Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_10630

Experiment: L-Aspartic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_10625 and AO353_10630 are separated by 23 nucleotidesAO353_10630 and AO353_10635 overlap by 4 nucleotides AO353_10625: AO353_10625 - potassium transporter peripheral membrane component, at 2,329,200 to 2,330,573 _10625 AO353_10630: AO353_10630 - 16S rRNA methyltransferase, at 2,330,597 to 2,331,907 _10630 AO353_10635: AO353_10635 - methionyl-tRNA formyltransferase, at 2,331,904 to 2,332,863 _10635 Position (kb) 2330 2331 2332Strain fitness (log2 ratio) -2 -1 0 1 2at 2329.695 kb on - strand, within AO353_10625at 2329.710 kb on + strand, within AO353_10625at 2329.710 kb on + strand, within AO353_10625at 2329.710 kb on + strand, within AO353_10625at 2329.710 kb on + strand, within AO353_10625at 2329.710 kb on + strand, within AO353_10625at 2329.710 kb on + strand, within AO353_10625at 2329.710 kb on + strand, within AO353_10625at 2329.710 kb on + strand, within AO353_10625at 2329.710 kb on + strand, within AO353_10625at 2329.710 kb on + strand, within AO353_10625at 2329.710 kb on + strand, within AO353_10625at 2329.711 kb on - strand, within AO353_10625at 2329.711 kb on - strand, within AO353_10625at 2329.711 kb on - strand, within AO353_10625at 2329.711 kb on - strand, within AO353_10625at 2329.711 kb on - strand, within AO353_10625at 2329.711 kb on - strand, within AO353_10625at 2329.771 kb on + strand, within AO353_10625at 2329.771 kb on + strand, within AO353_10625at 2329.814 kb on - strand, within AO353_10625at 2329.882 kb on + strand, within AO353_10625at 2329.882 kb on + strand, within AO353_10625at 2329.882 kb on + strand, within AO353_10625at 2329.882 kb on + strand, within AO353_10625at 2329.882 kb on + strand, within AO353_10625at 2329.882 kb on + strand, within AO353_10625at 2329.882 kb on + strand, within AO353_10625at 2329.882 kb on + strand, within AO353_10625at 2329.882 kb on + strand, within AO353_10625at 2329.882 kb on + strand, within AO353_10625at 2329.882 kb on + strand, within AO353_10625at 2329.882 kb on + strand, within AO353_10625at 2329.882 kb on + strand, within AO353_10625at 2329.883 kb on - strand, within AO353_10625at 2329.883 kb on - strand, within AO353_10625at 2329.883 kb on - strand, within AO353_10625at 2329.883 kb on - strand, within AO353_10625at 2329.883 kb on - strand, within AO353_10625at 2329.883 kb on - strand, within AO353_10625at 2329.944 kb on - strand, within AO353_10625at 2330.092 kb on + strand, within AO353_10625at 2330.092 kb on + strand, within AO353_10625at 2330.092 kb on + strand, within AO353_10625at 2330.092 kb on + strand, within AO353_10625at 2330.092 kb on + strand, within AO353_10625at 2330.092 kb on + strand, within AO353_10625at 2330.093 kb on - strand, within AO353_10625at 2330.093 kb on - strand, within AO353_10625at 2330.093 kb on - strand, within AO353_10625at 2330.093 kb on - strand, within AO353_10625at 2330.093 kb on - strand, within