Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_09495

Experiment: L-Aspartic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_09480 and AO353_09485 are separated by 92 nucleotidesAO353_09485 and AO353_09490 are separated by 5 nucleotidesAO353_09490 and AO353_09495 overlap by 1 nucleotidesAO353_09495 and AO353_09500 overlap by 1 nucleotidesAO353_09500 and AO353_09505 are separated by 152 nucleotides AO353_09480: AO353_09480 - hypothetical protein, at 2,080,886 to 2,081,269 _09480 AO353_09485: AO353_09485 - hypothetical protein, at 2,081,362 to 2,081,580 _09485 AO353_09490: AO353_09490 - hypothetical protein, at 2,081,586 to 2,082,017 _09490 AO353_09495: AO353_09495 - hypothetical protein, at 2,082,017 to 2,082,403 _09495 AO353_09500: AO353_09500 - hypothetical protein, at 2,082,403 to 2,082,816 _09500 AO353_09505: AO353_09505 - hypothetical protein, at 2,082,969 to 2,083,355 _09505 Position (kb) 2082 2083Strain fitness (log2 ratio) -2 -1 0 1 2at 2081.025 kb on + strand, within AO353_09480at 2081.025 kb on + strand, within AO353_09480at 2081.025 kb on + strand, within AO353_09480at 2081.025 kb on + strand, within AO353_09480at 2081.026 kb on - strand, within AO353_09480at 2081.026 kb on - strand, within AO353_09480at 2081.026 kb on - strand, within AO353_09480at 2081.026 kb on - strand, within AO353_09480at 2081.061 kb on + strand, within AO353_09480at 2081.061 kb on + strand, within AO353_09480at 2081.061 kb on + strand, within AO353_09480at 2081.062 kb on - strand, within AO353_09480at 2081.062 kb on - strand, within AO353_09480at 2081.062 kb on - strand, within AO353_09480at 2081.062 kb on - strand, within AO353_09480at 2081.187 kb on + strand, within AO353_09480at 2081.187 kb on + strand, within AO353_09480at 2081.187 kb on + strand, within AO353_09480at 2081.187 kb on + strand, within AO353_09480at 2081.187 kb on + strand, within AO353_09480at 2081.187 kb on + strand, within AO353_09480at 2081.187 kb on + strand, within AO353_09480at 2081.188 kb on - strand, within AO353_09480at 2081.188 kb on - strand, within AO353_09480at 2081.188 kb on - strand, within AO353_09480at 2081.188 kb on - strand, within AO353_09480at 2081.188 kb on - strand, within AO353_09480at 2081.188 kb on - strand, within AO353_09480at 2081.188 kb on - strand, within AO353_09480at 2081.202 kb on + strand, within AO353_09480at 2081.202 kb on + strand, within AO353_09480at 2081.202 kb on + strand, within AO353_09480at 2081.202 kb on + strand, within AO353_09480at 2081.203 kb on - strand, within AO353_09480at 2081.224 kb on + strand, within AO353_09480at 2081.263 kb on + strandat 2081.263 kb on + strandat 2081.263 kb on + strandat 2081.263 kb on + strandat 2081.263 kb on + strandat 2081.263 kb on + strandat 2081.263 kb on + strandat 2081.263 kb on + strandat 2081.278 kb on + strandat 2081.278 kb on + strandat 2081.278 kb