Experiment: L-Aspartic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_08465 and AO353_08470 are separated by 22 nucleotides AO353_08470 and AO353_08475 are separated by 144 nucleotides AO353_08475 and AO353_08480 are separated by 123 nucleotides AO353_08480 and AO353_08485 are separated by 39 nucleotides
AO353_08465: AO353_08465 - phosphoenolpyruvate-protein phosphotransferase, at 1,860,626 to 1,862,905
_08465
AO353_08470: AO353_08470 - RNA pyrophosphohydrolase, at 1,862,928 to 1,863,407
_08470
AO353_08475: AO353_08475 - phosphoserine phosphatase, at 1,863,552 to 1,864,208
_08475
AO353_08480: AO353_08480 - hypothetical protein, at 1,864,332 to 1,864,757
_08480
AO353_08485: AO353_08485 - threonine dehydratase, at 1,864,797 to 1,866,311
_08485
Position (kb)
1863
1864
1865 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1862.586 kb on + strand, within AO353_08465 at 1862.587 kb on - strand, within AO353_08465 at 1862.613 kb on + strand, within AO353_08465 at 1862.613 kb on + strand, within AO353_08465 at 1862.614 kb on - strand, within AO353_08465 at 1862.784 kb on + strand at 1862.784 kb on + strand at 1862.785 kb on - strand at 1862.785 kb on - strand at 1862.785 kb on - strand at 1862.833 kb on + strand at 1862.833 kb on + strand at 1862.834 kb on - strand at 1862.834 kb on - strand at 1862.834 kb on - strand at 1862.834 kb on - strand at 1862.834 kb on - strand at 1862.869 kb on + strand at 1862.869 kb on + strand at 1862.870 kb on - strand at 1862.870 kb on - strand at 1862.896 kb on + strand at 1862.896 kb on + strand at 1862.896 kb on + strand at 1862.896 kb on + strand at 1862.897 kb on - strand at 1862.897 kb on - strand at 1862.897 kb on - strand at 1862.897 kb on - strand at 1862.897 kb on - strand at 1862.897 kb on - strand at 1862.940 kb on + strand at 1862.940 kb on + strand at 1862.941 kb on - strand at 1863.022 kb on + strand, within AO353_08470 at 1863.022 kb on + strand, within AO353_08470 at 1863.022 kb on + strand, within AO353_08470 at 1863.022 kb on + strand, within AO353_08470 at 1863.022 kb on + strand, within AO353_08470 at 1863.023 kb on - strand, within AO353_08470 at 1863.056 kb on + strand, within AO353_08470 at 1863.057 kb on - strand, within AO353_08470 at 1863.256 kb on + strand, within AO353_08470 at 1863.257 kb on - strand, within AO353_08470 at 1863.290 kb on + strand, within AO353_08470 at 1863.291 kb on - strand, within AO353_08470 at 1863.478 kb on + strand at 1863.478 kb on + strand at 1863.478 kb on + strand at 1863.478 kb on + strand at 1863.478 kb on + strand at 1863.478 kb on + strand at 1863.478 kb on + strand at 1863.478 kb on + strand at 1863.479 kb on - strand at 1863.479 kb on - strand at 1863.479 kb on - strand at 1863.479 kb on - strand at 1863.479 kb on - strand at 1863.479 kb on - strand at 1863.479 kb on - strand at 1863.479 