Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_12460

Experiment: L-Aspartic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_12455 and AO353_12460 are separated by 181 nucleotides AO353_12455: AO353_12455 - nuclease, at 2,739,390 to 2,740,208 _12455 AO353_12460: AO353_12460 - malate dehydrogenase, at 2,740,390 to 2,741,658 _12460 Position (kb) 2740 2741 2742Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2739.407 kb on - strandat 2739.407 kb on - strandat 2739.407 kb on - strandat 2739.455 kb on + strandat 2739.455 kb on + strandat 2739.456 kb on - strandat 2739.599 kb on + strand, within AO353_12455at 2739.756 kb on + strand, within AO353_12455at 2739.756 kb on + strand, within AO353_12455at 2739.756 kb on + strand, within AO353_12455at 2739.756 kb on + strand, within AO353_12455at 2739.756 kb on + strand, within AO353_12455at 2739.757 kb on - strand, within AO353_12455at 2739.757 kb on - strand, within AO353_12455at 2739.913 kb on + strand, within AO353_12455at 2740.025 kb on - strand, within AO353_12455at 2740.286 kb on + strandat 2740.346 kb on - strandat 2740.346 kb on - strandat 2740.372 kb on + strandat 2740.372 kb on + strandat 2740.373 kb on - strandat 2740.444 kb on - strandat 2740.444 kb on - strandat 2740.501 kb on + strandat 2740.502 kb on - strandat 2740.502 kb on - strandat 2740.559 kb on - strand, within AO353_12460at 2740.559 kb on - strand, within AO353_12460at 2740.564 kb on + strand, within AO353_12460at 2740.564 kb on + strand, within AO353_12460at 2740.564 kb on + strand, within AO353_12460at 2740.565 kb on - strand, within AO353_12460at 2740.565 kb on - strand, within AO353_12460at 2740.565 kb on - strand, within AO353_12460at 2740.627 kb on - strand, within AO353_12460at 2740.665 kb on + strand, within AO353_12460at 2740.665 kb on + strand, within AO353_12460at 2740.665 kb on + strand, within AO353_12460at 2740.665 kb on + strand, within AO353_12460at 2740.666 kb on - strandat 2740.666 kb on - strand, within AO353_12460at 2740.666 kb on - strand, within AO353_12460at 2740.761 kb on + strand, within AO353_12460at 2740.761 kb on + strand, within AO353_12460at 2740.761 kb on + strand, within AO353_12460at 2740.761 kb on + strand, within AO353_12460at 2740.761 kb on + strand, within AO353_12460at 2740.762 kb on - strand, within AO353_12460at 2740.762 kb on - strand, within AO353_12460at 2740.762 kb on - strand, within AO353_12460at 2740.762 kb on - strand, within AO353_12460at 2740.762 kb on - strand, within AO353_12460at 2740.762 kb on - strand, within AO353_12460at 2740.762 kb on - strand, within AO353_12460at 2740.983 kb on + strand, within AO353_12460at 2740.984 kb on - strand, within AO353_12460at 2741.089 kb on + strand, within AO353_12460at 2741.089 kb on + strand, within AO353_12460at 2741.089 kb on + strand, within AO353_12460at 2741.089 kb on + strand, within AO353_12460at 2741.089 kb on + strand, within AO353_12460at 2741.089 kb on + strand, within AO353_12460at 2741.090 kb on - strand, within AO353_12460at 2741.090 kb on - strand, within AO353_12460at 