Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_07655

Experiment: L-Aspartic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_07650 and AO353_07655 overlap by 4 nucleotidesAO353_07655 and AO353_07660 are separated by 14 nucleotides AO353_07650: AO353_07650 - sarcosine oxidase subunit alpha, at 1,683,124 to 1,686,141 _07650 AO353_07655: AO353_07655 - sarcosine oxidase subunit delta, at 1,686,138 to 1,686,467 _07655 AO353_07660: AO353_07660 - sarcosine oxidase (5,10-methylenetetrahydrofolate-forming), beta subunit (EC 1.5.3.24) (from data), at 1,686,482 to 1,687,732 _07660 Position (kb) 1686 1687Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1685.177 kb on - strand, within AO353_07650at 1685.177 kb on - strand, within AO353_07650at 1685.177 kb on - strand, within AO353_07650at 1685.195 kb on + strand, within AO353_07650at 1685.195 kb on + strand, within AO353_07650at 1685.195 kb on + strand, within AO353_07650at 1685.196 kb on - strand, within AO353_07650at 1685.196 kb on - strand, within AO353_07650at 1685.196 kb on - strand, within AO353_07650at 1685.196 kb on - strand, within AO353_07650at 1685.196 kb on - strand, within AO353_07650at 1685.284 kb on + strand, within AO353_07650at 1685.284 kb on + strand, within AO353_07650at 1685.645 kb on + strand, within AO353_07650at 1685.645 kb on + strand, within AO353_07650at 1685.645 kb on + strand, within AO353_07650at 1685.645 kb on + strand, within AO353_07650at 1685.645 kb on + strand, within AO353_07650at 1685.645 kb on + strand, within AO353_07650at 1685.646 kb on - strand, within AO353_07650at 1685.646 kb on - strand, within AO353_07650at 1685.646 kb on - strand, within AO353_07650at 1685.646 kb on - strand, within AO353_07650at 1685.646 kb on - strand, within AO353_07650at 1685.646 kb on - strand, within AO353_07650at 1685.646 kb on - strand, within AO353_07650at 1685.651 kb on + strand, within AO353_07650at 1685.651 kb on + strand, within AO353_07650at 1685.651 kb on + strand, within AO353_07650at 1685.651 kb on + strand, within AO353_07650at 1685.651 kb on + strand, within AO353_07650at 1685.651 kb on + strand, within AO353_07650at 1685.651 kb on + strand, within AO353_07650at 1685.651 kb on + strand, within AO353_07650at 1685.652 kb on - strand, within AO353_07650at 1685.652 kb on - strand, within AO353_07650at 1685.652 kb on - strand, within AO353_07650at 1685.652 kb on - strand, within AO353_07650at 1685.652 kb on - strand, within AO353_07650at 1685.652 kb on - strand, within AO353_07650at 1685.652 kb on - strand, within AO353_07650at 1685.652 kb on - strand, within AO353_07650at 1685.652 kb on - strand, within AO353_07650at 1685.652 kb on - strand, within AO353_07650at 1685.700 kb on + strand, within AO353_07650at 1685.701 kb on - strand, within AO353_07650at 1685.701 kb on - strand, within AO353_07650at 1685.708 kb on + strand, within AO353_07650at 1685.708 kb on + strand, within AO353_07650at 1685.708 kb on + strand, within AO353_07650at 1685.708 kb on + strand, within AO353_07650at 1685.708 kb on + strand, within AO353_07650at 1685.708 kb on + strand, within