Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_08345

Experiment: L-Aspartic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_08340 and AO353_08345 are separated by 278 nucleotidesAO353_08345 and AO353_08350 are separated by 102 nucleotides AO353_08340: AO353_08340 - hypothetical protein, at 1,831,344 to 1,833,077 _08340 AO353_08345: AO353_08345 - dihydroxy-acid dehydratase, at 1,833,356 to 1,835,197 _08345 AO353_08350: AO353_08350 - hypothetical protein, at 1,835,300 to 1,836,526 _08350 Position (kb) 1833 1834 1835 1836Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1832.402 kb on + strand, within AO353_08340at 1832.403 kb on - strand, within AO353_08340at 1832.506 kb on + strand, within AO353_08340at 1832.506 kb on + strand, within AO353_08340at 1832.506 kb on + strand, within AO353_08340at 1832.506 kb on + strand, within AO353_08340at 1832.506 kb on + strand, within AO353_08340at 1832.506 kb on + strand, within AO353_08340at 1832.506 kb on + strand, within AO353_08340at 1832.506 kb on + strand, within AO353_08340at 1832.506 kb on + strand, within AO353_08340at 1832.506 kb on + strand, within AO353_08340at 1832.506 kb on + strand, within AO353_08340at 1832.507 kb on - strand, within AO353_08340at 1832.507 kb on - strand, within AO353_08340at 1832.507 kb on - strand, within AO353_08340at 1832.507 kb on - strand, within AO353_08340at 1832.507 kb on - strand, within AO353_08340at 1832.507 kb on - strand, within AO353_08340at 1832.507 kb on - strand, within AO353_08340at 1832.507 kb on - strand, within AO353_08340at 1832.507 kb on - strand, within AO353_08340at 1832.507 kb on - strand, within AO353_08340at 1832.507 kb on - strand, within AO353_08340at 1832.507 kb on - strand, within AO353_08340at 1832.507 kb on - strand, within AO353_08340at 1832.507 kb on - strand, within AO353_08340at 1832.507 kb on - strand, within AO353_08340at 1832.514 kb on + strand, within AO353_08340at 1832.514 kb on + strand, within AO353_08340at 1832.656 kb on + strand, within AO353_08340at 1832.657 kb on - strand, within AO353_08340at 1832.705 kb on - strand, within AO353_08340at 1832.761 kb on + strand, within AO353_08340at 1832.761 kb on + strand, within AO353_08340at 1832.761 kb on + strand, within AO353_08340at 1832.761 kb on + strand, within AO353_08340at 1832.761 kb on + strand, within AO353_08340at 1832.761 kb on + strand, within AO353_08340at 1832.761 kb on + strand, within AO353_08340at 1832.762 kb on - strand, within AO353_08340at 1832.762 kb on - strand, within AO353_08340at 1832.762 kb on - strand, within AO353_08340at 1832.762 kb on - strand, within AO353_08340at 1832.762 kb on - strand, within AO353_08340at 1832.762 kb on - strand, within AO353_08340at 1832.762 kb on - strand, within AO353_08340at 1832.762 kb on - strand, within AO353_08340at 1832.762 kb on - strand, within AO353_08340at 1832.762 kb on - strand, within AO353_08340at 