Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_12930

Experiment: L-Aspartic Acid (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_12920 and AO353_12925 overlap by 1 nucleotidesAO353_12925 and AO353_12930 are separated by 8 nucleotidesAO353_12930 and AO353_12935 are separated by 84 nucleotides AO353_12920: AO353_12920 - glycosyl transferase, at 2,860,518 to 2,861,648 _12920 AO353_12925: AO353_12925 - acetyltransferase, at 2,861,648 to 2,862,544 _12925 AO353_12930: AO353_12930 - GlcNAc-PI de-N-acetylase, at 2,862,553 to 2,863,968 _12930 AO353_12935: AO353_12935 - glycosyltransferase, at 2,864,053 to 2,865,009 _12935 Position (kb) 2862 2863 2864Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2862.540 kb on + strandat 2862.540 kb on + strandat 2862.603 kb on + strandat 2862.739 kb on + strand, within AO353_12930at 2862.968 kb on + strand, within AO353_12930at 2862.982 kb on + strand, within AO353_12930at 2863.351 kb on + strand, within AO353_12930at 2863.351 kb on + strand, within AO353_12930at 2863.648 kb on - strand, within AO353_12930at 2863.754 kb on + strand, within AO353_12930at 2863.754 kb on + strand, within AO353_12930at 2863.754 kb on + strand, within AO353_12930at 2863.754 kb on + strand, within AO353_12930at 2863.754 kb on + strand, within AO353_12930at 2863.754 kb on + strand, within AO353_12930at 2863.772 kb on + strand, within AO353_12930at 2863.966 kb on + strandat 2863.966 kb on + strandat 2863.966 kb on + strandat 2863.966 kb on + strandat 2864.063 kb on + strandat 2864.063 kb on + strandat 2864.063 kb on + strandat 2864.220 kb on + strand, within AO353_12935at 2864.320 kb on + strand, within AO353_12935at 2864.320 kb on + strand, within AO353_12935at 2864.320 kb on + strand, within AO353_12935at 2864.320 kb on + strand, within AO353_12935at 2864.335 kb on + strand, within AO353_12935at 2864.335 kb on + strand, within AO353_12935at 2864.335 kb on + strand, within AO353_12935at 2864.359 kb on + strand, within AO353_12935at 2864.523 kb on + strand, within AO353_12935at 2864.539 kb on + strand, within AO353_12935at 2864.775 kb on + strand, within AO353_12935at 2864.913 kb on + strand, within AO353_12935at 2864.913 kb on + strand, within AO353_12935at 2864.913 kb on + strand, within AO353_12935at 2864.925 kb on + strandat 2864.925 kb on + strandat 2864.925 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
remove
2,862,540 + -1.1
2,862,540 + -0.6
2,862,603 + -0.6
2,862,739 + AO353_12930 0.13 +0.4
2,862,968 + AO353_12930 0.29 +0.4
2,862,982 + AO353_12930 0.30 -0.4
2,863,351 + AO353_12930 0.56 +1.0
2,863,351 + AO353_12930 0.56 -1.3
2,863,648 - AO353_12930 0.77 -1.0
2,863,754 + AO353_12930 0.85 -1.3
2,863,754 + AO353_12930 0.85 -1.1
2,863,754 + AO353_12930 0.85 +0.6
2,863,754 + AO353_12930 0.85 -0.5
2,863,754 + AO353_12930 0.85 -1.9
2,863,754 + AO353_12930 0.85 -1.4
2,863,772 + AO353_12930 0.86 +0.7
2,863,966 + -0.2
2,863,966 + +1.3
2,863,966 + +0.3
2,863,966 + -0.9
2,864,063 + +1.1
2,864,063 + +0.6
2,864,063 + -0.9
2,864,220 + AO353_12935 0.17 +0.4
2,864,320 + AO353_12935 0.28 -1.5
2,864,320 + AO353_12935 0.28 -1.7
2,864,320 + AO353_12935 0.28 -0.9
2,864,320 + AO353_12935 0.28 -0.4
2,864,335 + AO353_12935 0.29 +0.4
2,864,335 + AO353_12935 0.29 -1.2
2,864,335 + AO353_12935 0.29 -0.4
2,864,359 + AO353_12935 0.32 +0.4
2,864,523 + AO353_12935 0.49 -0.2
2,864,539 + AO353_12935 0.51 -0.6
2,864,775 + AO353_12935 0.75 -1.0
2,864,913 + AO353_12935 0.90 -0.0
2,864,913 + AO353_12935 0.90 -2.6
2,864,913 + AO353_12935 0.90 +0.8
2,864,925 + -0.6
2,864,925 + +3.0
2,864,925 + -0.9

Or see this region's nucleotide sequence