AO353_07650at 1685.708 kb on + strand, within AO353_07650at 1685.708 kb on + strand, within AO353_07650at 1685.709 kb on - strand, within AO353_07650at 1685.709 kb on - strand, within AO353_07650at 1685.709 kb on - strand, within AO353_07650at 1685.709 kb on - strand, within AO353_07650at 1685.709 kb on - strand, within AO353_07650at 1685.709 kb on - strand, within AO353_07650at 1685.709 kb on - strand, within AO353_07650at 1685.717 kb on + strand, within AO353_07650at 1685.717 kb on + strand, within AO353_07650at 1685.717 kb on + strand, within AO353_07650at 1685.717 kb on + strand, within AO353_07650at 1685.718 kb on - strand, within AO353_07650at 1685.741 kb on + strand, within AO353_07650at 1685.741 kb on + strand, within AO353_07650at 1685.756 kb on + strand, within AO353_07650at 1685.756 kb on + strand, within AO353_07650at 1685.756 kb on + strand, within AO353_07650at 1685.756 kb on + strand, within AO353_07650at 1685.757 kb on - strand, within AO353_07650at 1685.757 kb on - strand, within AO353_07650at 1685.821 kb on + strand, within AO353_07650at 1685.822 kb on - strand, within AO353_07650at 1685.847 kb on + strandat 1685.864 kb on + strandat 1685.864 kb on + strandat 1685.865 kb on - strandat 1685.893 kb on - strandat 1685.981 kb on + strandat 1685.982 kb on - strandat 1685.982 kb on - strandat 1685.982 kb on - strandat 1686.059 kb on + strandat 1686.059 kb on + strandat 1686.059 kb on + strandat 1686.059 kb on + strandat 1686.060 kb on - strandat 1686.060 kb on - strandat 1686.060 kb on - strandat 1686.060 kb on - strandat 1686.141 kb on + strandat 1686.142 kb on - strandat 1686.142 kb on - strandat 1686.142 kb on - strandat 1686.142 kb on - strandat 1686.142 kb on - strandat 1686.142 kb on - strandat 1686.220 kb on + strand, within AO353_07655at 1686.220 kb on + strand, within AO353_07655at 1686.220 kb on + strand, within AO353_07655at 1686.221 kb on - strand, within AO353_07655at 1686.221 kb on - strand, within AO353_07655at 1686.238 kb on + strand, within AO353_07655at 1686.238 kb on + strand, within AO353_07655at 1686.238 kb on + strand, within AO353_07655at 1686.238 kb on + strand, within AO353_07655at 1686.238 kb on + strand, within AO353_07655at 1686.238 kb on + strand, within AO353_07655at 1686.239 kb on - strand, within AO353_07655at 1686.239 kb on - strand, within AO353_07655at 1686.268 kb on + strand, within AO353_07655at 1686.268 kb on + strand, within AO353_07655at 1686.268 kb on + strand, within AO353_07655at 1686.268 kb on + strand, within AO353_07655at 1686.269 kb on - strand, within AO353_07655at 1686.269 kb on - strand, within AO353_07655at 1686.324 kb on - strand, within AO353_07655at 1686.340 kb on + strand, within AO353_07655at 1686.340 kb on + strand, within AO353_07655at 1686.340 kb on + strand, within AO353_07655at 1686.340 kb on + strand, within AO353_07655at 1686.340 kb on + strand, within AO353_07655at 1686.340 kb on + strand, within AO353_07655at 1686.340 kb on + strand, within AO353_07655at 1686.340 kb on + strand, within AO353_07655at 1686.340 kb on + strand, within AO353_07655at 