AO353_10625at 2330.093 kb on - strand, within AO353_10625at 2330.093 kb on - strand, within AO353_10625at 2330.095 kb on + strand, within AO353_10625at 2330.095 kb on + strand, within AO353_10625at 2330.095 kb on + strand, within AO353_10625at 2330.095 kb on + strand, within AO353_10625at 2330.095 kb on + strand, within AO353_10625at 2330.095 kb on + strand, within AO353_10625at 2330.096 kb on - strand, within AO353_10625at 2330.096 kb on - strand, within AO353_10625at 2330.139 kb on + strand, within AO353_10625at 2330.139 kb on + strand, within AO353_10625at 2330.139 kb on + strand, within AO353_10625at 2330.140 kb on - strand, within AO353_10625at 2330.182 kb on + strand, within AO353_10625at 2330.182 kb on + strand, within AO353_10625at 2330.182 kb on + strand, within AO353_10625at 2330.182 kb on + strand, within AO353_10625at 2330.182 kb on + strand, within AO353_10625at 2330.182 kb on + strand, within AO353_10625at 2330.182 kb on + strand, within AO353_10625at 2330.182 kb on + strand, within AO353_10625at 2330.182 kb on + strand, within AO353_10625at 2330.183 kb on - strand, within AO353_10625at 2330.183 kb on - strand, within AO353_10625at 2330.183 kb on - strand, within AO353_10625at 2330.183 kb on - strand, within AO353_10625at 2330.183 kb on - strand, within AO353_10625at 2330.193 kb on + strand, within AO353_10625at 2330.193 kb on + strand, within AO353_10625at 2330.193 kb on + strand, within AO353_10625at 2330.193 kb on + strand, within AO353_10625at 2330.193 kb on + strand, within AO353_10625at 2330.193 kb on + strand, within AO353_10625at 2330.193 kb on + strand, within AO353_10625at 2330.193 kb on + strand, within AO353_10625at 2330.194 kb on - strand, within AO353_10625at 2330.194 kb on - strand, within AO353_10625at 2330.194 kb on - strand, within AO353_10625at 2330.194 kb on - strand, within AO353_10625at 2330.194 kb on - strand, within AO353_10625at 2330.194 kb on - strand, within AO353_10625at 2330.194 kb on - strand, within AO353_10625at 2330.194 kb on - strand, within AO353_10625at 2330.194 kb on - strand, within AO353_10625at 2330.194 kb on - strand, within AO353_10625at 2330.194 kb on - strand, within AO353_10625at 2330.264 kb on - strand, within AO353_10625at 2330.264 kb on - strand, within AO353_10625at 2330.535 kb on - strandat 2330.634 kb on + strandat 2330.634 kb on + strandat 2330.634 kb on + strandat 2330.635 kb on - strandat 2330.635 kb on - strandat 2330.637 kb on + strandat 2330.637 kb on + strandat 2330.637 kb on + strandat 2330.637 kb on + strandat 2330.637 kb on + strandat 2330.637 kb on + strandat 2330.637 kb on + strandat 2330.637 kb on + strandat 2330.637 kb on + strandat 2330.637 kb on + strandat 2330.638 kb on - strandat 2330.638 kb on - strandat 2330.638 kb on - strandat 2330.638 kb on - strandat 2330.638 kb on - strandat 2330.638 kb on - strandat 2330.799 kb on + strand, within AO353_10630at 2331.354 kb on + strand, within AO353_10630at 2331.354 kb on + strand, within AO353_10630at 2331.354 