Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_09875

Experiment: L-Aspartic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_09870 and AO353_09875 are separated by 214 nucleotidesAO353_09875 and AO353_09880 are separated by 367 nucleotides AO353_09870: AO353_09870 - peptidase M23, at 2,154,731 to 2,155,627 _09870 AO353_09875: AO353_09875 - hypothetical protein, at 2,155,842 to 2,156,231 _09875 AO353_09880: AO353_09880 - chemotaxis protein CheY, at 2,156,599 to 2,157,549 _09880 Position (kb) 2155 2156 2157Strain fitness (log2 ratio) -2 -1 0 1 2at 2154.945 kb on + strand, within AO353_09870at 2154.945 kb on + strand, within AO353_09870at 2154.945 kb on + strand, within AO353_09870at 2154.945 kb on + strand, within AO353_09870at 2154.945 kb on + strand, within AO353_09870at 2154.945 kb on + strand, within AO353_09870at 2154.945 kb on + strand, within AO353_09870at 2154.946 kb on - strand, within AO353_09870at 2154.946 kb on - strand, within AO353_09870at 2154.946 kb on - strand, within AO353_09870at 2154.946 kb on - strand, within AO353_09870at 2155.123 kb on + strand, within AO353_09870at 2155.123 kb on + strand, within AO353_09870at 2155.123 kb on + strand, within AO353_09870at 2155.124 kb on - strand, within AO353_09870at 2155.124 kb on - strand, within AO353_09870at 2155.124 kb on - strand, within AO353_09870at 2155.124 kb on - strand, within AO353_09870at 2155.124 kb on - strand, within AO353_09870at 2155.124 kb on - strand, within AO353_09870at 2155.124 kb on - strand, within AO353_09870at 2155.125 kb on + strand, within AO353_09870at 2155.201 kb on + strand, within AO353_09870at 2155.201 kb on + strand, within AO353_09870at 2155.201 kb on + strand, within AO353_09870at 2155.202 kb on - strand, within AO353_09870at 2155.202 kb on - strand, within AO353_09870at 2155.224 kb on + strand, within AO353_09870at 2155.225 kb on - strand, within AO353_09870at 2155.225 kb on - strand, within AO353_09870at 2155.225 kb on - strand, within AO353_09870at 2155.225 kb on - strand, within AO353_09870at 2155.225 kb on - strand, within AO353_09870at 2155.225 kb on - strand, within AO353_09870at 2155.240 kb on + strand, within AO353_09870at 2155.241 kb on - strand, within AO353_09870at 2155.242 kb on + strand, within AO353_09870at 2155.242 kb on + strand, within AO353_09870at 2155.242 kb on + strand, within AO353_09870at 2155.243 kb on - strand, within AO353_09870at 2155.243 kb on - strand, within AO353_09870at 2155.243 kb on - strand, within AO353_09870at 2155.265 kb on - strand, within AO353_09870at 2155.265 kb on - strand, within AO353_09870at 2155.389 kb on + strand, within AO353_09870at 2155.389 kb on + strand, within AO353_09870at 2155.390 kb on - strand, within AO353_09870at 2155.390 kb on - strand, within AO353_09870at 2155.390 kb on - strand, within AO353_09870at 