on + strandat 2081.278 kb on + strandat 2081.278 kb on + strandat 2081.278 kb on + strandat 2081.278 kb on + strandat 2081.279 kb on - strandat 2081.279 kb on - strandat 2081.279 kb on - strandat 2081.281 kb on + strandat 2081.281 kb on + strandat 2081.282 kb on - strandat 2081.282 kb on - strandat 2081.282 kb on - strandat 2081.282 kb on - strandat 2081.335 kb on + strandat 2081.359 kb on + strandat 2081.359 kb on + strandat 2081.360 kb on - strandat 2081.360 kb on - strandat 2081.360 kb on - strandat 2081.387 kb on + strand, within AO353_09485at 2081.387 kb on + strand, within AO353_09485at 2081.387 kb on + strand, within AO353_09485at 2081.387 kb on + strand, within AO353_09485at 2081.387 kb on + strand, within AO353_09485at 2081.387 kb on + strand, within AO353_09485at 2081.388 kb on - strand, within AO353_09485at 2081.388 kb on - strand, within AO353_09485at 2081.388 kb on - strand, within AO353_09485at 2081.388 kb on - strand, within AO353_09485at 2081.388 kb on - strand, within AO353_09485at 2081.402 kb on + strand, within AO353_09485at 2081.403 kb on - strand, within AO353_09485at 2081.403 kb on - strand, within AO353_09485at 2081.403 kb on - strand, within AO353_09485at 2081.403 kb on - strand, within AO353_09485at 2081.552 kb on + strand, within AO353_09485at 2081.553 kb on - strand, within AO353_09485at 2081.560 kb on + strandat 2081.560 kb on + strandat 2081.605 kb on + strandat 2081.605 kb on + strandat 2081.605 kb on + strandat 2081.606 kb on - strandat 2081.606 kb on - strandat 2081.606 kb on - strandat 2081.628 kb on - strandat 2081.692 kb on + strand, within AO353_09490at 2081.759 kb on - strand, within AO353_09490at 2081.760 kb on + strand, within AO353_09490at 2081.760 kb on + strand, within AO353_09490at 2081.760 kb on + strand, within AO353_09490at 2081.813 kb on - strand, within AO353_09490at 2081.813 kb on - strand, within AO353_09490at 2081.844 kb on + strand, within AO353_09490at 2081.845 kb on - strand, within AO353_09490at 2081.866 kb on + strand, within AO353_09490at 2082.110 kb on - strand, within AO353_09495at 2082.110 kb on - strand, within AO353_09495at 2082.130 kb on - strand, within AO353_09495at 2082.150 kb on - strand, within AO353_09495at 2082.168 kb on + strand, within AO353_09495at 2082.224 kb on + strand, within AO353_09495at 2082.225 kb on - strand, within AO353_09495at 2082.225 kb on - strand, within AO353_09495at 2082.235 kb on - strand, within AO353_09495at 2082.246 kb on + strand, within AO353_09495at 2082.247 kb on - strand, within AO353_09495at 2082.258 kb on + strand, within AO353_09495at 2082.258 kb on + strand, within AO353_09495at 2082.258 kb on + strand, within AO353_09495at 2082.259 kb on - strand, within AO353_09495at 2082.370 kb on + strandat 2082.371 kb on - strandat 2082.502 kb on - strand, within AO353_09500at 2082.517 kb on + strand, within