1686.340 kb on + strand, within AO353_07655at 1686.340 kb on + strand, within AO353_07655at 1686.340 kb on + strand, within AO353_07655at 1686.340 kb on + strand, within AO353_07655at 1686.340 kb on + strand, within AO353_07655at 1686.340 kb on + strand, within AO353_07655at 1686.340 kb on + strand, within AO353_07655at 1686.340 kb on + strand, within AO353_07655at 1686.340 kb on + strand, within AO353_07655at 1686.340 kb on + strand, within AO353_07655at 1686.341 kb on - strand, within AO353_07655at 1686.341 kb on - strand, within AO353_07655at 1686.341 kb on - strand, within AO353_07655at 1686.341 kb on - strand, within AO353_07655at 1686.341 kb on - strand, within AO353_07655at 1686.341 kb on - strand, within AO353_07655at 1686.341 kb on - strand, within AO353_07655at 1686.341 kb on - strand, within AO353_07655at 1686.341 kb on - strand, within AO353_07655at 1686.341 kb on - strand, within AO353_07655at 1686.467 kb on + strandat 1686.467 kb on + strandat 1686.467 kb on + strandat 1686.467 kb on + strandat 1686.467 kb on + strandat 1686.467 kb on + strandat 1686.467 kb on + strandat 1686.468 kb on - strandat 1686.468 kb on - strandat 1686.468 kb on - strandat 1686.468 kb on - strandat 1686.468 kb on - strandat 1686.468 kb on - strandat 1686.483 kb on + strandat 1686.842 kb on - strand, within AO353_07660at 1686.885 kb on + strand, within AO353_07660at 1686.885 kb on + strand, within AO353_07660at 1686.885 kb on + strand, within AO353_07660at 1686.885 kb on + strand, within AO353_07660at 1686.885 kb on + strand, within AO353_07660at 1686.886 kb on - strand, within AO353_07660at 1686.886 kb on - strand, within AO353_07660at 1686.886 kb on - strand, within AO353_07660at 1686.886 kb on - strand, within AO353_07660at 1686.894 kb on - strand, within AO353_07660at 1687.082 kb on + strand, within AO353_07660at 1687.082 kb on + strand, within AO353_07660at 1687.082 kb on + strand, within AO353_07660at 1687.083 kb on - strand, within AO353_07660at 1687.083 kb on - strand, within AO353_07660at 1687.377 kb on + strand, within AO353_07660at 1687.377 kb on + strand, within AO353_07660at 1687.377 kb on + strand, within AO353_07660at 1687.378 kb on - strand, within AO353_07660at 1687.378 kb on - strand, within AO353_07660at 1687.407 kb on + strand, within AO353_07660at 1687.407 kb on + strand, within AO353_07660at 1687.407 kb on + strand, within AO353_07660at 1687.407 kb on + strand, within AO353_07660at 1687.408 kb on - strand, within AO353_07660at 1687.408 kb on - strand, within AO353_07660at 1687.408 kb on - strand, within AO353_07660at 1687.408 kb on - strand, within AO353_07660at 1687.408 kb on - strand, within AO353_07660at 1687.408 kb on - strand, within AO353_07660at 1687.408 kb on - strand, within AO353_07660at 1687.408 kb on - strand, within AO353_07660at 1687.455 kb on + strand, within AO353_07660at 1687.456 kb on - strand, within AO353_07660at 1687.456 kb on - strand, within AO353_07660

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
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1,685,177 - AO353_07650 0.68 +0.1