1832.852 kb on + strand, within AO353_08340at 1832.882 kb on + strand, within AO353_08340at 1832.882 kb on + strand, within AO353_08340at 1832.883 kb on - strand, within AO353_08340at 1832.992 kb on + strandat 1832.992 kb on + strandat 1833.007 kb on + strandat 1833.007 kb on + strandat 1833.008 kb on - strandat 1833.008 kb on - strandat 1833.015 kb on + strandat 1833.015 kb on + strandat 1833.015 kb on + strandat 1833.015 kb on + strandat 1833.016 kb on - strandat 1833.046 kb on + strandat 1833.121 kb on + strandat 1833.144 kb on + strandat 1833.145 kb on - strandat 1833.145 kb on - strandat 1833.145 kb on - strandat 1833.145 kb on - strandat 1833.176 kb on + strandat 1833.176 kb on + strandat 1833.177 kb on - strandat 1833.217 kb on + strandat 1833.217 kb on + strandat 1833.218 kb on - strandat 1833.307 kb on + strandat 1833.307 kb on + strandat 1833.307 kb on + strandat 1833.307 kb on + strandat 1833.307 kb on + strandat 1833.307 kb on + strandat 1833.307 kb on + strandat 1833.307 kb on + strandat 1833.307 kb on + strandat 1833.307 kb on + strandat 1833.307 kb on + strandat 1833.307 kb on + strandat 1833.307 kb on + strandat 1833.308 kb on - strandat 1833.308 kb on - strandat 1833.308 kb on - strandat 1833.308 kb on - strandat 1833.308 kb on - strandat 1833.308 kb on - strandat 1833.329 kb on + strandat 1833.329 kb on + strandat 1833.330 kb on - strandat 1833.629 kb on + strand, within AO353_08345at 1833.629 kb on + strand, within AO353_08345at 1833.630 kb on - strand, within AO353_08345at 1833.630 kb on - strand, within AO353_08345at 1833.671 kb on + strand, within AO353_08345at 1833.671 kb on + strand, within AO353_08345at 1833.671 kb on + strand, within AO353_08345at 1833.671 kb on + strand, within AO353_08345at 1833.671 kb on + strand, within AO353_08345at 1833.671 kb on + strand, within AO353_08345at 1833.671 kb on + strand, within AO353_08345at 1833.671 kb on + strand, within AO353_08345at 1833.671 kb on + strand, within AO353_08345at 1833.671 kb on + strand, within AO353_08345at 1833.671 kb on + strand, within AO353_08345at 1833.672 kb on - strand, within AO353_08345at 1833.672 kb on - strand, within AO353_08345at 1833.672 kb on - strand, within AO353_08345at 1833.672 kb on - strand, within AO353_08345at 1833.672 kb on - strand, within AO353_08345at 1833.672 kb on - strand, within AO353_08345at 1833.672 kb on - strand, within AO353_08345at 1833.672 kb on - strand, within AO353_08345at 1833.900 kb on - strand, within AO353_08345at 1834.085 kb on + strand, within AO353_08345at 1834.085 kb on + strand, within AO353_08345at 1834.086 kb on - strand, within AO353_08345at 1834.089 kb on - strand, within AO353_08345at 1834.089 kb on - strand, within AO353_08345at 1834.310 kb on + strand, within AO353_08345at 1834.310 kb on + strand, within AO353_08345at 1834.310 kb on + strand, within AO353_08345at 1834.310 kb on + strand, within