2741.342 kb on + strand, within AO353_12460at 2741.342 kb on + strand, within AO353_12460at 2741.342 kb on + strand, within AO353_12460at 2741.342 kb on + strand, within AO353_12460at 2741.342 kb on + strand, within AO353_12460at 2741.343 kb on - strand, within AO353_12460at 2741.343 kb on - strand, within AO353_12460at 2741.343 kb on - strand, within AO353_12460at 2741.479 kb on + strand, within AO353_12460at 2741.479 kb on + strand, within AO353_12460at 2741.480 kb on - strand, within AO353_12460at 2741.512 kb on + strand, within AO353_12460at 2741.512 kb on + strand, within AO353_12460at 2741.512 kb on + strand, within AO353_12460at 2741.512 kb on + strand, within AO353_12460at 2741.512 kb on + strand, within AO353_12460at 2741.513 kb on - strand, within AO353_12460at 2741.513 kb on - strand, within AO353_12460at 2741.513 kb on - strand, within AO353_12460at 2741.513 kb on - strand, within AO353_12460at 2741.513 kb on - strand, within AO353_12460at 2741.513 kb on - strand, within AO353_12460at 2741.620 kb on + strandat 2741.657 kb on - strandat 2741.666 kb on + strandat 2741.666 kb on + strandat 2741.666 kb on + strandat 2741.666 kb on + strandat 2741.667 kb on - strandat 2741.667 kb on - strandat 2741.667 kb on - strandat 2741.714 kb on + strandat 2741.714 kb on + strandat 2741.714 kb on + strandat 2741.714 kb on + strandat 2741.714 kb on + strandat 2741.714 kb on + strandat 2741.715 kb on - strandat 2741.734 kb on - strandat 2741.734 kb on - strandat 2741.734 kb on - strandat 2741.750 kb on + strandat 2741.750 kb on + strandat 2741.750 kb on + strandat 2741.750 kb on + strandat 2741.792 kb on + strandat 2741.793 kb on - strandat 2741.793 kb on - strandat 2741.807 kb on + strandat 2741.807 kb on + strandat 2741.807 kb on + strandat 2741.807 kb on + strandat 2741.807 kb on + strandat 2741.807 kb on + strandat 2741.807 kb on + strandat 2741.807 kb on + strandat 2741.807 kb on + strandat 2741.808 kb on - strandat 2741.808 kb on - strandat 2741.808 kb on - strandat 2741.808 kb on - strandat 2741.808 kb on - strandat 2741.808 kb on - strandat 2741.808 kb on - strandat 2741.880 kb on - strandat 2741.880 kb on - strandat 2741.880 kb on - strandat 2741.880 kb on - strandat 2741.880 kb on - strandat 2741.880 kb on - strandat 2741.880 kb on - strandat 2741.880 kb on - strandat 2741.880 kb on - strandat 2741.880 kb on - strandat 2741.880 kb on - strandat 2741.880 kb on - strandat 2741.880 kb on - strandat 2741.880 kb on - strandat 2741.880 kb on - strandat 2741.880 kb on - strandat 2741.880 kb on - strandat 2741.880 kb on - strandat 2741.880 kb on - strandat 2741.880 kb on - strandat 2741.880 kb on - strandat 2741.880 kb on - strandat 2741.880 kb on - strandat 2741.880 kb on - strandat 2741.880 kb on - strandat 2741.880 kb on - strandat 2741.880 kb on - strandat 2741.909 kb on + strandat 2741.956 kb on - strandat 2741.956 kb on - strandat 2741.956 kb on - strandat 2741.956 kb on - strandat 2741.956 kb on - strandat 2742.318 kb on + strandat 2742.318 kb on + strandat 2742.318 kb on + strandat 2742.318 kb on + strandat 2742.318 kb on + strandat 2742.318 kb on + strandat 2742.319 kb on - strandat 2742.319 kb on - strandat 2742.319 kb on - strandat 2742.319 kb on - strandat 2742.328 kb on - strandat 2742.368 kb on + strandat 2742.368 kb on + strandat 2742.368 kb on + strandat 2742.368 kb on + strandat 2742.368 kb on + strandat 2742.368 kb on + strandat 2742.368 kb on + strandat 2742.368 kb on + strandat 2742.368 kb on + strandat 2742.369 kb on - strandat 2742.369 kb on - strandat 2742.369 kb on - strandat 2742.369 kb on - strandat 2742.369 kb on - strandat 2742.369 kb on - strandat 2742.369 kb on - strandat 2742.369 kb on - strandat 2742.369 kb on - strandat 2742.389 kb on + strandat 2742.389 kb on + strandat 2742.467 kb on + strandat 2742.467 kb on + strandat 2742.467 kb on + strandat 2742.467 kb on + strandat 2742.468 kb on - strandat 2742.496 kb on + strandat 2742.496 kb on + strandat 2742.496 kb on + strandat 2742.496 kb on + strandat 2742.496 kb on + strandat 2742.497 kb on - strandat 2742.497 kb on - strandat 2742.497 kb on - strandat 2742.638 kb on + strandat 2742.638 kb on + strandat 2742.638 kb on + strandat 2742.639 kb on - strandat 2742.639 kb on - strandat 2742.639 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
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2,739,407 - +1.5
2,739,407 - -1.1
2,739,407 - +2.5
2,739,455 + +1.5
2,739,455 + -0.5
2,739,456 - +0.9
2,739,599 + AO353_12455 0.26 +0.4
2,739,756 + AO353_12455 0.45 -0.7
2,739,756 + AO353_12455 0.45 +0.9
2,739,756 + AO353_12455 0.45 +0.5
2,739,756 + AO353_12455 0.45 +0.5
2,739,756 + AO353_12455 0.45 -1.5
2,739,757 - AO353_12455 0.45 -0.7
2,739,757 - AO353_12455 0.45 +1.9
2,739,913 + AO353_12455 0.64 -0.2
2,740,025 - AO353_12455 0.78 +0.4
2,740,286 + -0.8
2,740,346 - -2.9
2,740,346 - -0.9
2,740,372 + -1.3
2,740,372 + -0.5
2,740,373 - -0.1
2,740,444 - -0.5
2,740,444 - -1.4
2,740,501 + +0.2
2,740,502 - -1.1
2,740,502 - -1.9
2,740,559 - AO353_12460 0.13 -0.3
2,740,559 - AO353_12460 0.13 -0.7
2,740,564 + AO353_12460 0.14 -0.5
2,740,564 + AO353_12460 0.14 -0.6
2,740,564 + AO353_12460 0.14 +0.5
2,740,565 - AO353_12460 0.14 -1.5
2,740,565 - AO353_12460 0.14 +0.8
2,740,565 - AO353_12460 0.14 +0.5
2,740,627 - AO353_12460 0.19 +1.5
2,740,665 + AO353_12460 0.22 +0.3
2,740,665 + AO353_12460 0.22 -0.5
2,740,665 + AO353_12460 0.22 -0.3
2,740,665 + AO353_12460 0.22 -1.7
2,740,666 - -0.7
2,740,666 - AO353_12460 0.22 -0.8
2,740,666 - AO353_12460 0.22 -0.9
2,740,761 + AO353_12460 0.29 -0.5
2,740,761 + AO353_12460 0.29 +0.1
2,740,761 + AO353_12460 0.29 +1.9
2,740,761 + AO353_12460 0.29 -0.5
2,740,761 + AO353_12460 0.29 -1.0
2,740,762 - AO353_12460 0.29 -0.5
2,740,762 - AO353_12460 0.29 -0.1
2,740,762 - AO353_12460 0.29 -0.9
2,740,762 - AO353_12460 0.29 +0.5
2,740,762 - AO353_12460 0.29 -0.1
2,740,762 - AO353_12460 0.29 +0.2
2,740,762 - AO353_12460 0.29 +2.5
2,740,983 + AO353_12460 0.47 -0.1
2,740,984 - AO353_12460 0.47 -1.7
2,741,089 + AO353_12460 0.55 -0.7
2,741,089 + AO353_12460 0.55 -1.2
2,741,089 + AO353_12460 0.55 +1.2
2,741,089 + AO353_12460 0.55 +0.5