AO353_09500at 2082.517 kb on + strand, within AO353_09500at 2082.518 kb on - strand, within AO353_09500at 2082.518 kb on - strand, within AO353_09500at 2082.518 kb on - strand, within AO353_09500at 2082.518 kb on - strand, within AO353_09500at 2082.518 kb on - strand, within AO353_09500at 2082.518 kb on - strand, within AO353_09500at 2082.518 kb on - strand, within AO353_09500at 2082.518 kb on - strand, within AO353_09500at 2082.591 kb on - strand, within AO353_09500at 2082.629 kb on + strand, within AO353_09500at 2082.629 kb on + strand, within AO353_09500at 2082.630 kb on - strand, within AO353_09500at 2082.630 kb on - strand, within AO353_09500at 2082.679 kb on - strand, within AO353_09500at 2082.683 kb on + strand, within AO353_09500at 2082.789 kb on - strandat 2082.789 kb on - strandat 2082.921 kb on - strandat 2082.978 kb on - strandat 2083.056 kb on - strand, within AO353_09505at 2083.170 kb on + strand, within AO353_09505at 2083.171 kb on - strand, within AO353_09505at 2083.224 kb on + strand, within AO353_09505at 2083.224 kb on + strand, within AO353_09505at 2083.257 kb on - strand, within AO353_09505at 2083.267 kb on + strand, within AO353_09505at 2083.326 kb on - strandat 2083.340 kb on + strandat 2083.348 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
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2,081,025 + AO353_09480 0.36 +0.4
2,081,025 + AO353_09480 0.36 -0.1
2,081,025 + AO353_09480 0.36 -0.7
2,081,025 + AO353_09480 0.36 -0.6
2,081,026 - AO353_09480 0.36 +0.2
2,081,026 - AO353_09480 0.36 -0.2
2,081,026 - AO353_09480 0.36 -0.5
2,081,026 - AO353_09480 0.36 +0.3
2,081,061 + AO353_09480 0.46 +1.3
2,081,061 + AO353_09480 0.46 +1.9
2,081,061 + AO353_09480 0.46 +0.4
2,081,062 - AO353_09480 0.46 -1.0
2,081,062 - AO353_09480 0.46 +0.2
2,081,062 - AO353_09480 0.46 -1.7
2,081,062 - AO353_09480 0.46 +0.2
2,081,187 + AO353_09480 0.78 -0.0
2,081,187 + AO353_09480 0.78 +0.5
2,081,187 + AO353_09480 0.78 -1.2
2,081,187 + AO353_09480 0.78 +0.5
2,081,187 + AO353_09480 0.78 -0.7
2,081,187 + AO353_09480 0.78 -0.3
2,081,187 + AO353_09480 0.78 -0.3
2,081,188 - AO353_09480 0.79 +1.0
2,081,188 - AO353_09480 0.79 +0.1
2,081,188 - AO353_09480 0.79 -0.2
2,081,188 - AO353_09480 0.79 +0.2
2,081,188 - AO353_09480 0.79 -0.2
2,081,188 - AO353_09480 0.79 -0.0
2,081,188 - AO353_09480 0.79 -1.0
2,081,202 + AO353_09480 0.82 +0.4
2,081,202 + AO353_09480 0.82 -0.4
2,081,202 + AO353_09480 0.82 +0.0
2,081,202 + AO353_09480 0.82 -0.8
2,081,203 - AO353_09480 0.83 -2.1
2,081,224 + AO353_09480 0.88 -0.6
2,081,263 + -0.7
2,081,263 + -1.9
2,081,263 + +1.3
2,081,263 + -0.3
2,081,263 + +1.6
2,081,263 + +0.8
2,081,263 + +1.6
2,081,263 + +0.6
2,081,278 + -0.1
2,081,278 + -0.1
2,081,278 + -0.0
2,081,278 + +1.0
2,081,278 + +0.9
2,081,278 + -0.5
2,081,278 + -0.4
2,081,279 - +1.0
2,081,279 - -0.4
2,081,279 - -0.3
2,081,281 + +0.3