AO353_08345at 1834.311 kb on - strand, within AO353_08345at 1834.311 kb on - strand, within AO353_08345at 1834.311 kb on - strand, within AO353_08345at 1834.311 kb on - strand, within AO353_08345at 1834.429 kb on + strand, within AO353_08345at 1834.429 kb on + strand, within AO353_08345at 1834.429 kb on + strand, within AO353_08345at 1834.429 kb on + strand, within AO353_08345at 1834.595 kb on + strand, within AO353_08345at 1834.595 kb on + strand, within AO353_08345at 1834.596 kb on - strand, within AO353_08345at 1834.596 kb on - strand, within AO353_08345at 1834.829 kb on + strand, within AO353_08345at 1834.841 kb on + strand, within AO353_08345at 1834.841 kb on + strand, within AO353_08345at 1834.842 kb on - strand, within AO353_08345at 1834.989 kb on + strand, within AO353_08345at 1834.989 kb on + strand, within AO353_08345at 1834.989 kb on + strand, within AO353_08345at 1834.989 kb on + strand, within AO353_08345at 1834.990 kb on - strand, within AO353_08345at 1834.990 kb on - strand, within AO353_08345at 1835.104 kb on + strandat 1835.104 kb on + strandat 1835.104 kb on + strandat 1835.104 kb on + strandat 1835.104 kb on + strandat 1835.104 kb on + strandat 1835.104 kb on + strandat 1835.104 kb on + strandat 1835.105 kb on - strandat 1835.105 kb on - strandat 1835.105 kb on - strandat 1835.105 kb on - strandat 1835.105 kb on - strandat 1835.105 kb on - strandat 1835.105 kb on - strandat 1835.129 kb on + strandat 1835.129 kb on + strandat 1835.130 kb on - strandat 1835.130 kb on - strandat 1835.166 kb on + strandat 1835.166 kb on + strandat 1835.166 kb on + strandat 1835.166 kb on + strandat 1835.166 kb on + strandat 1835.166 kb on + strandat 1835.166 kb on + strandat 1835.167 kb on - strandat 1835.167 kb on - strandat 1835.167 kb on - strandat 1835.167 kb on - strandat 1835.167 kb on - strandat 1835.167 kb on - strandat 1835.167 kb on - strandat 1835.167 kb on - strandat 1835.167 kb on - strandat 1835.167 kb on - strandat 1835.170 kb on + strandat 1835.170 kb on + strandat 1835.170 kb on + strandat 1835.170 kb on + strandat 1835.170 kb on + strandat 1835.171 kb on - strandat 1835.171 kb on - strandat 1835.171 kb on - strandat 1835.171 kb on - strandat 1835.195 kb on + strandat 1835.195 kb on + strandat 1835.195 kb on + strandat 1835.195 kb on + strandat 1835.196 kb on - strandat 1835.275 kb on + strandat 1835.276 kb on - strandat 1835.276 kb on - strandat 1835.276 kb on - strandat 1835.340 kb on + strandat 1835.341 kb on - strandat 1835.429 kb on - strand, within AO353_08350at 1835.429 kb on - strand, within AO353_08350at 1835.510 kb on - strand, within AO353_08350at 1835.510 kb on - strand, within AO353_08350at 1835.617 kb on + strand, within AO353_08350at 1835.618 kb on - strand, within AO353_08350at 1835.655 kb on + strand, within AO353_08350at 1835.655 kb on + strand, within AO353_08350at 1835.655 kb on + strand, within