2155.448 kb on + strand, within AO353_09870at 2155.448 kb on + strand, within AO353_09870at 2155.448 kb on + strand, within AO353_09870at 2155.448 kb on + strand, within AO353_09870at 2155.449 kb on - strand, within AO353_09870at 2155.449 kb on - strand, within AO353_09870at 2155.449 kb on - strand, within AO353_09870at 2155.449 kb on - strand, within AO353_09870at 2155.524 kb on + strand, within AO353_09870at 2155.524 kb on + strand, within AO353_09870at 2155.524 kb on + strand, within AO353_09870at 2155.525 kb on - strand, within AO353_09870at 2155.525 kb on - strand, within AO353_09870at 2155.525 kb on - strand, within AO353_09870at 2155.525 kb on - strand, within AO353_09870at 2155.525 kb on - strand, within AO353_09870at 2155.555 kb on + strandat 2155.555 kb on + strandat 2155.555 kb on + strandat 2155.555 kb on + strandat 2155.555 kb on + strandat 2155.556 kb on - strandat 2155.556 kb on - strandat 2155.556 kb on - strandat 2155.557 kb on + strandat 2155.557 kb on + strandat 2155.557 kb on + strandat 2155.557 kb on + strandat 2155.557 kb on + strandat 2155.557 kb on + strandat 2155.558 kb on - strandat 2155.558 kb on - strandat 2155.558 kb on - strandat 2155.558 kb on - strandat 2155.558 kb on - strandat 2155.558 kb on - strandat 2155.558 kb on - strandat 2155.561 kb on + strandat 2155.561 kb on + strandat 2155.561 kb on + strandat 2155.561 kb on + strandat 2155.561 kb on + strandat 2155.561 kb on + strandat 2155.561 kb on + strandat 2155.561 kb on + strandat 2155.561 kb on + strandat 2155.561 kb on + strandat 2155.561 kb on + strandat 2155.561 kb on + strandat 2155.561 kb on + strandat 2155.561 kb on + strandat 2155.562 kb on - strandat 2155.562 kb on - strandat 2155.562 kb on - strandat 2155.562 kb on - strandat 2155.562 kb on - strandat 2155.562 kb on - strandat 2155.562 kb on - strandat 2155.562 kb on - strandat 2155.562 kb on - strandat 2155.562 kb on - strandat 2155.562 kb on - strandat 2155.562 kb on - strandat 2155.562 kb on - strandat 2155.627 kb on + strandat 2155.627 kb on + strandat 2155.627 kb on + strandat 2155.627 kb on + strandat 2155.627 kb on + strandat 2155.627 kb on + strandat 2155.627 kb on + strandat 2155.627 kb on + strandat 2155.627 kb on + strandat 2155.628 kb on - strandat 2155.628 kb on - strandat 2155.628 kb on - strandat 2155.628 kb on - strandat 2155.628 kb on - strandat 2155.628 kb on - strandat 2155.628 kb on - strandat 2155.628 kb on - strandat 2155.628 kb on - strandat 2155.628 kb on - strandat 2155.628 kb on - strandat 2155.628 kb on - strandat 2155.628 kb on - strandat 2155.628 kb on - strandat 2155.628 kb on - strandat 2155.628 kb on - strandat 2155.665 kb on - strandat 2155.665 kb on - strandat 2155.665 kb on - strandat 2155.686 kb on + strandat 2155.687 kb on - strandat 2155.843 kb on + strandat 2155.843 kb on + strandat 2155.843 kb