kb on - strand at 1863.479 kb on - strand at 1863.483 kb on + strand at 1863.483 kb on + strand at 1863.483 kb on + strand at 1863.483 kb on + strand at 1863.484 kb on - strand at 1863.508 kb on + strand at 1863.508 kb on + strand at 1863.509 kb on - strand at 1863.526 kb on - strand at 1863.565 kb on + strand at 1863.566 kb on - strand at 1863.621 kb on + strand, within AO353_08475 at 1863.621 kb on + strand, within AO353_08475 at 1863.621 kb on + strand, within AO353_08475 at 1863.621 kb on + strand, within AO353_08475 at 1863.621 kb on + strand, within AO353_08475 at 1863.621 kb on + strand, within AO353_08475 at 1863.621 kb on + strand, within AO353_08475 at 1863.621 kb on + strand, within AO353_08475 at 1863.621 kb on + strand, within AO353_08475 at 1863.622 kb on - strand, within AO353_08475 at 1863.657 kb on + strand, within AO353_08475 at 1863.658 kb on - strand, within AO353_08475 at 1863.681 kb on + strand, within AO353_08475 at 1863.682 kb on - strand, within AO353_08475 at 1863.690 kb on + strand, within AO353_08475 at 1863.690 kb on + strand, within AO353_08475 at 1863.690 kb on + strand, within AO353_08475 at 1863.690 kb on + strand, within AO353_08475 at 1863.690 kb on + strand, within AO353_08475 at 1863.691 kb on - strand, within AO353_08475 at 1863.691 kb on - strand, within AO353_08475 at 1863.691 kb on - strand, within AO353_08475 at 1863.691 kb on - strand, within AO353_08475 at 1863.720 kb on + strand, within AO353_08475 at 1863.720 kb on + strand, within AO353_08475 at 1863.789 kb on + strand, within AO353_08475 at 1863.789 kb on + strand, within AO353_08475 at 1863.789 kb on + strand, within AO353_08475 at 1863.789 kb on + strand, within AO353_08475 at 1863.789 kb on + strand, within AO353_08475 at 1863.789 kb on + strand, within AO353_08475 at 1863.789 kb on + strand, within AO353_08475 at 1863.790 kb on - strand, within AO353_08475 at 1863.790 kb on - strand, within AO353_08475 at 1863.790 kb on - strand, within AO353_08475 at 1863.790 kb on - strand, within AO353_08475 at 1863.790 kb on - strand, within AO353_08475 at 1864.005 kb on + strand, within AO353_08475 at 1864.074 kb on + strand, within AO353_08475 at 1864.074 kb on + strand, within AO353_08475 at 1864.074 kb on + strand, within AO353_08475 at 1864.074 kb on + strand, within AO353_08475 at 1864.075 kb on - strand, within AO353_08475 at 1864.075 kb on - strand, within AO353_08475 at 1864.075 kb on - strand, within AO353_08475 at 1864.075 kb on - strand, within AO353_08475 at 1864.075 kb on - strand, within AO353_08475 at 1864.075 kb on - strand, within AO353_08475 at 1864.080 kb on + strand, within AO353_08475 at 1864.081 kb on - strand, within AO353_08475 at 1864.221 kb on + strand at 1864.222 kb on - strand at 1864.222 kb on - strand at 1864.222 kb on - strand at 1864.222 kb on - strand at 