1,685,177 - AO353_07650 0.68 +0.7
1,685,177 - AO353_07650 0.68 +0.3
1,685,195 + AO353_07650 0.69 -0.1
1,685,195 + AO353_07650 0.69 -0.1
1,685,195 + AO353_07650 0.69 +0.7
1,685,196 - AO353_07650 0.69 -0.9
1,685,196 - AO353_07650 0.69 +1.5
1,685,196 - AO353_07650 0.69 -1.4
1,685,196 - AO353_07650 0.69 -2.2
1,685,196 - AO353_07650 0.69 +0.5
1,685,284 + AO353_07650 0.72 +0.5
1,685,284 + AO353_07650 0.72 -1.9
1,685,645 + AO353_07650 0.84 -0.0
1,685,645 + AO353_07650 0.84 +0.5
1,685,645 + AO353_07650 0.84 +0.5
1,685,645 + AO353_07650 0.84 -0.2
1,685,645 + AO353_07650 0.84 -1.2
1,685,645 + AO353_07650 0.84 -1.5
1,685,646 - AO353_07650 0.84 +2.1
1,685,646 - AO353_07650 0.84 -1.0
1,685,646 - AO353_07650 0.84 -0.7
1,685,646 - AO353_07650 0.84 +0.6
1,685,646 - AO353_07650 0.84 -0.4
1,685,646 - AO353_07650 0.84 +0.5
1,685,646 - AO353_07650 0.84 -1.8
1,685,651 + AO353_07650 0.84 -0.7
1,685,651 + AO353_07650 0.84 -0.4
1,685,651 + AO353_07650 0.84 +1.9
1,685,651 + AO353_07650 0.84 -0.4
1,685,651 + AO353_07650 0.84 -0.1
1,685,651 + AO353_07650 0.84 +1.1
1,685,651 + AO353_07650 0.84 -0.2
1,685,651 + AO353_07650 0.84 -1.8
1,685,652 - AO353_07650 0.84 -0.1
1,685,652 - AO353_07650 0.84 +0.8
1,685,652 - AO353_07650 0.84 +0.2
1,685,652 - AO353_07650 0.84 +0.9
1,685,652 - AO353_07650 0.84 -1.9
1,685,652 - AO353_07650 0.84 -0.2
1,685,652 - AO353_07650 0.84 +0.5
1,685,652 - AO353_07650 0.84 +0.2
1,685,652 - AO353_07650 0.84 +1.1
1,685,652 - AO353_07650 0.84 -0.1
1,685,700 + AO353_07650 0.85 +1.3
1,685,701 - AO353_07650 0.85 -0.5
1,685,701 - AO353_07650 0.85 -0.1
1,685,708 + AO353_07650 0.86 +0.5
1,685,708 + AO353_07650 0.86 +0.1
1,685,708 + AO353_07650 0.86 -0.2
1,685,708 + AO353_07650 0.86 -0.9
1,685,708 + AO353_07650 0.86 +1.0
1,685,708 + AO353_07650 0.86 +0.5
1,685,708 + AO353_07650 0.86 -0.6
1,685,708 + AO353_07650 0.86 +0.4
1,685,709 - AO353_07650 0.86 +0.1
1,685,709 - AO353_07650 0.86 -0.3
1,685,709 - AO353_07650 0.86 -0.5
1,685,709 - AO353_07650 0.86 -2.1
1,685,709 - AO353_07650 0.86 -0.1
1,685,709 - AO353_07650 0.86 +0.7
1,685,709 - AO353_07650 0.86 -1.2
1,685,717 + AO353_07650 0.86 -0.3
1,685,717 + AO353_07650 0.86 +1.1
1,685,717 + AO353_07650 0.86 -0.9
1,685,717 + AO353_07650 0.86 +0.6
1,685,718 - AO353_07650 0.86 -1.4
1,685,741 + AO353_07650 0.87 -0.7
1,685,741 + AO353_07650 0.87 +0.1
1,685,756 + AO353_07650 0.87 -0.1
1,685,756 + AO353_07650 0.87 +0.3
1,685,756 + AO353_07650 0.87 -1.0
1,685,756 + AO353_07650 0.87 -0.1
1,685,757 - AO353_07650 0.87 +2.0
1,685,757 - AO353_07650 0.87 +0.2
1,685,821 + AO353_07650 0.89 +0.1
1,685,822 - AO353_07650 0.89 +0.6
1,685,847 + +0.4
1,685,864 + -1.1
1,685,864 + +2.9
1,685,865 - -0.7
1,685,893 - -0.1
1,685,981 + -0.9
1,685,982 - -0.1
1,685,982 - -0.7
1,685,982 - +0.7
1,686,059 + -0.1
1,686,059 + -0.8
1,686,059 + +2.1
1,686,059 + -0.3
1,686,060 - +1.2
1,686,060 - -1.2
1,686,060 - +0.5
1,686,060 - +0.2
1,686,141 + +0.0
1,686,142 - -1.1
1,686,142 - +0.9
1,686,142 - +0.6
1,686,142 - -0.5
1,686,142 - +0.9
1,686,142 - -0.7
1,686,220 + AO353_07655 0.25 +1.1
1,686,220 + AO353_07655 0.25 -0.3
1,686,220 + AO353_07655 0.25 +0.5
