX, at 2,913,861 to 2,915,162 _13150 Position (kb) 2912 2913 2914Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2911.600 kb on + strand, within AO353_13135at 2911.600 kb on + strand, within AO353_13135at 2911.600 kb on + strand, within AO353_13135at 2911.601 kb on - strand, within AO353_13135at 2911.601 kb on - strand, within AO353_13135at 2911.601 kb on - strand, within AO353_13135at 2911.673 kb on + strand, within AO353_13135at 2911.673 kb on + strand, within AO353_13135at 2911.776 kb on + strand, within AO353_13135at 2911.776 kb on + strand, within AO353_13135at 2911.777 kb on - strand, within AO353_13135at 2911.777 kb on - strand, within AO353_13135at 2911.779 kb on + strand, within AO353_13135at 2911.779 kb on + strand, within AO353_13135at 2911.779 kb on + strand, within AO353_13135at 2911.780 kb on - strand, within AO353_13135at 2911.780 kb on - strand, within AO353_13135at 2911.816 kb on + strand, within AO353_13135at 2911.817 kb on - strand, within AO353_13135at 2911.817 kb on - strand, within AO353_13135at 2911.822 kb on + strand, within AO353_13135at 2911.822 kb on + strand, within AO353_13135at 2911.822 kb on + strand, within AO353_13135at 2911.822 kb on + strand, within AO353_13135at 2911.822 kb on + strand, within AO353_13135at 2911.822 kb on + strand, within AO353_13135at 2911.823 kb on - strand, within AO353_13135at 2911.823 kb on - strand, within AO353_13135at 2911.823 kb on - strand, within AO353_13135at 2911.823 kb on - strand, within AO353_13135at 2911.938 kb on + strand, within AO353_13135at 2911.938 kb on + strand, within AO353_13135at 2911.981 kb on + strand, within AO353_13135at 2911.981 kb on + strand, within AO353_13135at 2911.981 kb on + strand, within AO353_13135at 2911.981 kb on + strand, within AO353_13135at 2911.981 kb on + strand, within AO353_13135at 2911.981 kb on + strand, within AO353_13135at 2911.981 kb on + strand, within AO353_13135at 2911.981 kb on + strand, within AO353_13135at 2911.981 kb on + strand, within AO353_13135at 2911.982 kb on - strand, within AO353_13135at 2911.982 kb on - strand, within AO353_13135at 2911.982 kb on - strand, within AO353_13135at 2911.982 kb on - strand, within AO353_13135at 2911.982 kb on - strand, within AO353_13135at 2911.982 kb on - strand, within AO353_13135at 2911.982 kb on - strand, within AO353_13135at 2911.982 kb on - strand, within AO353_13135at 2911.982 kb on - strand, within AO353_13135at 2911.982 kb on - strand, within AO353_13135at 2911.982 kb on - strand, within AO353_13135at 2911.982 kb on - strand, within AO353_13135at 2911.982 kb on - strand, within AO353_13135at 2912.050 kb on + strand, within AO353_13135at 2912.050 kb on + strand, within AO353_13135at 2912.050 kb on + strand, within AO353_13135at 2912.050 kb on + strand, within AO353_13135at 2912.050 kb on + strand, within AO353_13135at 2912.050 kb on + strand, within AO353_13135at 2912.050 kb on + strand, within AO353_13135at 2912.050 kb on + strand, within AO353_13135at 2912.050 kb on + strand, within AO353_13135at 2912.050 kb on + strand, within AO353_13135at 2912.051 kb on - strand, within AO353_13135at 2912.051 kb on - strand, within AO353_13135at 2912.051 