Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_08475

Experiment: L-Aspartic Acid (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_08465 and AO353_08470 are separated by 22 nucleotidesAO353_08470 and AO353_08475 are separated by 144 nucleotidesAO353_08475 and AO353_08480 are separated by 123 nucleotidesAO353_08480 and AO353_08485 are separated by 39 nucleotides AO353_08465: AO353_08465 - phosphoenolpyruvate-protein phosphotransferase, at 1,860,626 to 1,862,905 _08465 AO353_08470: AO353_08470 - RNA pyrophosphohydrolase, at 1,862,928 to 1,863,407 _08470 AO353_08475: AO353_08475 - phosphoserine phosphatase, at 1,863,552 to 1,864,208 _08475 AO353_08480: AO353_08480 - hypothetical protein, at 1,864,332 to 1,864,757 _08480 AO353_08485: AO353_08485 - threonine dehydratase, at 1,864,797 to 1,866,311 _08485 Position (kb) 1863 1864 1865Strain fitness (log2 ratio) -2 -1 0 1 2at 1862.586 kb on + strand, within AO353_08465at 1862.587 kb on - strand, within AO353_08465at 1862.613 kb on + strand, within AO353_08465at 1862.613 kb on + strand, within AO353_08465at 1862.614 kb on - strand, within AO353_08465at 1862.784 kb on + strandat 1862.784 kb on + strandat 1862.785 kb on - strandat 1862.785 kb on - strandat 1862.785 kb on - strandat 1862.833 kb on + strandat 1862.833 kb on + strandat 1862.834 kb on - strandat 1862.834 kb on - strandat 1862.834 kb on - strandat 1862.834 kb on - strandat 1862.834 kb on - strandat 1862.869 kb on + strandat 1862.869 kb on + strandat 1862.870 kb on - strandat 1862.870 kb on - strandat 1862.896 kb on + strandat 1862.896 kb on + strandat 1862.896 kb on + strandat 1862.896 kb on + strandat 1862.897 kb on - strandat 1862.897 kb on - strandat 1862.897 kb on - strandat 1862.897 kb on - strandat 1862.897 kb on - strandat 1862.897 kb on - strandat 1862.940 kb on + strandat 1862.940 kb on + strandat 1862.941 kb on - strandat 1863.022 kb on + strand, within AO353_08470at 1863.022 kb on + strand, within AO353_08470at 1863.022 kb on + strand, within AO353_08470at 1863.022 kb on + strand, within AO353_08470at 1863.022 kb on + strand, within AO353_08470at 1863.023 kb on - strand, within AO353_08470at 1863.056 kb on + strand, within AO353_08470at 1863.057 kb on - strand, within AO353_08470at 1863.256 kb on + strand, within AO353_08470at 1863.257 kb on - strand, within AO353_08470at 1863.290 kb on + strand, within AO353_08470at 1863.291 kb on - strand, within AO353_08470at 1863.478 kb on + strandat 1863.478 kb on + strandat 1863.478 kb on + strandat 1863.478 kb on + strandat 1863.478 kb on + strandat 1863.478 kb on + strandat 1863.478 kb on + strandat 1863.478 kb on + strandat 1863.479 kb on - strandat 1863.479 kb on - strandat 1863.479 kb on - strandat 1863.479 kb on - strandat 1863.479 kb on - strandat 1863.479 kb on - strandat 1863.479 