Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_09150

Experiment: L-Aspartic Acid (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_09145 and AO353_09150 are separated by 91 nucleotidesAO353_09150 and AO353_09155 overlap by 29 nucleotides AO353_09145: AO353_09145 - alanine racemase, at 2,009,082 to 2,010,155 _09145 AO353_09150: AO353_09150 - cytochrome C2, at 2,010,247 to 2,010,600 _09150 AO353_09155: AO353_09155 - amino acid dehydrogenase, at 2,010,572 to 2,011,876 _09155 Position (kb) 2010 2011Strain fitness (log2 ratio) -2 -1 0 1 2at 2010.170 kb on - strandat 2010.170 kb on - strandat 2010.170 kb on - strandat 2010.249 kb on - strandat 2010.265 kb on + strandat 2010.533 kb on + strand, within AO353_09150at 2010.534 kb on - strand, within AO353_09150at 2010.534 kb on - strand, within AO353_09150at 2010.534 kb on - strand, within AO353_09150at 2010.534 kb on - strand, within AO353_09150at 2010.534 kb on - strand, within AO353_09150at 2010.641 kb on - strandat 2010.641 kb on - strandat 2010.859 kb on - strand, within AO353_09155at 2010.927 kb on - strand, within AO353_09155at 2010.984 kb on + strand, within AO353_09155at 2010.984 kb on + strand, within AO353_09155at 2010.984 kb on + strand, within AO353_09155at 2010.984 kb on + strand, within AO353_09155at 2010.984 kb on + strand, within AO353_09155at 2010.984 kb on + strand, within AO353_09155at 2010.984 kb on + strand, within AO353_09155at 2010.984 kb on + strand, within AO353_09155at 2010.985 kb on - strand, within AO353_09155at 2010.985 kb on - strand, within AO353_09155at 2010.985 kb on - strand, within AO353_09155at 2010.985 kb on - strand, within AO353_09155at 2011.000 kb on + strand, within AO353_09155at 2011.001 kb on - strand, within AO353_09155at 2011.050 kb on + strand, within AO353_09155at 2011.065 kb on + strand, within AO353_09155at 2011.110 kb on + strand, within AO353_09155at 2011.111 kb on - strand, within AO353_09155at 2011.111 kb on - strand, within AO353_09155at 2011.127 kb on + strand, within AO353_09155at 2011.127 kb on + strand, within AO353_09155at 2011.127 kb on + strand, within AO353_09155at 2011.127 kb on + strand, within AO353_09155at 2011.127 kb on + strand, within AO353_09155at 2011.127 kb on + strand, within AO353_09155at 2011.128 kb on - strand, within AO353_09155at 2011.128 kb on - strand, within AO353_09155at 2011.128 kb on - strand, within AO353_09155at 2011.128 kb on - strand, within AO353_09155at 2011.128 kb on - strand, within AO353_09155at 2011.131 kb on + strand, within AO353_09155at 2011.131 kb on + strand, within AO353_09155at 2011.131 kb on + strand, within AO353_09155at 2011.207 kb on + strand, within AO353_09155at 2011.208 kb on - strand, within AO353_09155at 2011.537 kb on - strand, within AO353_09155

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
remove
2,010,170 - -0.5
2,010,170 - -1.2
2,010,170 - +1.9
2,010,249 - -0.0
2,010,265 + -1.2
2,010,533 + AO353_09150 0.81 +0.8
2,010,534 - AO353_09150 0.81 -1.8
2,010,534 - AO353_09150 0.81 -0.6
2,010,534 - AO353_09150 0.81 -1.3
2,010,534 - AO353_09150 0.81 -0.7
2,010,534 - AO353_09150 0.81 -0.4
2,010,641 - -1.0
2,010,641 - -0.6
2,010,859 - AO353_09155 0.22 -1.7
2,010,927 - AO353_09155 0.27 +1.6
2,010,984 + AO353_09155 0.32 -0.6
2,010,984 + AO353_09155 0.32 +0.1
2,010,984 + AO353_09155 0.32 -1.4
2,010,984 + AO353_09155 0.32 -0.5
2,010,984 + AO353_09155 0.32 +2.0
2,010,984 + AO353_09155 0.32 -0.5
2,010,984 + AO353_09155 0.32 +0.6
2,010,984 + AO353_09155 0.32 -0.1
2,010,985 - AO353_09155 0.32 -0.6
2,010,985 - AO353_09155 0.32 +0.8
2,010,985 - AO353_09155 0.32 +0.2
2,010,985 - AO353_09155 0.32 -2.3
2,011,000 + AO353_09155 0.33 +0.8
2,011,001 - AO353_09155 0.33 +0.8
2,011,050 + AO353_09155 0.37 -0.5
2,011,065 + AO353_09155 0.38 +0.3
2,011,110 + AO353_09155 0.41 +0.5
2,011,111 - AO353_09155 0.41 -0.3
2,011,111 - AO353_09155 0.41 -0.7
2,011,127 + AO353_09155 0.43 -0.5
2,011,127 + AO353_09155 0.43 -0.0
2,011,127 + AO353_09155 0.43 -0.6
2,011,127 + AO353_09155 0.43 -0.2
2,011,127 + AO353_09155 0.43 +1.3
2,011,127 + AO353_09155 0.43 +1.2
2,011,128 - AO353_09155 0.43 +0.7
2,011,128 - AO353_09155 0.43 -0.7
2,011,128 - AO353_09155 0.43 +0.1
2,011,128 - AO353_09155 0.43 +0.1
2,011,128 - AO353_09155 0.43 -0.7
2,011,131 + AO353_09155 0.43 +0.6
2,011,131 + AO353_09155 0.43 -0.7
2,011,131 + AO353_09155 0.43 -0.7
2,011,207 + AO353_09155 0.49 -0.2
2,011,208 - AO353_09155 0.49 +0.3
2,011,537 - AO353_09155 0.74 +1.4

Or see this region's nucleotide sequence