Experiment: L-Aspartic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_07780 and AO353_07785 are separated by 66 nucleotides AO353_07785 and AO353_07790 overlap by 4 nucleotides
AO353_07780: AO353_07780 - Carnitine ABC transporter, substrate-binding component CaiX (from data) , at 1,714,124 to 1,715,074
_07780
AO353_07785: AO353_07785 - ABC transporter for Carnitine, permease component (from data) , at 1,715,141 to 1,715,986
_07785
AO353_07790: AO353_07790 - ABC transporter for Carnitine, ATPase component (from data) , at 1,715,983 to 1,717,161
_07790
Position (kb)
1715
1716 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1714.215 kb on + strand at 1714.216 kb on - strand at 1714.216 kb on - strand at 1714.292 kb on + strand, within AO353_07780 at 1714.292 kb on + strand, within AO353_07780 at 1714.292 kb on + strand, within AO353_07780 at 1714.293 kb on - strand, within AO353_07780 at 1714.293 kb on - strand, within AO353_07780 at 1714.331 kb on + strand, within AO353_07780 at 1714.331 kb on + strand, within AO353_07780 at 1714.331 kb on + strand, within AO353_07780 at 1714.331 kb on + strand, within AO353_07780 at 1714.331 kb on + strand, within AO353_07780 at 1714.331 kb on + strand, within AO353_07780 at 1714.331 kb on + strand, within AO353_07780 at 1714.331 kb on + strand, within AO353_07780 at 1714.331 kb on + strand, within AO353_07780 at 1714.331 kb on + strand, within AO353_07780 at 1714.332 kb on - strand, within AO353_07780 at 1714.332 kb on - strand, within AO353_07780 at 1714.332 kb on - strand, within AO353_07780 at 1714.332 kb on - strand, within AO353_07780 at 1714.332 kb on - strand, within AO353_07780 at 1714.332 kb on - strand, within AO353_07780 at 1714.332 kb on - strand, within AO353_07780 at 1714.332 kb on - strand, within AO353_07780 at 1714.332 kb on - strand, within AO353_07780 at 1714.332 kb on - strand, within AO353_07780 at 1714.412 kb on + strand, within AO353_07780 at 1714.444 kb on + strand, within AO353_07780 at 1714.444 kb on + strand, within AO353_07780 at 1714.444 kb on + strand, within AO353_07780 at 1714.444 kb on + strand, within AO353_07780 at 1714.444 kb on + strand, within AO353_07780 at 1714.445 kb on - strand, within AO353_07780 at 1714.445 kb on - strand, within AO353_07780 at 1714.445 kb on - strand, within AO353_07780 at 1714.445 kb on - strand, within AO353_07780 at 1714.447 kb on + strand, within AO353_07780 at 1714.447 kb on + strand, within AO353_07780 at 1714.466 kb on + strand, within AO353_07780 at 1714.466 kb on + strand, within AO353_07780 at 1714.466 kb on + strand, within AO353_07780 at 1714.466 kb on + strand, within AO353_07780 at 1714.466 kb on + strand, within AO353_07780 at 1714.467 kb on - strand, within AO353_07780 at 1714.467 kb on - strand, within AO353_07780 at 1714.467 kb on - strand, within AO353_07780 at 1714.467 kb on - strand, within AO353_07780 at 1714.467 kb on - strand, within AO353_07780 at 1714.467 kb on - strand, within AO353_07780 at 1714.493 kb on + strand, within AO353_07780 at 1714.493 kb on + strand, within AO353_07780 at 1714.522 kb on + strand, within AO353_07780 at 1714.523 kb on - strand, within AO353_07780 at 1714.524 kb on + strand, within AO353_07780 at 1714.524 kb on + strand, within AO353_07780 at 1714.525 kb on - strand, within AO353_07780 at 1714.525 kb on - strand, within AO353_07780 at 1714.525 