kb on - strandat 1863.479 kb on - strandat 1863.479 kb on - strandat 1863.483 kb on + strandat 1863.483 kb on + strandat 1863.483 kb on + strandat 1863.483 kb on + strandat 1863.484 kb on - strandat 1863.508 kb on + strandat 1863.508 kb on + strandat 1863.509 kb on - strandat 1863.526 kb on - strandat 1863.565 kb on + strandat 1863.566 kb on - strandat 1863.621 kb on + strand, within AO353_08475at 1863.621 kb on + strand, within AO353_08475at 1863.621 kb on + strand, within AO353_08475at 1863.621 kb on + strand, within AO353_08475at 1863.621 kb on + strand, within AO353_08475at 1863.621 kb on + strand, within AO353_08475at 1863.621 kb on + strand, within AO353_08475at 1863.621 kb on + strand, within AO353_08475at 1863.621 kb on + strand, within AO353_08475at 1863.622 kb on - strand, within AO353_08475at 1863.657 kb on + strand, within AO353_08475at 1863.658 kb on - strand, within AO353_08475at 1863.681 kb on + strand, within AO353_08475at 1863.682 kb on - strand, within AO353_08475at 1863.690 kb on + strand, within AO353_08475at 1863.690 kb on + strand, within AO353_08475at 1863.690 kb on + strand, within AO353_08475at 1863.690 kb on + strand, within AO353_08475at 1863.690 kb on + strand, within AO353_08475at 1863.691 kb on - strand, within AO353_08475at 1863.691 kb on - strand, within AO353_08475at 1863.691 kb on - strand, within AO353_08475at 1863.691 kb on - strand, within AO353_08475at 1863.720 kb on + strand, within AO353_08475at 1863.720 kb on + strand, within AO353_08475at 1863.789 kb on + strand, within AO353_08475at 1863.789 kb on + strand, within AO353_08475at 1863.789 kb on + strand, within AO353_08475at 1863.789 kb on + strand, within AO353_08475at 1863.789 kb on + strand, within AO353_08475at 1863.789 kb on + strand, within AO353_08475at 1863.789 kb on + strand, within AO353_08475at 1863.790 kb on - strand, within AO353_08475at 1863.790 kb on - strand, within AO353_08475at 1863.790 kb on - strand, within AO353_08475at 1863.790 kb on - strand, within AO353_08475at 1863.790 kb on - strand, within AO353_08475at 1864.005 kb on + strand, within AO353_08475at 1864.074 kb on + strand, within AO353_08475at 1864.074 kb on + strand, within AO353_08475at 1864.074 kb on + strand, within AO353_08475at 1864.074 kb on + strand, within AO353_08475at 1864.075 kb on - strand, within AO353_08475at 1864.075 kb on - strand, within AO353_08475at 1864.075 kb on - strand, within AO353_08475at 1864.075 kb on - strand, within AO353_08475at 1864.075 kb on - strand, within AO353_08475at 1864.075 kb on - strand, within AO353_08475at 1864.080 kb on + strand, within AO353_08475at 1864.081 kb on - strand, within AO353_08475at 1864.221 kb on + strandat 1864.222 kb on - strandat 1864.222 kb on - strandat 1864.222 kb on - strandat 1864.222 kb on - strandat 1864.222 kb on - strandat 1864.407 kb on - strand, within AO353_08480at 1864.407 kb on - strand, within AO353_08480at 1864.407 kb on - strand, within AO353_08480at 1864.407 kb on - strand, within AO353_08480at 1864.407 kb on - strand, within AO353_08480at 1864.407 kb on - strand, within AO353_08480at 1864.433 kb on + strand, within AO353_08480at 1864.434 kb on - strandat 1864.434 kb on - strand, within AO353_08480at 1864.434 kb on - strand, within AO353_08480at 1864.445 kb on + strand, within AO353_08480at 1864.446 kb on - strand, within AO353_08480at 1864.446 kb on - strand, within AO353_08480at 1864.489 kb on + strand, within AO353_08480at 1864.489 kb on + strand, within AO353_08480at 1864.489 kb on + strand, within AO353_08480at 1864.489 kb on + strand, within AO353_08480at 1864.490 kb on - strand, within AO353_08480at 1864.490 kb on - strand, within AO353_08480at 1864.490 kb on - strand, within AO353_08480at 1864.490 kb on - strand, within AO353_08480at 1864.791 kb on - strandat 1864.791 kb on - strandat 1864.791 kb on - strandat 1864.816 kb on + strandat 1864.816 kb on + strandat 1864.817 kb on - strandat 1864.817 kb on - strandat 1864.817 kb on - strandat 1864.899 kb on + strandat 1864.900 kb on - strandat 1864.900 kb on - strandat 1864.948 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
remove
1,862,586 + AO353_08465 0.86 +0.5
1,862,587 - AO353_08465 0.86 -1.5
1,862,613 + AO353_08465 0.87 -2.1
1,862,613 + AO353_08465 0.87 +1.3
1,862,614 - AO353_08465 0.87 -1.2
1,862,784 + -0.2
1,862,784 + +0.3
1,862,785 - +0.0
1,862,785 - -2.4
1,862,785 - -1.6
1,862,833 + -1.8
1,862,833 + -0.9
1,862,834 - +0.0
1,862,834 - +0.9
1,862,834 - -1.2
1,862,834 - -1.0
1,862,834 - -0.7
1,862,869 + -1.5
1,862,869 + -2.5
1,862,870 - -0.1
1,862,870 - -1.0
1,862,896 + -0.1
1,862,896 + -0.7
1,862,896 + -1.0
1,862,896 + -0.4
1,862,897 - +0.0
1,862,897 - -1.4
1,862,897 - -1.1
1,862,897 - +0.6
1,862,897 - -0.1
1,862,897 - -0.5
1,862,940 + -0.5
1,862,940 + -0.6
1,862,941 - +1.4
1,863,022 + AO353_08470 0.20 -0.8
1,863,022 + AO353_08470 0.20 -0.4
1,863,022 + AO353_08470 0.20 -2.2
1,863,022 + AO353_08470 0.20 -0.1
1,863,022 + AO353_08470 0.20 -1.5
1,863,023 - AO353_08470 0.20 -0.5
1,863,056 + AO353_08470 0.27 +0.5
1,863,057 - AO353_08470 0.27 +0.2
1,863,256 + AO353_08470 0.68 -1.0
1,863,257 - AO353_08470 0.69 -0.1
1,863,290 + AO353_08470 0.75 +0.4
1,863,291 - AO353_08470 0.76 +1.5
1,863,478 + +0.8
1,863,478 + -0.1
1,863,478 + +2.5
1,863,478 + +0.2
1,863,478 + +1.4
1,863,478 + +0.5
1,863,478 + -0.9
1,863,478 + +1.2
1,863,479 - -0.3
1,863,479 - +0.5
1,863,479 - +1.9
1,863,479 - -0.6
1,863,479 - +0.7
1,863,479 - -0.5
1,863,479 - -0.4
1,863,479 - +0.5
1,863,479 - +2.1
1,863,483 + -0.3
1,863,483 + +0.3
1,863,483 + -0.6
1,863,483 + +0.1
1,863,484 - +0.5
1,863,508 + -0.1
1,863,508 + +0.1
1,863,509 - +0.1