kb on - strand, within AO353_13135at 2912.051 kb on - strand, within AO353_13135at 2912.051 kb on - strand, within AO353_13135at 2912.279 kb on + strand, within AO353_13135at 2912.279 kb on + strand, within AO353_13135at 2912.279 kb on + strand, within AO353_13135at 2912.279 kb on + strand, within AO353_13135at 2912.280 kb on - strand, within AO353_13135at 2912.280 kb on - strand, within AO353_13135at 2912.280 kb on - strand, within AO353_13135at 2912.367 kb on + strandat 2912.545 kb on + strandat 2912.807 kb on + strand, within AO353_13140at 2912.838 kb on + strand, within AO353_13140at 2912.839 kb on - strand, within AO353_13140at 2912.841 kb on + strand, within AO353_13140at 2912.842 kb on - strand, within AO353_13140at 2912.842 kb on - strand, within AO353_13140at 2912.842 kb on - strand, within AO353_13140at 2912.842 kb on - strand, within AO353_13140at 2912.842 kb on - strand, within AO353_13140at 2912.842 kb on - strand, within AO353_13140at 2913.050 kb on + strand, within AO353_13140at 2913.125 kb on + strand, within AO353_13140at 2913.125 kb on + strand, within AO353_13140at 2913.126 kb on - strand, within AO353_13140at 2913.126 kb on - strand, within AO353_13140at 2913.126 kb on - strand, within AO353_13140at 2913.180 kb on - strand, within AO353_13140at 2913.183 kb on - strand, within AO353_13140at 2913.242 kb on + strand, within AO353_13140at 2913.242 kb on + strand, within AO353_13140at 2913.242 kb on + strand, within AO353_13140at 2913.277 kb on + strand, within AO353_13140at 2913.278 kb on - strand, within AO353_13140at 2913.286 kb on + strand, within AO353_13140at 2913.286 kb on + strand, within AO353_13140at 2913.287 kb on - strand, within AO353_13140at 2913.415 kb on + strandat 2913.465 kb on + strandat 2913.513 kb on + strandat 2913.535 kb on + strandat 2913.548 kb on + strandat 2913.548 kb on + strandat 2913.552 kb on + strandat 2913.552 kb on + strandat 2913.558 kb on + strandat 2913.558 kb on + strandat 2913.558 kb on + strandat 2913.572 kb on + strandat 2913.839 kb on + strandat 2913.849 kb on + strandat 2913.849 kb on + strandat 2913.849 kb on + strandat 2913.850 kb on - strandat 2913.998 kb on + strand, within AO353_13150at 2914.029 kb on + strand, within AO353_13150at 2914.029 kb on + strand, within AO353_13150at 2914.029 kb on + strand, within AO353_13150at 2914.029 kb on + strand, within AO353_13150at 2914.029 kb on + strand, within AO353_13150at 2914.030 kb on - strand, within AO353_13150at 2914.030 kb on - strand, within AO353_13150at 2914.030 kb on - strand, within AO353_13150at 2914.030 kb on - strand, within AO353_13150at 2914.030 kb on - strand, within AO353_13150at 2914.030 kb on - strand, within AO353_13150at 2914.097 kb on + strand, within AO353_13150at 2914.097 kb on + strand, within AO353_13150at 2914.098 kb on - strand, within AO353_13150at 2914.133 kb on + strand, within AO353_13150at 2914.133 kb on + strand, within AO353_13150at 2914.134 kb on - strand, within AO353_13150at 2914.190 kb on + strand, within AO353_13150at 2914.254 kb on + strand, within AO353_13150at 2914.254 kb on + strand, within AO353_13150at 2914.254 kb on + strand, within AO353_13150at 