kb on + strand, within AO353_10630at 2331.354 kb on + strand, within AO353_10630at 2331.354 kb on + strand, within AO353_10630at 2331.651 kb on + strand, within AO353_10630at 2331.651 kb on + strand, within AO353_10630at 2331.651 kb on + strand, within AO353_10630at 2331.651 kb on + strand, within AO353_10630at 2331.651 kb on + strand, within AO353_10630at 2331.651 kb on + strand, within AO353_10630at 2331.651 kb on + strand, within AO353_10630at 2331.651 kb on + strand, within AO353_10630at 2331.651 kb on + strand, within AO353_10630at 2331.651 kb on + strand, within AO353_10630at 2331.652 kb on - strand, within AO353_10630at 2331.652 kb on - strand, within AO353_10630at 2331.652 kb on - strand, within AO353_10630at 2331.652 kb on - strand, within AO353_10630at 2331.652 kb on - strand, within AO353_10630at 2331.652 kb on - strand, within AO353_10630at 2331.663 kb on + strand, within AO353_10630at 2331.862 kb on + strandat 2331.928 kb on + strandat 2331.928 kb on + strandat 2331.928 kb on + strandat 2331.929 kb on - strandat 2331.929 kb on - strandat 2331.929 kb on - strandat 2331.929 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
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2,329,695 - AO353_10625 0.36 +0.2
2,329,710 + AO353_10625 0.37 -0.4
2,329,710 + AO353_10625 0.37 +0.1
2,329,710 + AO353_10625 0.37 -1.2
2,329,710 + AO353_10625 0.37 -2.0
2,329,710 + AO353_10625 0.37 -0.5
2,329,710 + AO353_10625 0.37 -0.1
2,329,710 + AO353_10625 0.37 -1.2
2,329,710 + AO353_10625 0.37 -0.4
2,329,710 + AO353_10625 0.37 +1.3
2,329,710 + AO353_10625 0.37 +2.2
2,329,710 + AO353_10625 0.37 +1.7
2,329,711 - AO353_10625 0.37 -0.7
2,329,711 - AO353_10625 0.37 +1.7
2,329,711 - AO353_10625 0.37 -1.6
2,329,711 - AO353_10625 0.37 -0.9
2,329,711 - AO353_10625 0.37 +0.2
2,329,711 - AO353_10625 0.37 +1.3
2,329,771 + AO353_10625 0.42 +0.7
2,329,771 + AO353_10625 0.42 -0.7
2,329,814 - AO353_10625 0.45 +0.1
2,329,882 + AO353_10625 0.50 -1.5
2,329,882 + AO353_10625 0.50 -0.8
2,329,882 + AO353_10625 0.50 -1.0
2,329,882 + AO353_10625 0.50 -0.3
2,329,882 + AO353_10625 0.50 -0.3
2,329,882 + AO353_10625 0.50 +0.1
2,329,882 + AO353_10625 0.50 -0.7
2,329,882 + AO353_10625 0.50 +0.1
2,329,882 + AO353_10625 0.50 -0.5
2,329,882 + AO353_10625 0.50 -0.3
2,329,882 + AO353_10625 0.50 -1.0
2,329,882 + AO353_10625 0.50 +0.5
2,329,882 + AO353_10625 0.50 +0.1
2,329,883 - AO353_10625 0.50 -0.8
2,329,883 - AO353_10625 0.50 -2.6
2,329,883 - AO353_10625 0.50 +0.6
2,329,883 - AO353_10625 0.50 +1.3
2,329,883 - AO353_10625 0.50 -0.3
2,329,883 - AO353_10625 0.50 +2.7
2,329,944 - AO353_10625 0.54 +0.4
2,330,092 + AO353_10625 0.65 -0.8
2,330,092 + AO353_10625 0.65 -0.5
2,330,092 + AO353_10625 0.65 +0.3
2,330,092 + AO353_10625 0.65 +0.1
2,330,092 + AO353_10625 0.65 +0.1
2,330,092 + AO353_10625 0.65 -0.5
2,330,093 - AO353_10625 0.65 -0.1
2,330,093 - AO353_10625 0.65 -1.3
2,330,093 - AO353_10625 0.65 +0.7
2,330,093 - AO353_10625 0.65 -1.2
2,330,093 - AO353_10625 0.65 -0.1