AO353_08350at 1835.655 kb on + strand, within AO353_08350at 1835.656 kb on - strand, within AO353_08350at 1835.656 kb on - strand, within AO353_08350at 1835.808 kb on + strand, within AO353_08350at 1835.808 kb on + strand, within AO353_08350at 1835.808 kb on + strand, within AO353_08350at 1835.808 kb on + strand, within AO353_08350at 1835.808 kb on + strand, within AO353_08350at 1835.809 kb on - strand, within AO353_08350at 1835.809 kb on - strand, within AO353_08350at 1835.809 kb on - strand, within AO353_08350at 1835.839 kb on + strand, within AO353_08350at 1836.012 kb on + strand, within AO353_08350at 1836.031 kb on - strand, within AO353_08350at 1836.099 kb on + strandat 1836.099 kb on + strand, within AO353_08350at 1836.099 kb on + strand, within AO353_08350at 1836.099 kb on + strand, within AO353_08350at 1836.099 kb on + strand, within AO353_08350at 1836.100 kb on - strand, within AO353_08350at 1836.100 kb on - strand, within AO353_08350at 1836.100 kb on - strand, within AO353_08350at 1836.121 kb on + strand, within AO353_08350at 1836.121 kb on + strand, within AO353_08350at 1836.121 kb on + strand, within AO353_08350at 1836.121 kb on + strand, within AO353_08350at 1836.122 kb on - strand, within AO353_08350at 1836.122 kb on - strand, within AO353_08350at 1836.122 kb on - strand, within AO353_08350at 1836.122 kb on - strand, within AO353_08350at 1836.122 kb on - strand, within AO353_08350at 1836.133 kb on + strand, within AO353_08350at 1836.134 kb on - strand, within AO353_08350at 1836.189 kb on + strand, within AO353_08350at 1836.189 kb on + strand, within AO353_08350

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
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1,832,402 + AO353_08340 0.61 +0.5
1,832,403 - AO353_08340 0.61 -1.8
1,832,506 + AO353_08340 0.67 +0.3
1,832,506 + AO353_08340 0.67 +0.1
1,832,506 + AO353_08340 0.67 +1.1
1,832,506 + AO353_08340 0.67 -1.1
1,832,506 + AO353_08340 0.67 +1.1
1,832,506 + AO353_08340 0.67 +0.5
1,832,506 + AO353_08340 0.67 -1.9
1,832,506 + AO353_08340 0.67 +0.3
1,832,506 + AO353_08340 0.67 +1.0
1,832,506 + AO353_08340 0.67 -0.8
1,832,506 + AO353_08340 0.67 -1.1
1,832,507 - AO353_08340 0.67 +1.1
1,832,507 - AO353_08340 0.67 -0.1
1,832,507 - AO353_08340 0.67 -0.5
1,832,507 - AO353_08340 0.67 +0.1
1,832,507 - AO353_08340 0.67 -0.8
1,832,507 - AO353_08340 0.67 -0.1
1,832,507 - AO353_08340 0.67 -0.8
1,832,507 - AO353_08340 0.67 +1.3
1,832,507 - AO353_08340 0.67 -1.3
1,832,507 - AO353_08340 0.67 -0.7
1,832,507 - AO353_08340 0.67 +0.1
1,832,507 - AO353_08340 0.67 +0.1
1,832,507 - AO353_08340 0.67 +0.0
1,832,507 - AO353_08340 0.67 -2.6
1,832,507 - AO353_08340 0.67 +1.1
1,832,514 + AO353_08340 0.67 -0.6
1,832,514 + AO353_08340 0.67 -0.1
1,832,656 + AO353_08340 0.76 -0.1
1,832,657 - AO353_08340 0.76 +0.9
1,832,705 - AO353_08340 0.78 +0.4
1,832,761 + AO353_08340 0.82 -0.9
1,832,761 + AO353_08340 0.82 -1.2