2914.254 kb on + strand, within AO353_13150at 2914.254 kb on + strand, within AO353_13150at 2914.254 kb on + strand, within AO353_13150at 2914.255 kb on - strand, within AO353_13150at 2914.255 kb on - strand, within AO353_13150at 2914.255 kb on - strand, within AO353_13150at 2914.255 kb on - strand, within AO353_13150at 2914.255 kb on - strand, within AO353_13150at 2914.255 kb on - strand, within AO353_13150at 2914.255 kb on - strand, within AO353_13150at 2914.262 kb on + strand, within AO353_13150at 2914.476 kb on + strand, within AO353_13150at 2914.476 kb on + strand, within AO353_13150at 2914.477 kb on - strand, within AO353_13150at 2914.478 kb on + strand, within AO353_13150at 2914.478 kb on + strand, within AO353_13150at 2914.478 kb on + strand, within AO353_13150at 2914.478 kb on + strand, within AO353_13150at 2914.478 kb on + strand, within AO353_13150at 2914.479 kb on - strand, within AO353_13150at 2914.479 kb on - strand, within AO353_13150

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
remove
2,911,600 + AO353_13135 0.52 +0.2
2,911,600 + AO353_13135 0.52 -1.7
2,911,600 + AO353_13135 0.52 -1.1
2,911,601 - AO353_13135 0.52 -1.4
2,911,601 - AO353_13135 0.52 -1.8
2,911,601 - AO353_13135 0.52 +0.1
2,911,673 + AO353_13135 0.55 -1.0
2,911,673 + AO353_13135 0.55 -0.2
2,911,776 + AO353_13135 0.61 -3.1
2,911,776 + AO353_13135 0.61 -0.7
2,911,777 - AO353_13135 0.61 -0.4
2,911,777 - AO353_13135 0.61 +1.0
2,911,779 + AO353_13135 0.61 -1.4
2,911,779 + AO353_13135 0.61 +0.8
2,911,779 + AO353_13135 0.61 -0.4
2,911,780 - AO353_13135 0.61 +0.4
2,911,780 - AO353_13135 0.61 +1.0
2,911,816 + AO353_13135 0.63 -0.1
2,911,817 - AO353_13135 0.63 -0.2
2,911,817 - AO353_13135 0.63 +0.2
2,911,822 + AO353_13135 0.63 +1.2
2,911,822 + AO353_13135 0.63 +0.8
2,911,822 + AO353_13135 0.63 +0.9
2,911,822 + AO353_13135 0.63 +0.8
2,911,822 + AO353_13135 0.63 +0.7
2,911,822 + AO353_13135 0.63 -0.9
2,911,823 - AO353_13135 0.63 -0.3
2,911,823 - AO353_13135 0.63 -0.9
2,911,823 - AO353_13135 0.63 +1.7
2,911,823 - AO353_13135 0.63 -0.2
2,911,938 + AO353_13135 0.69 -0.5
2,911,938 + AO353_13135 0.69 -1.1
2,911,981 + AO353_13135 0.72 +0.1
2,911,981 + AO353_13135 0.72 +0.6
2,911,981 + AO353_13135 0.72 -0.6
2,911,981 + AO353_13135 0.72 +0.8
2,911,981 + AO353_13135 0.72 +0.1
2,911,981 + AO353_13135 0.72 -0.2
2,911,981 + AO353_13135 0.72 -0.3
2,911,981 + AO353_13135 0.72 -0.0
2,911,981 + AO353_13135 0.72 +0.5
2,911,982 - AO353_13135 0.72 -0.6
2,911,982 - AO353_13135 0.72 +1.1
2,911,982 - AO353_13135 0.72 -3.1
2,911,982 - AO353_13135 0.72 -0.2
2,911,982 - AO353_13135 0.72 +0.1
2,911,982 - AO353_13135 0.72 -0.7
2,911,982 - AO353_13135 0.72 -1.2
2,911,982 - AO353_13135 0.72 +0.3
2,911,982 - AO353_13135 0.72 +0.1
2,911,982 - AO353_13135 0.72 +0.1
2,911,982 - AO353_13135 0.72 -1.8
2,911,982 - AO353_13135 0.72 -0.8
2,911,982 - AO353_13135 0.72 +0.4
2,912,050 + AO353_13135 0.75 +0.2
2,912,050 + AO353_13135 0.75 -1.4
2,912,050 + AO353_13135 0.75 +0.1
2,912,050 + AO353_13135 0.75 +0.9
2,912,050 + AO353_13135 0.75 +1.0
2,912,050 + AO353_13135 0.75 -0.3
2,912,050 + AO353_13135 0.75 -0.1
2,912,050 + AO353_13135 0.75 -0.2
2,912,050 + AO353_13135 0.75 -0.7