1,686,221 - AO353_07655 0.25 +0.3
1,686,221 - AO353_07655 0.25 +0.0
1,686,238 + AO353_07655 0.30 +1.7
1,686,238 + AO353_07655 0.30 +0.5
1,686,238 + AO353_07655 0.30 +1.0
1,686,238 + AO353_07655 0.30 +0.1
1,686,238 + AO353_07655 0.30 +1.0
1,686,238 + AO353_07655 0.30 -1.2
1,686,239 - AO353_07655 0.31 -0.1
1,686,239 - AO353_07655 0.31 +1.5
1,686,268 + AO353_07655 0.39 -0.1
1,686,268 + AO353_07655 0.39 -0.5
1,686,268 + AO353_07655 0.39 -0.1
1,686,268 + AO353_07655 0.39 +1.0
1,686,269 - AO353_07655 0.40 +0.2
1,686,269 - AO353_07655 0.40 -0.5
1,686,324 - AO353_07655 0.56 +0.4
1,686,340 + AO353_07655 0.61 -0.5
1,686,340 + AO353_07655 0.61 +1.9
1,686,340 + AO353_07655 0.61 +0.5
1,686,340 + AO353_07655 0.61 -0.5
1,686,340 + AO353_07655 0.61 +2.1
1,686,340 + AO353_07655 0.61 -0.1
1,686,340 + AO353_07655 0.61 -0.5
1,686,340 + AO353_07655 0.61 +1.1
1,686,340 + AO353_07655 0.61 +1.5
1,686,340 + AO353_07655 0.61 +0.0
1,686,340 + AO353_07655 0.61 +0.4
1,686,340 + AO353_07655 0.61 +0.0
1,686,340 + AO353_07655 0.61 -0.0
1,686,340 + AO353_07655 0.61 +0.7
1,686,340 + AO353_07655 0.61 +0.9
1,686,340 + AO353_07655 0.61 -0.9
1,686,340 + AO353_07655 0.61 +0.4
1,686,340 + AO353_07655 0.61 +1.1
1,686,340 + AO353_07655 0.61 +0.8
1,686,341 - AO353_07655 0.62 +0.9
1,686,341 - AO353_07655 0.62 -0.5
1,686,341 - AO353_07655 0.62 +1.1
1,686,341 - AO353_07655 0.62 -0.3
1,686,341 - AO353_07655 0.62 -0.5
1,686,341 - AO353_07655 0.62 +0.5
1,686,341 - AO353_07655 0.62 -0.2
1,686,341 - AO353_07655 0.62 -1.2
1,686,341 - AO353_07655 0.62 +1.0
1,686,341 - AO353_07655 0.62 -0.1
1,686,467 + -1.0
1,686,467 + +0.6
1,686,467 + -0.8
1,686,467 + +1.5
1,686,467 + -0.2
1,686,467 + -0.3
1,686,467 + -1.1
1,686,468 - +0.7
1,686,468 - +0.5
1,686,468 - +0.0
1,686,468 - +1.2
1,686,468 - +0.7
1,686,468 - +0.6
1,686,483 + -0.7
1,686,842 - AO353_07660 0.29 -0.7
1,686,885 + AO353_07660 0.32 +1.2
1,686,885 + AO353_07660 0.32 -0.6
1,686,885 + AO353_07660 0.32 -0.3
1,686,885 + AO353_07660 0.32 -0.5
1,686,885 + AO353_07660 0.32 +1.0
1,686,886 - AO353_07660 0.32 -0.3
1,686,886 - AO353_07660 0.32 -0.1
1,686,886 - AO353_07660 0.32 -1.3
1,686,886 - AO353_07660 0.32 -1.2
1,686,894 - AO353_07660 0.33 +0.3
1,687,082 + AO353_07660 0.48 -0.1
1,687,082 + AO353_07660 0.48 -0.6
1,687,082 + AO353_07660 0.48 -0.7
1,687,083 - AO353_07660 0.48 -0.7
1,687,083 - AO353_07660 0.48 -2.1
1,687,377 + AO353_07660 0.72 -0.3
1,687,377 + AO353_07660 0.72 -0.1
1,687,377 + AO353_07660 0.72 -0.9
1,687,378 - AO353_07660 0.72 -2.3
1,687,378 - AO353_07660 0.72 +0.7
1,687,407 + AO353_07660 0.74 -1.4
1,687,407 + AO353_07660 0.74 +1.6
1,687,407 + AO353_07660 0.74 +1.7
1,687,407 + AO353_07660 0.74 -0.5
1,687,408 - AO353_07660 0.74 -0.5
1,687,408 - AO353_07660 0.74 +1.9
1,687,408 - AO353_07660 0.74 -1.2
1,687,408 - AO353_07660 0.74 -0.2
1,687,408 - AO353_07660 0.74 -1.7
1,687,408 - AO353_07660 0.74 +1.1
1,687,408 - AO353_07660 0.74 -0.5
1,687,408 - AO353_07660 0.74 -0.3
1,687,455 + AO353_07660 0.78 +0.0
1,687,456 - AO353_07660 0.78 +1.8
1,687,456 - AO353_07660 0.78 +0.1

Or see this region's nucleotide sequence