2,330,093 - AO353_10625 0.65 -0.5
2,330,093 - AO353_10625 0.65 -0.8
2,330,095 + AO353_10625 0.65 +0.2
2,330,095 + AO353_10625 0.65 +2.2
2,330,095 + AO353_10625 0.65 -0.3
2,330,095 + AO353_10625 0.65 -1.0
2,330,095 + AO353_10625 0.65 -2.3
2,330,095 + AO353_10625 0.65 +0.1
2,330,096 - AO353_10625 0.65 +0.3
2,330,096 - AO353_10625 0.65 -0.4
2,330,139 + AO353_10625 0.68 +0.1
2,330,139 + AO353_10625 0.68 -0.5
2,330,139 + AO353_10625 0.68 -1.8
2,330,140 - AO353_10625 0.68 -0.1
2,330,182 + AO353_10625 0.71 -1.4
2,330,182 + AO353_10625 0.71 +0.9
2,330,182 + AO353_10625 0.71 +2.2
2,330,182 + AO353_10625 0.71 -0.4
2,330,182 + AO353_10625 0.71 -0.0
2,330,182 + AO353_10625 0.71 +0.4
2,330,182 + AO353_10625 0.71 -0.7
2,330,182 + AO353_10625 0.71 -0.7
2,330,182 + AO353_10625 0.71 +1.2
2,330,183 - AO353_10625 0.72 +0.9
2,330,183 - AO353_10625 0.72 -1.2
2,330,183 - AO353_10625 0.72 -1.3
2,330,183 - AO353_10625 0.72 -0.4
2,330,183 - AO353_10625 0.72 -1.9
2,330,193 + AO353_10625 0.72 +0.9
2,330,193 + AO353_10625 0.72 +0.8
2,330,193 + AO353_10625 0.72 +1.1
2,330,193 + AO353_10625 0.72 -0.9
2,330,193 + AO353_10625 0.72 -0.1
2,330,193 + AO353_10625 0.72 +1.3
2,330,193 + AO353_10625 0.72 +0.4
2,330,193 + AO353_10625 0.72 -1.4
2,330,194 - AO353_10625 0.72 -0.4
2,330,194 - AO353_10625 0.72 -0.9
2,330,194 - AO353_10625 0.72 +0.0
2,330,194 - AO353_10625 0.72 -1.0
2,330,194 - AO353_10625 0.72 -1.1
2,330,194 - AO353_10625 0.72 +0.1
2,330,194 - AO353_10625 0.72 +0.2
2,330,194 - AO353_10625 0.72 +0.7
2,330,194 - AO353_10625 0.72 -0.8
2,330,194 - AO353_10625 0.72 -1.3
2,330,194 - AO353_10625 0.72 +1.1
2,330,264 - AO353_10625 0.77 +0.7
2,330,264 - AO353_10625 0.77 +1.4
2,330,535 - -0.6
2,330,634 + -0.5
2,330,634 + -0.9
2,330,634 + +0.1
2,330,635 - -0.7
2,330,635 - -0.1
2,330,637 + +1.7
2,330,637 + +2.2
2,330,637 + -0.7
2,330,637 + -0.3
2,330,637 + +0.5
2,330,637 + +0.2
2,330,637 + -0.3
2,330,637 + -0.2
2,330,637 + +0.1
2,330,637 + +0.4
2,330,638 - -0.8
2,330,638 - +0.9
2,330,638 - +1.1
2,330,638 - +0.3
2,330,638 - -1.1
2,330,638 - -0.5
2,330,799 + AO353_10630 0.15 +1.2
2,331,354 + AO353_10630 0.58 +1.2
2,331,354 + AO353_10630 0.58 -1.1
2,331,354 + AO353_10630 0.58 +1.2
2,331,354 + AO353_10630 0.58 -0.3
2,331,354 + AO353_10630 0.58 +0.9
2,331,651 + AO353_10630 0.80 +1.4
2,331,651 + AO353_10630 0.80 -0.1
2,331,651 + AO353_10630 0.80 -0.8
2,331,651 + AO353_10630 0.80 +1.1
2,331,651 + AO353_10630 0.80 -1.5
2,331,651 + AO353_10630 0.80 -0.3
2,331,651 + AO353_10630 0.80 +1.4
2,331,651 + AO353_10630 0.80 +0.5
2,331,651 + AO353_10630 0.80 +0.4
2,331,651 + AO353_10630 0.80 +0.1
2,331,652 - AO353_10630 0.80 +0.8
2,331,652 - AO353_10630 0.80 -0.9
2,331,652 - AO353_10630 0.80 -1.2
2,331,652 - AO353_10630 0.80 -1.4
2,331,652 - AO353_10630 0.80 +0.7
2,331,652 - AO353_10630 0.80 -0.8
2,331,663 + AO353_10630 0.81 -0.0
2,331,862 + -2.5
2,331,928 + -0.0
2,331,928 + -1.5
2,331,928 + -0.2
2,331,929 - +0.3
2,331,929 - -0.1
2,331,929 - +1.3
2,331,929 - -0.5

Or see this region's nucleotide sequence