1,832,761 + AO353_08340 0.82 +0.4
1,832,761 + AO353_08340 0.82 +0.9
1,832,761 + AO353_08340 0.82 +0.3
1,832,761 + AO353_08340 0.82 -0.2
1,832,761 + AO353_08340 0.82 -0.3
1,832,762 - AO353_08340 0.82 +0.5
1,832,762 - AO353_08340 0.82 +1.0
1,832,762 - AO353_08340 0.82 +0.0
1,832,762 - AO353_08340 0.82 -0.5
1,832,762 - AO353_08340 0.82 -0.4
1,832,762 - AO353_08340 0.82 +0.0
1,832,762 - AO353_08340 0.82 -0.2
1,832,762 - AO353_08340 0.82 +1.4
1,832,762 - AO353_08340 0.82 -1.3
1,832,762 - AO353_08340 0.82 -0.1
1,832,852 + AO353_08340 0.87 -0.1
1,832,882 + AO353_08340 0.89 -1.5
1,832,882 + AO353_08340 0.89 -0.2
1,832,883 - AO353_08340 0.89 -0.5
1,832,992 + -1.1
1,832,992 + +1.1
1,833,007 + -1.9
1,833,007 + -0.1
1,833,008 - +0.2
1,833,008 - +1.5
1,833,015 + +0.3
1,833,015 + +0.5
1,833,015 + +0.5
1,833,015 + +0.2
1,833,016 - -0.4
1,833,046 + +0.2
1,833,121 + -0.8
1,833,144 + -0.2
1,833,145 - -1.2
1,833,145 - +0.1
1,833,145 - +0.5
1,833,145 - +0.7
1,833,176 + +0.7
1,833,176 + -2.1
1,833,177 - -1.0
1,833,217 + +1.2
1,833,217 + -0.7
1,833,218 - -1.0
1,833,307 + -0.4
1,833,307 + +0.9
1,833,307 + +0.9
1,833,307 + -0.3
1,833,307 + +0.9
1,833,307 + -1.6
1,833,307 + -0.5
1,833,307 + +1.5
1,833,307 + -0.4
1,833,307 + +0.1
1,833,307 + -0.6
1,833,307 + -0.6
1,833,307 + -2.2
1,833,308 - -1.9
1,833,308 - -0.1
1,833,308 - -0.6
1,833,308 - +1.5
1,833,308 - -1.2
1,833,308 - +0.0
1,833,329 + +0.8
1,833,329 + -0.4
1,833,330 - -1.2
1,833,629 + AO353_08345 0.15 -1.1
1,833,629 + AO353_08345 0.15 -0.6
1,833,630 - AO353_08345 0.15 -0.3
1,833,630 - AO353_08345 0.15 -0.1
1,833,671 + AO353_08345 0.17 -0.1
1,833,671 + AO353_08345 0.17 -1.5
1,833,671 + AO353_08345 0.17 -1.2
1,833,671 + AO353_08345 0.17 -0.3
1,833,671 + AO353_08345 0.17 -2.1
1,833,671 + AO353_08345 0.17 -0.6
1,833,671 + AO353_08345 0.17 -0.8
1,833,671 + AO353_08345 0.17 -2.7
1,833,671 + AO353_08345 0.17 +0.2
1,833,671 + AO353_08345 0.17 -0.6
1,833,671 + AO353_08345 0.17 -0.9
1,833,672 - AO353_08345 0.17 -1.8
1,833,672 - AO353_08345 0.17 -1.6
1,833,672 - AO353_08345 0.17 -0.1
1,833,672 - AO353_08345 0.17 -1.5
1,833,672 - AO353_08345 0.17 -0.8
1,833,672 - AO353_08345 0.17 -2.2
1,833,672 - AO353_08345 0.17 -1.1
1,833,672 - AO353_08345 0.17 -1.3
1,833,900 - AO353_08345 0.30 -2.9
1,834,085 + AO353_08345 0.40 -1.6
1,834,085 + AO353_08345 0.40 +1.9
1,834,086 - AO353_08345 0.40 -0.8
1,834,089 - AO353_08345 0.40 -0.1
1,834,089 - AO353_08345 0.40 -0.3
1,834,310 + AO353_08345 0.52 -0.5
1,834,310 + AO353_08345 0.52 -0.9
1,834,310 + AO353_08345 0.52 -1.6
1,834,310 + AO353_08345 0.52 -0.9
1,834,311 - AO353_08345 0.52 -1.6
1,834,311 - AO353_08345 0.52 -0.3
1,834,311 - AO353_08345 0.52 -1.2
1,834,311 - AO353_08345 0.52 -1.6
1,834,429 + AO353_08345 0.58 +1.5
1,834,429 + AO353_08345 0.58 -1.9
1,834,429 + AO353_08345 0.58 -1.7
1,834,429 + AO353_08345 0.58 +0.5
1,834,595 + AO353_08345 0.67 -2.3
1,834,595 + AO353_08345 0.67 -1.4