on + strandat 2155.843 kb on + strandat 2155.843 kb on + strandat 2155.844 kb on - strandat 2155.844 kb on - strandat 2155.844 kb on - strandat 2155.844 kb on - strandat 2155.844 kb on - strandat 2155.844 kb on - strandat 2155.858 kb on + strandat 2155.859 kb on - strandat 2155.933 kb on + strand, within AO353_09875at 2155.933 kb on + strand, within AO353_09875at 2155.933 kb on + strand, within AO353_09875at 2156.237 kb on + strandat 2156.237 kb on + strandat 2156.237 kb on + strandat 2156.237 kb on + strandat 2156.237 kb on + strandat 2156.237 kb on + strandat 2156.237 kb on + strandat 2156.237 kb on + strandat 2156.237 kb on + strandat 2156.252 kb on + strandat 2156.252 kb on + strandat 2156.252 kb on + strandat 2156.253 kb on - strandat 2156.253 kb on - strandat 2156.253 kb on - strandat 2156.253 kb on - strandat 2156.253 kb on - strandat 2156.253 kb on - strandat 2156.381 kb on + strandat 2156.381 kb on + strandat 2156.400 kb on + strandat 2156.400 kb on + strandat 2156.408 kb on + strandat 2156.408 kb on + strandat 2156.408 kb on + strandat 2156.408 kb on + strandat 2156.408 kb on + strandat 2156.408 kb on + strandat 2156.408 kb on + strandat 2156.408 kb on + strandat 2156.408 kb on + strandat 2156.408 kb on + strandat 2156.408 kb on + strandat 2156.408 kb on + strandat 2156.408 kb on + strandat 2156.408 kb on + strandat 2156.408 kb on + strandat 2156.408 kb on + strandat 2156.409 kb on - strandat 2156.409 kb on - strandat 2156.409 kb on - strandat 2156.409 kb on - strandat 2156.409 kb on - strandat 2156.409 kb on - strandat 2156.409 kb on - strandat 2156.409 kb on - strandat 2156.409 kb on - strandat 2156.409 kb on - strandat 2156.409 kb on - strandat 2156.409 kb on - strandat 2156.409 kb on - strandat 2156.409 kb on - strandat 2156.409 kb on - strandat 2156.409 kb on - strandat 2156.409 kb on - strandat 2156.497 kb on - strandat 2156.497 kb on - strandat 2156.497 kb on - strandat 2156.497 kb on - strandat 2156.497 kb on - strandat 2156.497 kb on - strandat 2156.497 kb on - strandat 2156.497 kb on - strandat 2156.497 kb on - strandat 2156.497 kb on - strandat 2156.513 kb on + strandat 2156.514 kb on - strandat 2156.514 kb on - strandat 2156.571 kb on + strandat 2156.572 kb on - strandat 2156.596 kb on + strandat 2156.596 kb on + strandat 2156.596 kb on + strandat 2156.596 kb on + strandat 2156.596 kb on + strandat 2156.596 kb on + strandat 2156.596 kb on + strandat 2156.596 kb on + strandat 2156.596 kb on + strandat 2156.597 kb on - strandat 2156.597 kb on - strandat 2156.600 kb on + strandat 2156.600 kb on + strandat 2156.600 kb on + strandat 2156.600 kb on + strandat 2156.600 kb on + strandat 2156.600 kb on + strandat 2156.600 kb on + strandat 2156.600 kb on + strandat 2156.601 kb on - strandat 2156.601 kb on - strandat 2156.612 kb on - strandat 2156.657 kb on + strandat 2156.657 kb on + strandat 2156.657 kb on + strandat 2156.657 kb on + strandat 2156.657 kb on + strandat 2156.657 kb on + strandat 2156.657 kb on + strandat 2156.657 kb on + strandat 2156.657 kb on + strandat 2156.657 kb on + strandat 2156.658 kb on - strandat 2156.658 kb on - strandat 2156.658 kb on - strandat 2156.658 kb on - strandat 2156.658 kb on - strandat 2156.658 kb on - strandat 2156.658 kb on - strandat 2156.658 kb on - strandat 2156.658 kb on - strandat 2156.658 kb on - strandat 2156.658 kb on - strandat 2156.658 kb on - strandat 2156.658 kb on - strandat 2156.658 kb on - strandat 2156.658 kb on - strandat 2156.753 kb on + strand, within AO353_09880at 2156.753 kb on + strand, within AO353_09880at 2156.753 kb on + strand, within AO353_09880at 2156.898 kb on + strand, within AO353_09880at 2156.898 kb on + strand, within AO353_09880at 2156.899 kb on - strand, within AO353_09880at 2156.899 kb on - strand, within AO353_09880at 2156.914 kb on + strand, within AO353_09880at 2156.914 kb on + strand, within AO353_09880at 2156.914 kb on + strand, within AO353_09880at 2156.914 kb on + strand, within AO353_09880at 2156.914 kb on + strand, within AO353_09880at 2156.914 kb on + strand, within AO353_09880at 2156.914 kb on + strand, within AO353_09880at 2156.914 kb on + strand, within AO353_09880at 2156.914 kb on + strand, within AO353_09880at 2156.914 kb on + strand, within AO353_09880at 2156.914 kb on + strand, within AO353_09880at 2156.915 kb on - strand, within AO353_09880at 2156.915 kb on - strand, within AO353_09880at 2156.915 kb on - strand, within AO353_09880at 2156.915 kb on - strand, within AO353_09880at 2156.915 kb on - strand, within AO353_09880

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
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2,154,945 + AO353_09870 0.24 -1.2
2,154,945 + AO353_09870 0.24 -1.2
2,154,945 + AO353_09870 0.24 -1.0
2,154,945 + AO353_09870 0.24 -0.8
2,154,945 + AO353_09870 0.24 -0.9
2,154,945 + AO353_09870 0.24 -0.5
2,154,945 + AO353_09870 0.24 -1.5
2,154,946 - AO353_09870 0.24 +0.7
2,154,946 - AO353_09870 0.24 -1.7
2,154,946 - AO353_09870 0.24 +0.1
2,154,946 - AO353_09870 0.24 +0.4
2,155,123 + AO353_09870 0.44 -1.5
2,155,123 + AO353_09870 0.44 +0.7
2,155,123 + AO353_09870 0.44 -0.7
2,155,124 - AO353_09870 0.44 +0.8
2,155,124 - AO353_09870 0.44 -0.8
2,155,124 - AO353_09870 0.44 +0.2
2,155,124 - AO353_09870 0.44 +1.1
2,155,124 - AO353_09870 0.44 -0.4
2,155,124 - AO353_09870 0.44 +0.3
2,155,124 - AO353_09870 0.44 -1.0
2,155,125 + AO353_09870 0.44 +0.9
2,155,201 + AO353_09870 0.52 +1.8
2,155,201 + AO353_09870 0.52 -0.5
2,155,201 + AO353_09870 0.52 -0.5
2,155,202 - AO353_09870 0.53 +1.7
2,155,202 - AO353_09870 0.53 -1.2
2,155,224 + AO353_09870 0.55 +0.3
2,155,225 - AO353_09870 0.55 -0.3
2,155,225 - AO353_09870 0.55 -1.5