1,863,526 - -2.0
1,863,565 + -2.4
1,863,566 - -0.6
1,863,621 + AO353_08475 0.11 -1.6
1,863,621 + AO353_08475 0.11 -1.3
1,863,621 + AO353_08475 0.11 +0.1
1,863,621 + AO353_08475 0.11 -0.9
1,863,621 + AO353_08475 0.11 -1.6
1,863,621 + AO353_08475 0.11 +1.9
1,863,621 + AO353_08475 0.11 -0.1
1,863,621 + AO353_08475 0.11 -1.1
1,863,621 + AO353_08475 0.11 -2.0
1,863,622 - AO353_08475 0.11 -1.6
1,863,657 + AO353_08475 0.16 +1.3
1,863,658 - AO353_08475 0.16 -1.1
1,863,681 + AO353_08475 0.20 -2.4
1,863,682 - AO353_08475 0.20 -1.1
1,863,690 + AO353_08475 0.21 +1.5
1,863,690 + AO353_08475 0.21 -1.7
1,863,690 + AO353_08475 0.21 -0.9
1,863,690 + AO353_08475 0.21 -0.8
1,863,690 + AO353_08475 0.21 +1.5
1,863,691 - AO353_08475 0.21 -1.4
1,863,691 - AO353_08475 0.21 -1.1
1,863,691 - AO353_08475 0.21 -0.1
1,863,691 - AO353_08475 0.21 -1.3
1,863,720 + AO353_08475 0.26 +0.2
1,863,720 + AO353_08475 0.26 -2.5
1,863,789 + AO353_08475 0.36 -2.2
1,863,789 + AO353_08475 0.36 -0.3
1,863,789 + AO353_08475 0.36 -1.9
1,863,789 + AO353_08475 0.36 -0.1
1,863,789 + AO353_08475 0.36 -0.7
1,863,789 + AO353_08475 0.36 -1.1
1,863,789 + AO353_08475 0.36 -0.6
1,863,790 - AO353_08475 0.36 -1.6
1,863,790 - AO353_08475 0.36 -2.1
1,863,790 - AO353_08475 0.36 -0.6
1,863,790 - AO353_08475 0.36 -0.8
1,863,790 - AO353_08475 0.36 +1.2
1,864,005 + AO353_08475 0.69 +0.4
1,864,074 + AO353_08475 0.79 +0.5
1,864,074 + AO353_08475 0.79 -1.9
1,864,074 + AO353_08475 0.79 -2.5
1,864,074 + AO353_08475 0.79 -0.8
1,864,075 - AO353_08475 0.80 -1.5
1,864,075 - AO353_08475 0.80 -1.9
1,864,075 - AO353_08475 0.80 -2.6
1,864,075 - AO353_08475 0.80 -0.9
1,864,075 - AO353_08475 0.80 +0.1
1,864,075 - AO353_08475 0.80 -1.2
1,864,080 + AO353_08475 0.80 -0.5
1,864,081 - AO353_08475 0.81 -2.0
1,864,221 + +0.1
1,864,222 - +0.2
1,864,222 - +0.5
1,864,222 - +2.2
1,864,222 - -1.2
1,864,222 - -2.1
1,864,407 - AO353_08480 0.18 +2.5
1,864,407 - AO353_08480 0.18 +0.2
1,864,407 - AO353_08480 0.18 +2.5
1,864,407 - AO353_08480 0.18 -0.3
1,864,407 - AO353_08480 0.18 -0.3
1,864,407 - AO353_08480 0.18 +0.5
1,864,433 + AO353_08480 0.24 -0.2
1,864,434 - +0.2
1,864,434 - AO353_08480 0.24 -0.9
1,864,434 - AO353_08480 0.24 -1.4
1,864,445 + AO353_08480 0.27 +0.9
1,864,446 - AO353_08480 0.27 -0.1
1,864,446 - AO353_08480 0.27 -0.3
1,864,489 + AO353_08480 0.37 -1.3
1,864,489 + AO353_08480 0.37 +0.0
1,864,489 + AO353_08480 0.37 -1.0
1,864,489 + AO353_08480 0.37 -0.5
1,864,490 - AO353_08480 0.37 -0.6
1,864,490 - AO353_08480 0.37 -1.0
1,864,490 - AO353_08480 0.37 -0.5
1,864,490 - AO353_08480 0.37 +0.2
1,864,791 - +0.8
1,864,791 - -1.3
1,864,791 - -0.5
1,864,816 + -0.5
1,864,816 + -0.3
1,864,817 - +2.5
1,864,817 - +0.2
1,864,817 - -1.5
1,864,899 + -0.3
1,864,900 - -0.0
1,864,900 - +0.9
1,864,948 + -1.4

Or see this region's nucleotide sequence