kb on - strand, within AO353_07780 at 1714.559 kb on + strand, within AO353_07780 at 1714.603 kb on + strand, within AO353_07780 at 1714.603 kb on + strand, within AO353_07780 at 1714.603 kb on + strand, within AO353_07780 at 1714.604 kb on - strand, within AO353_07780 at 1714.604 kb on - strand, within AO353_07780 at 1714.604 kb on - strand, within AO353_07780 at 1714.604 kb on - strand, within AO353_07780 at 1714.604 kb on - strand, within AO353_07780 at 1714.769 kb on + strand, within AO353_07780 at 1714.769 kb on + strand, within AO353_07780 at 1714.770 kb on - strand, within AO353_07780 at 1714.770 kb on - strand, within AO353_07780 at 1714.790 kb on + strand, within AO353_07780 at 1714.790 kb on + strand, within AO353_07780 at 1714.790 kb on + strand, within AO353_07780 at 1714.790 kb on + strand, within AO353_07780 at 1714.791 kb on - strand, within AO353_07780 at 1714.899 kb on + strand, within AO353_07780 at 1714.899 kb on + strand, within AO353_07780 at 1714.899 kb on + strand, within AO353_07780 at 1714.900 kb on - strand, within AO353_07780 at 1714.992 kb on + strand at 1714.992 kb on + strand at 1714.992 kb on + strand at 1714.993 kb on - strand at 1714.993 kb on - strand at 1714.999 kb on + strand at 1715.000 kb on - strand at 1715.033 kb on - strand at 1715.073 kb on - strand at 1715.073 kb on - strand at 1715.073 kb on - strand at 1715.137 kb on + strand at 1715.166 kb on + strand at 1715.167 kb on - strand at 1715.175 kb on - strand at 1715.175 kb on - strand at 1715.175 kb on - strand at 1715.175 kb on - strand at 1715.175 kb on - strand at 1715.444 kb on - strand, within AO353_07785 at 1715.444 kb on - strand, within AO353_07785 at 1715.507 kb on + strand, within AO353_07785 at 1715.507 kb on + strand, within AO353_07785 at 1715.507 kb on + strand, within AO353_07785 at 1715.507 kb on + strand, within AO353_07785 at 1715.507 kb on + strand, within AO353_07785 at 1715.507 kb on + strand, within AO353_07785 at 1715.561 kb on + strand, within AO353_07785 at 1715.561 kb on + strand, within AO353_07785 at 1715.562 kb on - strand, within AO353_07785 at 1715.562 kb on - strand, within AO353_07785 at 1715.562 kb on - strand, within AO353_07785 at 1715.572 kb on + strand, within AO353_07785 at 1715.622 kb on + strand, within AO353_07785 at 1715.622 kb on + strand, within AO353_07785 at 1715.623 kb on - strand, within AO353_07785 at 1715.644 kb on + strand, within AO353_07785 at 1715.644 kb on + strand, within AO353_07785 at 1715.644 kb on + strand, within AO353_07785 at 1715.645 kb on - strand, within AO353_07785 at 1715.657 kb on + strand, within AO353_07785 at 1715.657 kb on + strand, within AO353_07785 at 1715.657 kb on + strand, within AO353_07785 at 1715.657 kb on + strand, within AO353_07785 at 1715.658 kb on - strand, within AO353_07785 at 1715.658 kb on - strand, within AO353_07785 at 1715.919 kb on + strand at 1715.919 kb on + strand at 1715.919 kb on + strand at 1715.920 kb on - strand at 1715.920 kb on - strand at 1715.945 kb on - strand at 1715.945 kb on - strand at 1715.945 kb on - strand at 1715.945 kb on - strand at 1715.945 kb on - strand at 1715.945 kb on - strand at 1715.971 kb on - strand at 1715.971 kb on - strand at 1715.990 kb on + strand at 1715.990 kb on + strand at 1715.990 kb on + strand at 1715.990 kb on + strand at 1715.990 kb on + strand at 1715.990 kb on + strand