2,912,050 + AO353_13135 0.75 +0.6
2,912,051 - AO353_13135 0.75 -0.6
2,912,051 - AO353_13135 0.75 +0.4
2,912,051 - AO353_13135 0.75 +0.4
2,912,051 - AO353_13135 0.75 +0.1
2,912,051 - AO353_13135 0.75 +0.1
2,912,279 + AO353_13135 0.87 -0.8
2,912,279 + AO353_13135 0.87 -0.3
2,912,279 + AO353_13135 0.87 -1.0
2,912,279 + AO353_13135 0.87 -0.4
2,912,280 - AO353_13135 0.87 -1.6
2,912,280 - AO353_13135 0.87 -0.8
2,912,280 - AO353_13135 0.87 +0.8
2,912,367 + -0.2
2,912,545 + -0.0
2,912,807 + AO353_13140 0.29 -0.0
2,912,838 + AO353_13140 0.32 +1.4
2,912,839 - AO353_13140 0.33 -0.2
2,912,841 + AO353_13140 0.33 +0.4
2,912,842 - AO353_13140 0.33 -0.9
2,912,842 - AO353_13140 0.33 +1.4
2,912,842 - AO353_13140 0.33 -1.0
2,912,842 - AO353_13140 0.33 +0.5
2,912,842 - AO353_13140 0.33 +0.2
2,912,842 - AO353_13140 0.33 -0.6
2,913,050 + AO353_13140 0.54 -1.4
2,913,125 + AO353_13140 0.62 -0.9
2,913,125 + AO353_13140 0.62 +0.7
2,913,126 - AO353_13140 0.62 -0.6
2,913,126 - AO353_13140 0.62 -0.4
2,913,126 - AO353_13140 0.62 -0.2
2,913,180 - AO353_13140 0.68 +0.4
2,913,183 - AO353_13140 0.68 -0.8
2,913,242 + AO353_13140 0.74 -1.2
2,913,242 + AO353_13140 0.74 -1.6
2,913,242 + AO353_13140 0.74 +0.6
2,913,277 + AO353_13140 0.78 -1.4
2,913,278 - AO353_13140 0.78 +0.8
2,913,286 + AO353_13140 0.78 -0.4
2,913,286 + AO353_13140 0.78 -0.4
2,913,287 - AO353_13140 0.79 -0.6
2,913,415 + -1.0
2,913,465 + -0.4
2,913,513 + +0.5
2,913,535 + +1.4
2,913,548 + +1.0
2,913,548 + -1.1
2,913,552 + -0.4
2,913,552 + +0.6
2,913,558 + +0.5
2,913,558 + -1.0
2,913,558 + -0.0
2,913,572 + -0.7
2,913,839 + -0.2
2,913,849 + +0.2
2,913,849 + -0.1
2,913,849 + +0.2
2,913,850 - +0.1
2,913,998 + AO353_13150 0.11 +0.3
2,914,029 + AO353_13150 0.13 -0.8
2,914,029 + AO353_13150 0.13 +0.5
2,914,029 + AO353_13150 0.13 -1.2
2,914,029 + AO353_13150 0.13 +0.2
2,914,029 + AO353_13150 0.13 -0.6
2,914,030 - AO353_13150 0.13 -1.4
2,914,030 - AO353_13150 0.13 +0.8
2,914,030 - AO353_13150 0.13 -0.4
2,914,030 - AO353_13150 0.13 +0.8
2,914,030 - AO353_13150 0.13 -0.1
2,914,030 - AO353_13150 0.13 -0.9
2,914,097 + AO353_13150 0.18 -0.4
2,914,097 + AO353_13150 0.18 -1.9
2,914,098 - AO353_13150 0.18 -2.4
2,914,133 + AO353_13150 0.21 +0.2
2,914,133 + AO353_13150 0.21 -0.4
2,914,134 - AO353_13150 0.21 -0.9
2,914,190 + AO353_13150 0.25 -0.2
2,914,254 + AO353_13150 0.30 -1.0
2,914,254 + AO353_13150 0.30 +0.0
2,914,254 + AO353_13150 0.30 -2.5
2,914,254 + AO353_13150 0.30 +0.8
2,914,254 + AO353_13150 0.30 -0.4
2,914,254 + AO353_13150 0.30 -1.3
2,914,255 - AO353_13150 0.30 -0.1
2,914,255 - AO353_13150 0.30 +0.1
2,914,255 - AO353_13150 0.30 +1.1
2,914,255 - AO353_13150 0.30 +0.4
2,914,255 - AO353_13150 0.30 +0.4
2,914,255 - AO353_13150 0.30 -1.0
2,914,255 - AO353_13150 0.30 -0.9
2,914,262 + AO353_13150 0.31 +1.1
2,914,476 + AO353_13150 0.47 -0.4
2,914,476 + AO353_13150 0.47 +0.0
2,914,477 - AO353_13150 0.47 -0.6
2,914,478 + AO353_13150 0.47 +0.2
2,914,478 + AO353_13150 0.47 -0.1
2,914,478 + AO353_13150 0.47 -2.5
2,914,478 + AO353_13150 0.47 -0.0
2,914,478 + AO353_13150 0.47 +0.3
2,914,479 - AO353_13150 0.47 -0.8
2,914,479 - AO353_13150 0.47 +1.8

Or see this region's nucleotide sequence