2,155,225 - AO353_09870 0.55 -1.3
2,155,225 - AO353_09870 0.55 -1.7
2,155,225 - AO353_09870 0.55 -0.5
2,155,225 - AO353_09870 0.55 -0.2
2,155,240 + AO353_09870 0.57 +1.3
2,155,241 - AO353_09870 0.57 +0.6
2,155,242 + AO353_09870 0.57 +0.3
2,155,242 + AO353_09870 0.57 -0.6
2,155,242 + AO353_09870 0.57 -1.2
2,155,243 - AO353_09870 0.57 -1.3
2,155,243 - AO353_09870 0.57 +1.3
2,155,243 - AO353_09870 0.57 +0.9
2,155,265 - AO353_09870 0.60 +0.3
2,155,265 - AO353_09870 0.60 +0.9
2,155,389 + AO353_09870 0.73 +1.7
2,155,389 + AO353_09870 0.73 +1.1
2,155,390 - AO353_09870 0.73 -0.3
2,155,390 - AO353_09870 0.73 -0.3
2,155,390 - AO353_09870 0.73 -1.2
2,155,448 + AO353_09870 0.80 -1.2
2,155,448 + AO353_09870 0.80 +0.0
2,155,448 + AO353_09870 0.80 -0.9
2,155,448 + AO353_09870 0.80 -2.2
2,155,449 - AO353_09870 0.80 -0.3
2,155,449 - AO353_09870 0.80 -0.2
2,155,449 - AO353_09870 0.80 -1.4
2,155,449 - AO353_09870 0.80 -0.5
2,155,524 + AO353_09870 0.88 +1.2
2,155,524 + AO353_09870 0.88 +0.3
2,155,524 + AO353_09870 0.88 -0.2
2,155,525 - AO353_09870 0.89 -0.0
2,155,525 - AO353_09870 0.89 +0.4
2,155,525 - AO353_09870 0.89 -0.5
2,155,525 - AO353_09870 0.89 -0.9
2,155,525 - AO353_09870 0.89 +0.8
2,155,555 + -0.3
2,155,555 + +0.8
2,155,555 + -1.7
2,155,555 + -0.0
2,155,555 + -0.4
2,155,556 - -0.7
2,155,556 - +1.3
2,155,556 - -1.2
2,155,557 + -0.4
2,155,557 + -1.0
2,155,557 + -0.3
2,155,557 + +0.3
2,155,557 + -0.1
2,155,557 + +0.8
2,155,558 - -1.8
2,155,558 - -0.9
2,155,558 - -0.5
2,155,558 - -0.9
2,155,558 - +0.8
2,155,558 - +0.3
2,155,558 - -0.7
2,155,561 + +1.7
2,155,561 + -1.6
2,155,561 + -1.7
2,155,561 + -0.7
2,155,561 + +0.4
2,155,561 + -0.7
2,155,561 + -0.1
2,155,561 + +1.7
2,155,561 + -0.9
2,155,561 + +0.2
2,155,561 + -0.1
2,155,561 + -1.6
2,155,561 + -0.9
2,155,561 + -0.6
2,155,562 - -0.7
2,155,562 - +0.1
2,155,562 - -0.8
2,155,562 - -0.1
2,155,562 - -1.6
2,155,562 - -0.5
2,155,562 - -0.0
2,155,562 - -0.7
2,155,562 - +1.8
2,155,562 - -0.3
2,155,562 - +0.1
2,155,562 - +0.5
2,155,562 - +1.7
2,155,627 + +0.1
2,155,627 + +0.1
2,155,627 + +0.0
2,155,627 + +1.9
2,155,627 + -1.0
2,155,627 + +0.8
2,155,627 + -0.9
2,155,627 + -1.3
2,155,627 + -0.2
2,155,628 - +0.4
2,155,628 - -0.3
2,155,628 - -1.0
2,155,628 - +0.3
2,155,628 - +0.3
2,155,628 - -0.9
2,155,628 - -0.4
2,155,628 - -0.2
2,155,628 - +0.4
2,155,628 - +0.5
2,155,628 - -0.4
2,155,628 - +0.1
2,155,628 - +2.3
2,155,628 - +0.5
2,155,628 - -0.2
2,155,628 - +0.5
2,155,665 - -0.7
2,155,665 - +0.4
2,155,665 - -1.2
2,155,686 + -1.5
2,155,687 - +0.5
2,155,843 + -0.7
2,155,843 + +0.1
2,155,843 + -0.2
2,155,843 + -2.4
2,155,843 + -1.3
2,155,844 - -0.3
2,155,844 - +0.7
2,155,844 - -0.8
2,155,844 - -0.2
2,155,844 - +0.7
2,155,844 - +1.3
2,155,858 + +1.4
2,155,859 - +0.3
2,155,933 + AO353_09875 0.23 +0.4
2,155,933 + AO353_09875 0.23 +0.1
2,155,933 + AO353_09875 0.23 +0.7