2,081,281 + -0.1
2,081,282 - +0.6
2,081,282 - -1.5
2,081,282 - +0.4
2,081,282 - +0.0
2,081,335 + -1.0
2,081,359 + +0.6
2,081,359 + -0.7
2,081,360 - -1.0
2,081,360 - -0.5
2,081,360 - -0.3
2,081,387 + AO353_09485 0.11 +0.4
2,081,387 + AO353_09485 0.11 +1.3
2,081,387 + AO353_09485 0.11 -0.1
2,081,387 + AO353_09485 0.11 +0.6
2,081,387 + AO353_09485 0.11 +1.0
2,081,387 + AO353_09485 0.11 -0.4
2,081,388 - AO353_09485 0.12 +0.7
2,081,388 - AO353_09485 0.12 +0.9
2,081,388 - AO353_09485 0.12 -0.6
2,081,388 - AO353_09485 0.12 -0.4
2,081,388 - AO353_09485 0.12 +1.2
2,081,402 + AO353_09485 0.18 -0.2
2,081,403 - AO353_09485 0.19 -0.4
2,081,403 - AO353_09485 0.19 -0.8
2,081,403 - AO353_09485 0.19 -0.2
2,081,403 - AO353_09485 0.19 +1.0
2,081,552 + AO353_09485 0.87 +2.3
2,081,553 - AO353_09485 0.87 -0.5
2,081,560 + -0.6
2,081,560 + -0.0
2,081,605 + +0.8
2,081,605 + +1.2
2,081,605 + +0.8
2,081,606 - -1.2
2,081,606 - -2.1
2,081,606 - -0.4
2,081,628 - -0.0
2,081,692 + AO353_09490 0.25 -0.9
2,081,759 - AO353_09490 0.40 +0.1
2,081,760 + AO353_09490 0.40 +0.1
2,081,760 + AO353_09490 0.40 +1.0
2,081,760 + AO353_09490 0.40 -1.3
2,081,813 - AO353_09490 0.53 +1.0
2,081,813 - AO353_09490 0.53 +0.0
2,081,844 + AO353_09490 0.60 +0.0
2,081,845 - AO353_09490 0.60 -1.0
2,081,866 + AO353_09490 0.65 +0.6
2,082,110 - AO353_09495 0.24 -0.0
2,082,110 - AO353_09495 0.24 +0.3
2,082,130 - AO353_09495 0.29 -0.6
2,082,150 - AO353_09495 0.34 -0.6
2,082,168 + AO353_09495 0.39 +1.0
2,082,224 + AO353_09495 0.53 -0.8
2,082,225 - AO353_09495 0.54 -1.4
2,082,225 - AO353_09495 0.54 +1.2
2,082,235 - AO353_09495 0.56 +0.3
2,082,246 + AO353_09495 0.59 +0.6
2,082,247 - AO353_09495 0.59 -0.4
2,082,258 + AO353_09495 0.62 +1.6
2,082,258 + AO353_09495 0.62 +1.2
2,082,258 + AO353_09495 0.62 +2.6
2,082,259 - AO353_09495 0.63 +0.5
2,082,370 + +0.3
2,082,371 - -1.0
2,082,502 - AO353_09500 0.24 +0.5
2,082,517 + AO353_09500 0.28 -1.0
2,082,517 + AO353_09500 0.28 +0.6
2,082,518 - AO353_09500 0.28 -0.1
2,082,518 - AO353_09500 0.28 -1.1
2,082,518 - AO353_09500 0.28 -1.6
2,082,518 - AO353_09500 0.28 +0.0
2,082,518 - AO353_09500 0.28 -0.2
2,082,518 - AO353_09500 0.28 -0.5
2,082,518 - AO353_09500 0.28 -0.4
2,082,518 - AO353_09500 0.28 +0.1
2,082,591 - AO353_09500 0.45 +0.6
2,082,629 + AO353_09500 0.55 +0.3
2,082,629 + AO353_09500 0.55 +0.6
2,082,630 - AO353_09500 0.55 +0.6
2,082,630 - AO353_09500 0.55 -0.6
2,082,679 - AO353_09500 0.67 +2.4
2,082,683 + AO353_09500 0.68 -1.1
2,082,789 - +0.3
2,082,789 - +0.0
2,082,921 - +0.3
2,082,978 - -0.2
2,083,056 - AO353_09505 0.22 -0.4
2,083,170 + AO353_09505 0.52 -1.5
2,083,171 - AO353_09505 0.52 -1.6
2,083,224 + AO353_09505 0.66 +0.6
2,083,224 + AO353_09505 0.66 -0.6
2,083,257 - AO353_09505 0.74 -1.5
2,083,267 + AO353_09505 0.77 -0.5
2,083,326 - -0.7
2,083,340 + -0.3
2,083,348 - -1.1

Or see this region's nucleotide sequence