2,741,089 + AO353_12460 0.55 -0.9
2,741,089 + AO353_12460 0.55 -1.5
2,741,090 - AO353_12460 0.55 -0.1
2,741,090 - AO353_12460 0.55 -0.8
2,741,342 + AO353_12460 0.75 -0.5
2,741,342 + AO353_12460 0.75 -1.7
2,741,342 + AO353_12460 0.75 -1.1
2,741,342 + AO353_12460 0.75 +0.5
2,741,342 + AO353_12460 0.75 -0.5
2,741,343 - AO353_12460 0.75 -0.5
2,741,343 - AO353_12460 0.75 -0.7
2,741,343 - AO353_12460 0.75 -0.7
2,741,479 + AO353_12460 0.86 +0.5
2,741,479 + AO353_12460 0.86 +0.1
2,741,480 - AO353_12460 0.86 -0.8
2,741,512 + AO353_12460 0.88 -1.7
2,741,512 + AO353_12460 0.88 -0.5
2,741,512 + AO353_12460 0.88 -0.5
2,741,512 + AO353_12460 0.88 -1.7
2,741,512 + AO353_12460 0.88 -0.1
2,741,513 - AO353_12460 0.88 -1.4
2,741,513 - AO353_12460 0.88 -0.5
2,741,513 - AO353_12460 0.88 -0.3
2,741,513 - AO353_12460 0.88 -0.2
2,741,513 - AO353_12460 0.88 -0.5
2,741,513 - AO353_12460 0.88 +1.1
2,741,620 + +0.9
2,741,657 - +0.3
2,741,666 + +0.5
2,741,666 + -0.5
2,741,666 + -0.5
2,741,666 + -0.1
2,741,667 - +0.5
2,741,667 - +0.5
2,741,667 - -0.3
2,741,714 + -0.4
2,741,714 + +0.1
2,741,714 + -0.9
2,741,714 + +0.5
2,741,714 + -1.1
2,741,714 + -0.3
2,741,715 - +0.2
2,741,734 - +0.2
2,741,734 - +0.4
2,741,734 - +1.1
2,741,750 + -0.3
2,741,750 + +1.9
2,741,750 + +0.6
2,741,750 + -0.1
2,741,792 + -0.9
2,741,793 - -0.3
2,741,793 - +0.4
2,741,807 + -0.8
2,741,807 + +0.5
2,741,807 + -1.8
2,741,807 + +1.1
2,741,807 + +0.1
2,741,807 + -0.7
2,741,807 + -0.3
2,741,807 + -0.3
2,741,807 + +0.9
2,741,808 - +0.2
2,741,808 - -0.0
2,741,808 - -3.3
2,741,808 - -0.4
2,741,808 - +0.1
2,741,808 - -1.5
2,741,808 - -1.3
2,741,880 - +0.9
2,741,880 - +0.3
2,741,880 - +0.4
2,741,880 - -0.7
2,741,880 - -1.5
2,741,880 - +0.2
2,741,880 - +0.1
2,741,880 - -0.3
2,741,880 - +0.2
2,741,880 - +0.9
2,741,880 - -1.8
2,741,880 - +0.9
2,741,880 - -0.4
2,741,880 - +0.1
2,741,880 - -0.1
2,741,880 - +0.9
2,741,880 - -1.4
2,741,880 - +0.3
2,741,880 - +0.4
2,741,880 - +0.5
2,741,880 - -0.2
2,741,880 - +0.2
2,741,880 - -0.2
2,741,880 - -1.4
2,741,880 - +0.3
2,741,880 - +3.5
2,741,880 - -0.5
2,741,909 + -0.5
2,741,956 - -0.8
2,741,956 - +0.9
2,741,956 - +1.1
2,741,956 - -1.2
2,741,956 - -1.3
2,742,318 + -0.1
2,742,318 + +1.9
2,742,318 + -0.4
2,742,318 + +0.0
2,742,318 + +0.8
2,742,318 + -0.7
2,742,319 - -0.8
2,742,319 - +0.7
2,742,319 - -0.0
2,742,319 - -0.2
2,742,328 - +0.7
2,742,368 + -2.0
2,742,368 + -0.6
2,742,368 + +0.9
2,742,368 + +0.3
2,742,368 + -0.5
2,742,368 + -0.3
2,742,368 + +0.7
2,742,368 + +1.8
2,742,368 + -0.7
2,742,369 - -0.9
2,742,369 - -0.3
2,742,369 - -0.0
2,742,369 - +2.1
2,742,369 - +1.2
2,742,369 - -2.2
2,742,369 - +1.4
2,742,369 - -1.2
2,742,369 - -0.5
2,742,389 + -0.9
2,742,389 + +0.3
2,742,467 + +0.8
2,742,467 + +0.7
2,742,467 + -2.2
2,742,467 + -0.6
2,742,468 - +0.2
2,742,496 + -1.7
2,742,496 + +1.8
2,742,496 + -1.2
2,742,496 + +1.1
2,742,496 + +1.1
2,742,497 - +1.1
2,742,497 - +0.2
2,742,497 - +0.2
2,742,638 + +0.7
2,742,638 + -2.1
2,742,638 + +0.7
2,742,639 - -1.9
2,742,639 - -0.1
2,742,639 - -0.2

Or see this region's nucleotide sequence