2,156,237 + +0.1
2,156,237 + -0.9
2,156,237 + -0.3
2,156,237 + -0.3
2,156,237 + -0.2
2,156,237 + +0.7
2,156,237 + -0.0
2,156,237 + -1.2
2,156,237 + -0.7
2,156,252 + +0.2
2,156,252 + +0.2
2,156,252 + +2.1
2,156,253 - -1.4
2,156,253 - +0.9
2,156,253 - -1.2
2,156,253 - -0.4
2,156,253 - -1.2
2,156,253 - -0.5
2,156,381 + +0.2
2,156,381 + -0.5
2,156,400 + -1.0
2,156,400 + +0.3
2,156,408 + +0.1
2,156,408 + -0.9
2,156,408 + -0.3
2,156,408 + +1.7
2,156,408 + -1.3
2,156,408 + -1.3
2,156,408 + +1.7
2,156,408 + +1.3
2,156,408 + -0.7
2,156,408 + +0.7
2,156,408 + -0.2
2,156,408 + +0.2
2,156,408 + -1.0
2,156,408 + -0.3
2,156,408 + -0.2
2,156,408 + -0.9
2,156,409 - +0.1
2,156,409 - +0.9
2,156,409 - -0.3
2,156,409 - +0.3
2,156,409 - -0.5
2,156,409 - -0.5
2,156,409 - -1.7
2,156,409 - +0.7
2,156,409 - +0.1
2,156,409 - -1.2
2,156,409 - +1.3
2,156,409 - -0.2
2,156,409 - -0.3
2,156,409 - +0.8
2,156,409 - +0.3
2,156,409 - -0.5
2,156,409 - +0.7
2,156,497 - -0.8
2,156,497 - -1.4
2,156,497 - -0.1
2,156,497 - +0.2
2,156,497 - +0.7
2,156,497 - -0.3
2,156,497 - +0.5
2,156,497 - +0.1
2,156,497 - -0.2
2,156,497 - -2.2
2,156,513 + +0.1
2,156,514 - +0.1
2,156,514 - -1.2
2,156,571 + -0.7
2,156,572 - -0.7
2,156,596 + +0.8
2,156,596 + +0.2
2,156,596 + +0.1
2,156,596 + -1.6
2,156,596 + +2.1
2,156,596 + +1.2
2,156,596 + +0.3
2,156,596 + +0.7
2,156,596 + -1.2
2,156,597 - +0.7
2,156,597 - +0.8
2,156,600 + +0.0
2,156,600 + -0.5
2,156,600 + +0.2
2,156,600 + -0.7
2,156,600 + +1.4
2,156,600 + -0.3
2,156,600 + +0.1
2,156,600 + +1.5
2,156,601 - +0.1
2,156,601 - +0.2
2,156,612 - -1.2
2,156,657 + -0.0
2,156,657 + +0.8
2,156,657 + +0.7
2,156,657 + +0.3
2,156,657 + +0.2
2,156,657 + +0.7
2,156,657 + +2.7
2,156,657 + +1.0
2,156,657 + -2.2
2,156,657 + +1.7
2,156,658 - +0.2
2,156,658 - -0.3
2,156,658 - -0.3
2,156,658 - -0.9
2,156,658 - +0.2
2,156,658 - +1.1
2,156,658 - -0.2
2,156,658 - +0.7
2,156,658 - +0.2
2,156,658 - -0.7
2,156,658 - +0.3
2,156,658 - +0.6
2,156,658 - +0.3
2,156,658 - -0.3
2,156,658 - -0.3
2,156,753 + AO353_09880 0.16 -0.6
2,156,753 + AO353_09880 0.16 -0.0
2,156,753 + AO353_09880 0.16 +0.2
2,156,898 + AO353_09880 0.31 -0.4
2,156,898 + AO353_09880 0.31 -0.9
2,156,899 - AO353_09880 0.32 -0.3
2,156,899 - AO353_09880 0.32 +0.2
2,156,914 + AO353_09880 0.33 -0.8
2,156,914 + AO353_09880 0.33 -0.3
2,156,914 + AO353_09880 0.33 -0.5
2,156,914 + AO353_09880 0.33 +1.3
2,156,914 + AO353_09880 0.33 -1.0
2,156,914 + AO353_09880 0.33 -0.3
2,156,914 + AO353_09880 0.33 +1.7
2,156,914 + AO353_09880 0.33 +0.7
2,156,914 + AO353_09880 0.33 +0.5
2,156,914 + AO353_09880 0.33 +0.8
2,156,914 + AO353_09880 0.33 -1.7
2,156,915 - AO353_09880 0.33 +0.3
2,156,915 - AO353_09880 0.33 +0.8
2,156,915 - AO353_09880 0.33 +0.3
2,156,915 - AO353_09880 0.33 -0.7
2,156,915 - AO353_09880 0.33 -1.2

Or see this region's nucleotide sequence