1,834,596 - AO353_08345 0.67 -2.5
1,834,596 - AO353_08345 0.67 -0.6
1,834,829 + AO353_08345 0.80 -0.1
1,834,841 + AO353_08345 0.81 -1.2
1,834,841 + AO353_08345 0.81 -1.7
1,834,842 - AO353_08345 0.81 -1.8
1,834,989 + AO353_08345 0.89 -2.1
1,834,989 + AO353_08345 0.89 -1.9
1,834,989 + AO353_08345 0.89 -1.9
1,834,989 + AO353_08345 0.89 +0.5
1,834,990 - AO353_08345 0.89 -0.1
1,834,990 - AO353_08345 0.89 -1.7
1,835,104 + -0.3
1,835,104 + -0.9
1,835,104 + -1.3
1,835,104 + -0.9
1,835,104 + -0.8
1,835,104 + -3.3
1,835,104 + -1.3
1,835,104 + -0.1
1,835,105 - +0.9
1,835,105 - -0.1
1,835,105 - +0.2
1,835,105 - -2.2
1,835,105 - -1.2
1,835,105 - -0.1
1,835,105 - -0.6
1,835,129 + +0.5
1,835,129 + -2.1
1,835,130 - -1.3
1,835,130 - -0.5
1,835,166 + -0.6
1,835,166 + -0.5
1,835,166 + -1.4
1,835,166 + -0.3
1,835,166 + -2.2
1,835,166 + -0.3
1,835,166 + +0.2
1,835,167 - -2.4
1,835,167 - -1.1
1,835,167 - -1.1
1,835,167 - +0.9
1,835,167 - -1.2
1,835,167 - -2.3
1,835,167 - -0.3
1,835,167 - -1.2
1,835,167 - -2.6
1,835,167 - +1.5
1,835,170 + -0.3
1,835,170 + +0.1
1,835,170 + -0.8
1,835,170 + -0.7
1,835,170 + +0.4
1,835,171 - -0.8
1,835,171 - -0.1
1,835,171 - +0.7
1,835,171 - -0.3
1,835,195 + -0.9
1,835,195 + -0.4
1,835,195 + +1.1
1,835,195 + -0.1
1,835,196 - +0.0
1,835,275 + +0.2
1,835,276 - +0.4
1,835,276 - +0.5
1,835,276 - +0.5
1,835,340 + +0.1
1,835,341 - -1.8
1,835,429 - AO353_08350 0.11 -1.3
1,835,429 - AO353_08350 0.11 -1.3
1,835,510 - AO353_08350 0.17 -1.3
1,835,510 - AO353_08350 0.17 -0.6
1,835,617 + AO353_08350 0.26 -0.1
1,835,618 - AO353_08350 0.26 +0.9
1,835,655 + AO353_08350 0.29 +1.5
1,835,655 + AO353_08350 0.29 +1.5
1,835,655 + AO353_08350 0.29 -1.5
1,835,655 + AO353_08350 0.29 +0.5
1,835,656 - AO353_08350 0.29 +0.9
1,835,656 - AO353_08350 0.29 -0.4
1,835,808 + AO353_08350 0.41 -0.8
1,835,808 + AO353_08350 0.41 +0.1
1,835,808 + AO353_08350 0.41 -0.1
1,835,808 + AO353_08350 0.41 -0.7
1,835,808 + AO353_08350 0.41 -0.5
1,835,809 - AO353_08350 0.41 +1.5
1,835,809 - AO353_08350 0.41 +0.5
1,835,809 - AO353_08350 0.41 -0.2
1,835,839 + AO353_08350 0.44 -0.1
1,836,012 + AO353_08350 0.58 +0.2
1,836,031 - AO353_08350 0.60 +0.3
1,836,099 + +2.5
1,836,099 + AO353_08350 0.65 +0.4
1,836,099 + AO353_08350 0.65 -1.1
1,836,099 + AO353_08350 0.65 -0.4
1,836,099 + AO353_08350 0.65 -0.7
1,836,100 - AO353_08350 0.65 +0.3
1,836,100 - AO353_08350 0.65 +0.2
1,836,100 - AO353_08350 0.65 -2.8
1,836,121 + AO353_08350 0.67 -0.3
1,836,121 + AO353_08350 0.67 -0.1
1,836,121 + AO353_08350 0.67 -0.3
1,836,121 + AO353_08350 0.67 +0.5
1,836,122 - AO353_08350 0.67 -0.3
1,836,122 - AO353_08350 0.67 +0.7
1,836,122 - AO353_08350 0.67 -1.7
1,836,122 - AO353_08350 0.67 -1.2
1,836,122 - AO353_08350 0.67 -0.8
1,836,133 + AO353_08350 0.68 +0.7
1,836,134 - AO353_08350 0.68 +0.4
1,836,189 + AO353_08350 0.72 -1.1
1,836,189 + AO353_08350 0.72 +0.2

Or see this region's nucleotide sequence