at 1715.990 kb on + strand at 1715.991 kb on - strand at 1715.991 kb on - strand at 1715.991 kb on - strand at 1715.991 kb on - strand at 1715.991 kb on - strand at 1715.991 kb on - strand at 1715.991 kb on - strand at 1715.991 kb on - strand at 1716.016 kb on - strand at 1716.653 kb on + strand, within AO353_07790 at 1716.653 kb on + strand, within AO353_07790 at 1716.653 kb on + strand, within AO353_07790 at 1716.653 kb on + strand, within AO353_07790 at 1716.654 kb on - strand, within AO353_07790 at 1716.727 kb on + strand, within AO353_07790 at 1716.727 kb on + strand, within AO353_07790 at 1716.728 kb on - strand, within AO353_07790 at 1716.728 kb on - strand, within AO353_07790 at 1716.769 kb on + strand, within AO353_07790 at 1716.769 kb on + strand, within AO353_07790 at 1716.769 kb on + strand, within AO353_07790 at 1716.769 kb on + strand, within AO353_07790 at 1716.770 kb on - strand, within AO353_07790 at 1716.770 kb on - strand, within AO353_07790 at 1716.809 kb on + strand, within AO353_07790 at 1716.809 kb on + strand, within AO353_07790 at 1716.809 kb on + strand, within AO353_07790 at 1716.810 kb on - strand, within AO353_07790 at 1716.810 kb on - strand, within AO353_07790 at 1716.810 kb on - strand, within AO353_07790 at 1716.870 kb on - strand, within AO353_07790 at 1716.870 kb on - strand, within AO353_07790
Per-strain Table
Position Strand Gene LocusTag Fraction L-Aspartic Acid (C) remove 1,714,215 + -0.1 1,714,216 - +0.9 1,714,216 - -0.3 1,714,292 + AO353_07780 0.18 +0.5 1,714,292 + AO353_07780 0.18 -0.7 1,714,292 + AO353_07780 0.18 +1.1 1,714,293 - AO353_07780 0.18 -1.7 1,714,293 - AO353_07780 0.18 +0.2 1,714,331 + AO353_07780 0.22 -0.6 1,714,331 + AO353_07780 0.22 +1.2 1,714,331 + AO353_07780 0.22 -0.5 1,714,331 + AO353_07780 0.22 -0.9 1,714,331 + AO353_07780 0.22 -0.7 1,714,331 + AO353_07780 0.22 -0.5 1,714,331 + AO353_07780 0.22 -1.5 1,714,331 + AO353_07780 0.22 -0.3 1,714,331 + AO353_07780 0.22 -0.7 1,714,331 + AO353_07780 0.22 -1.6 1,714,332 - AO353_07780 0.22 -1.0 1,714,332 - AO353_07780 0.22 +0.9 1,714,332 - AO353_07780 0.22 +0.8 1,714,332 - AO353_07780 0.22 -0.1 1,714,332 - AO353_07780 0.22 +1.3 1,714,332 - AO353_07780 0.22 +0.5 1,714,332 - AO353_07780 0.22 -1.8 1,714,332 - AO353_07780 0.22 -2.2 1,714,332 - AO353_07780 0.22 +0.5 1,714,332 - AO353_07780 0.22 -0.2 1,714,412 + AO353_07780 0.30 -0.2 1,714,444 + AO353_07780 0.34 +0.8 1,714,444 + AO353_07780 0.34 +0.7 1,714,444 + AO353_07780 0.34 -1.0 1,714,444 + AO353_07780 0.34 -0.2 1,714,444 + AO353_07780 0.34 -1.1 1,714,445 - AO353_07780 0.34 +0.5 1,714,445 - AO353_07780 0.34 +0.1 1,714,445 - AO353_07780 0.34 -0.3 1,714,445 - AO353_07780 0.34 -1.7 1,714,447 + AO353_07780 0.34 +0.2 1,714,447 + AO353_07780 0.34 +0.5 1,714,466 + AO353_07780 0.36 -0.7 1,714,466 + AO353_07780 0.36 -0.7 1,714,466 + AO353_07780 0.36 -2.2 1,714,466 + AO353_07780 0.36 +0.3 1,714,466 + AO353_07780 0.36 -0.1 1,714,467 - AO353_07780 0.36 +0.3 1,714,467 - AO353_07780 0.36 -0.6 1,714,467 - AO353_07780 0.36 -2.1 1,714,467 - AO353_07780 0.36 +1.0 1,714,467 - AO353_07780 0.36 +0.5 1,714,467 - AO353_07780 0.36 +1.2 1,714,493 + AO353_07780 0.39 -0.5 1,714,493 + AO353_07780 0.39 -0.0 1,714,522 + AO353_07780 0.42 -0.1 1,714,523 - AO353_07780 0.42 -1.0 1,714,524 + AO353_07780 0.42 -0.8 1,714,524 + AO353_07780 0.42 +0.2 1,714,525 - AO353_07780 0.42 -0.3 1,714,525 - AO353_07780 0.42 -0.5 1,714,525 - AO353_07780 0.42 +1.3 1,714,559 + AO353_07780 0.46 +0.6 1,714,603 + AO353_07780 0.50 +0.2 1,714,603 + AO353_07780 0.50 -0.3 1,714,603 + AO353_07780 0.50 -0.5 1,714,604 - AO353_07780 0.50 +0.8 1,714,604 - AO353_07780 0.50 +0.2 1,714,604 - AO353_07780 0.50 +0.2 1,714,604 - AO353_07780 0.50 -0.5 1,714,604 - AO353_07780 0.50 +0.2 1,714,769 + AO353_07780 0.68 -0.3 1,714,769 + AO353_07780 0.68 +0.8 1,714,770 - AO353_07780 0.68 -0.3 1,714,770 - AO353_07780 0.68 -0.2 1,714,790 + AO353_07780 0.70 -0.2 1,714,790 + AO353_07780 0.70 +1.2 1,714,790 + AO353_07780 0.70 +0.1 1,714,790 + AO353_07780 0.70 +0.8 1,714,791 - AO353_07780 0.70 -0.5 1,714,899 + AO353_07780 0.81 -1.0 1,714,899 + AO353_07780 0.81 +0.6 1,714,899 + AO353_07780 0.81 +0.1 1,714,900 - AO353_07780 0.82 -0.4 1,714,992 + -0.6 1,714,992 + +1.1 1,714,992 + -2.0 1,714,993 - -1.3 1,714,993 - +0.6 1,714,999 + +0.1 1,715,000 - +1.2 1,715,033 - -0.3 1,715,073 - -0.6 1,715,073 - +0.5 1,715,073 - -2.3 1,715,137 + -0.0 1,715,166 + +1.0 1,715,167 - -0.4 1,715,175 - +0.2 1,715,175 - -0.5 1,715,175 - +0.2 1,715,175 - +1.2 1,715,175 - -0.3 1,715,444 - AO353_07785 0.36 +0.7 1,715,444 - AO353_07785 0.36 +0.4 1,715,507 + AO353_07785 0.43 +0.7 1,715,507 + AO353_07785 0.43 +1.3 1,715,507 + AO353_07785 0.43 +0.9 1,715,507 + AO353_07785 0.43 +1.1 1,715,507 + AO353_07785 0.43 +3.1 1,715,507 + AO353_07785 0.43 +0.5 1,715,561 + AO353_07785 0.50 +2.5 1,715,561 + AO353_07785 0.50 -1.0 1,715,562 - AO353_07785 0.50 +0.9 1,715,562 - AO353_07785 0.50 +1.5 1,715,562 - AO353_07785 0.50 -1.8 1,715,572 + AO353_07785 0.51 +0.2 1,715,622 + AO353_07785 0.57 +0.0 1,715,622 + AO353_07785 0.57 -0.6 1,715,623 - AO353_07785 0.57 -0.4 1,715,644 + AO353_07785 0.59 +0.4 1,715,644 + AO353_07785 0.59 +0.7 1,715,644 + AO353_07785 0.59 +0.7 1,715,645 - AO353_07785 0.60 -1.1 1,715,657 + AO353_07785 0.61 -0.3 1,715,657 + AO353_07785 0.61 +0.2 1,715,657 + AO353_07785 0.61 -1.2 1,715,657 + AO353_07785 0.61 +1.5 1,715,658 - AO353_07785 0.61 +0.0 1,715,658 - AO353_07785 0.61 -0.4 1,715,919 + +0.2 1,715,919 + -0.8 1,715,919 + +0.9 1,715,920 - -0.7 1,715,920 - +0.0 1,715,945 - -0.4 1,715,945 - +0.3 1,715,945 - -0.3 1,715,945 - -0.9 1,715,945 - +1.5 1,715,945 - -2.2 1,715,971 - +1.5 1,715,971 - -0.1 1,715,990 + +0.8 1,715,990 + +0.2 1,715,990 + +0.6 1,715,990 + -0.2 1,715,990 + -0.4 1,715,990 + +0.7 1,715,990 + +0.9 1,715,991 - +0.2 1,715,991 - +2.5 1,715,991 - +0.3 1,715,991 - -1.0 1,715,991 - +0.3 1,715,991 - -0.1 1,715,991 - +0.4 1,715,991 - -0.8 1,716,016 - -1.4 1,716,653 + AO353_07790 0.57 -0.5 1,716,653 + AO353_07790 0.57 -0.2 1,716,653 + AO353_07790 0.57 -0.1 1,716,653 + AO353_07790 0.57 +0.1 1,716,654 - AO353_07790 0.57 -0.1 1,716,727 + AO353_07790 0.63 +0.0 1,716,727 + AO353_07790 0.63 +0.7 1,716,728 - AO353_07790 0.63 -0.5 1,716,728 - AO353_07790 0.63 -1.3 1,716,769 + AO353_07790 0.67 +1.5 1,716,769 + AO353_07790 0.67 +0.5 1,716,769 + AO353_07790 0.67 -0.7 1,716,769 + AO353_07790 0.67 -0.1 1,716,770 - AO353_07790 0.67 +0.5 1,716,770 - AO353_07790 0.67 +0.1 1,716,809 + AO353_07790 0.70 +0.5 1,716,809 + AO353_07790 0.70 +0.2 1,716,809 + AO353_07790 0.70 -0.3 1,716,810 - AO353_07790 0.70 -0.6 1,716,810 - AO353_07790 0.70 +1.2 1,716,810 - AO353_07790 0.70 -0.1 1,716,870 - AO353_07790 0.75 -0.5 1,716,870 - AO353_07790 0.75 +0.5
Or see this region's nucleotide sequence