1864.222 kb on - strand at 1864.407 kb on - strand, within AO353_08480 at 1864.407 kb on - strand, within AO353_08480 at 1864.407 kb on - strand, within AO353_08480 at 1864.407 kb on - strand, within AO353_08480 at 1864.407 kb on - strand, within AO353_08480 at 1864.407 kb on - strand, within AO353_08480 at 1864.433 kb on + strand, within AO353_08480 at 1864.434 kb on - strand at 1864.434 kb on - strand, within AO353_08480 at 1864.434 kb on - strand, within AO353_08480 at 1864.445 kb on + strand, within AO353_08480 at 1864.446 kb on - strand, within AO353_08480 at 1864.446 kb on - strand, within AO353_08480 at 1864.489 kb on + strand, within AO353_08480 at 1864.489 kb on + strand, within AO353_08480 at 1864.489 kb on + strand, within AO353_08480 at 1864.489 kb on + strand, within AO353_08480 at 1864.490 kb on - strand, within AO353_08480 at 1864.490 kb on - strand, within AO353_08480 at 1864.490 kb on - strand, within AO353_08480 at 1864.490 kb on - strand, within AO353_08480 at 1864.791 kb on - strand at 1864.791 kb on - strand at 1864.791 kb on - strand at 1864.816 kb on + strand at 1864.816 kb on + strand at 1864.817 kb on - strand at 1864.817 kb on - strand at 1864.817 kb on - strand at 1864.899 kb on + strand at 1864.900 kb on - strand at 1864.900 kb on - strand at 1864.948 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Aspartic Acid (C) remove 1,862,586 + AO353_08465 0.86 +0.5 1,862,587 - AO353_08465 0.86 -1.5 1,862,613 + AO353_08465 0.87 -2.1 1,862,613 + AO353_08465 0.87 +1.3 1,862,614 - AO353_08465 0.87 -1.2 1,862,784 + -0.2 1,862,784 + +0.3 1,862,785 - +0.0 1,862,785 - -2.4 1,862,785 - -1.6 1,862,833 + -1.8 1,862,833 + -0.9 1,862,834 - +0.0 1,862,834 - +0.9 1,862,834 - -1.2 1,862,834 - -1.0 1,862,834 - -0.7 1,862,869 + -1.5 1,862,869 + -2.5 1,862,870 - -0.1 1,862,870 - -1.0 1,862,896 + -0.1 1,862,896 + -0.7 1,862,896 + -1.0 1,862,896 + -0.4 1,862,897 - +0.0 1,862,897 - -1.4 1,862,897 - -1.1 1,862,897 - +0.6 1,862,897 - -0.1 1,862,897 - -0.5 1,862,940 + -0.5 1,862,940 + -0.6 1,862,941 - +1.4 1,863,022 + AO353_08470 0.20 -0.8 1,863,022 + AO353_08470 0.20 -0.4 1,863,022 + AO353_08470 0.20 -2.2 1,863,022 + AO353_08470 0.20 -0.1 1,863,022 + AO353_08470 0.20 -1.5 1,863,023 - AO353_08470 0.20 -0.5 1,863,056 + AO353_08470 0.27 +0.5 1,863,057 - AO353_08470 0.27 +0.2 1,863,256 + AO353_08470 0.68 -1.0 1,863,257 - AO353_08470 0.69 -0.1 1,863,290 + AO353_08470 0.75 +0.4 1,863,291 - AO353_08470 0.76 +1.5 1,863,478 + +0.8 1,863,478 + -0.1 1,863,478 + +2.5 1,863,478 + +0.2 1,863,478 + +1.4 1,863,478 + +0.5 1,863,478 + -0.9 1,863,478 + +1.2 1,863,479 - -0.3 1,863,479 - +0.5 1,863,479 - +1.9 1,863,479 - -0.6 1,863,479 - +0.7 1,863,479 - -0.5 1,863,479 - -0.4 1,863,479 - +0.5 1,863,479 - +2.1 1,863,483 + -0.3 1,863,483 + +0.3 1,863,483 + -0.6 1,863,483 + +0.1 1,863,484 - +0.5 1,863,508 + -0.1 1,863,508 + +0.1 1,863,509 - +0.1 1,863,526 - -2.0 1,863,565 + -2.4 1,863,566 - -0.6 1,863,621 + AO353_08475 0.11 -1.6 1,863,621 + AO353_08475 0.11 -1.3 1,863,621 + AO353_08475 0.11 +0.1 1,863,621 + AO353_08475 0.11 -0.9 1,863,621 + AO353_08475 0.11 -1.6 1,863,621 + AO353_08475 0.11 +1.9 1,863,621 + AO353_08475 0.11 -0.1 1,863,621 + AO353_08475 0.11 -1.1 1,863,621 + AO353_08475 0.11 -2.0 1,863,622 - AO353_08475 0.11 -1.6 1,863,657 + AO353_08475 0.16 +1.3 1,863,658 - AO353_08475 0.16 -1.1 1,863,681 + AO353_08475 0.20 -2.4 1,863,682 - AO353_08475 0.20 -1.1 1,863,690 + AO353_08475 0.21 +1.5 1,863,690 + AO353_08475 0.21 -1.7 1,863,690 + AO353_08475 0.21 -0.9 1,863,690 + AO353_08475 0.21 -0.8 1,863,690 + AO353_08475 0.21 +1.5 1,863,691 - AO353_08475 0.21 -1.4 1,863,691 - AO353_08475 0.21 -1.1 1,863,691 - AO353_08475 0.21 -0.1 1,863,691 - AO353_08475 0.21 -1.3 1,863,720 + AO353_08475 0.26 +0.2 1,863,720 + AO353_08475 0.26 -2.5 1,863,789 + AO353_08475 0.36 -2.2 1,863,789 + AO353_08475 0.36 -0.3 1,863,789 + AO353_08475 0.36 -1.9 1,863,789 + AO353_08475 0.36 -0.1 1,863,789 + AO353_08475 0.36 -0.7 1,863,789 + AO353_08475 0.36 -1.1 1,863,789 + AO353_08475 0.36 -0.6 1,863,790 - AO353_08475 0.36 -1.6 1,863,790 - AO353_08475 0.36 -2.1 1,863,790 - AO353_08475 0.36 -0.6 1,863,790 - AO353_08475 0.36 -0.8 1,863,790 - AO353_08475 0.36 +1.2 1,864,005 + AO353_08475 0.69 +0.4 1,864,074 + AO353_08475 0.79 +0.5 1,864,074 + AO353_08475 0.79 -1.9 1,864,074 + AO353_08475 0.79 -2.5 1,864,074 + AO353_08475 0.79 -0.8 1,864,075 - AO353_08475 0.80 -1.5 1,864,075 - AO353_08475 0.80 -1.9 1,864,075 - AO353_08475 0.80 -2.6 1,864,075 - AO353_08475 0.80 -0.9 1,864,075 - AO353_08475 0.80 +0.1 1,864,075 - AO353_08475 0.80 -1.2 1,864,080 + AO353_08475 0.80 -0.5 1,864,081 - AO353_08475 0.81 -2.0 1,864,221 + +0.1 1,864,222 - +0.2 1,864,222 - +0.5 1,864,222 - +2.2 1,864,222 - -1.2 1,864,222 - -2.1 1,864,407 - AO353_08480 0.18 +2.5 1,864,407 - AO353_08480 0.18 +0.2 1,864,407 - AO353_08480 0.18 +2.5 1,864,407 - AO353_08480 0.18 -0.3 1,864,407 - AO353_08480 0.18 -0.3 1,864,407 - AO353_08480 0.18 +0.5 1,864,433 + AO353_08480 0.24 -0.2 1,864,434 - +0.2 1,864,434 - AO353_08480 0.24 -0.9 1,864,434 - AO353_08480 0.24 -1.4 1,864,445 + AO353_08480 0.27 +0.9 1,864,446 - AO353_08480 0.27 -0.1 1,864,446 - AO353_08480 0.27 -0.3 1,864,489 + AO353_08480 0.37 -1.3 1,864,489 + AO353_08480 0.37 +0.0 1,864,489 + AO353_08480 0.37 -1.0 1,864,489 + AO353_08480 0.37 -0.5 1,864,490 - AO353_08480 0.37 -0.6 1,864,490 - AO353_08480 0.37 -1.0 1,864,490 - AO353_08480 0.37 -0.5 1,864,490 - AO353_08480 0.37 +0.2 1,864,791 - +0.8 1,864,791 - -1.3 1,864,791 - -0.5 1,864,816 + -0.5 1,864,816 + -0.3 1,864,817 - +2.5 1,864,817 - +0.2 1,864,817 - -1.5 1,864,899 + -0.3 1,864,900 - -0.0 1,864,900 - +0.9 1,864,948 + -1.4
Or see this region's nucleotide sequence