Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_07615

Experiment: L-Aspartic Acid (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_07605 and AO353_07610 overlap by 42 nucleotidesAO353_07610 and AO353_07615 are separated by 212 nucleotidesAO353_07615 and AO353_07620 are separated by 224 nucleotidesAO353_07620 and AO353_07625 are separated by 54 nucleotides AO353_07605: AO353_07605 - acyltransferase, at 1,675,393 to 1,676,322 _07605 AO353_07610: AO353_07610 - hypothetical protein, at 1,676,281 to 1,676,844 _07610 AO353_07615: AO353_07615 - hypothetical protein, at 1,677,057 to 1,677,620 _07615 AO353_07620: AO353_07620 - fasciclin, at 1,677,845 to 1,678,438 _07620 AO353_07625: AO353_07625 - RNA polymerase subunit sigma-70, at 1,678,493 to 1,679,125 _07625 Position (kb) 1677 1678Strain fitness (log2 ratio) -2 -1 0 1 2at 1676.065 kb on + strand, within AO353_07605at 1676.246 kb on + strandat 1676.246 kb on + strandat 1676.246 kb on + strandat 1676.246 kb on + strandat 1676.246 kb on + strandat 1676.247 kb on - strandat 1676.247 kb on - strandat 1676.247 kb on - strandat 1676.247 kb on - strandat 1676.247 kb on - strandat 1676.313 kb on + strandat 1676.314 kb on - strandat 1676.320 kb on + strandat 1676.321 kb on - strandat 1676.579 kb on + strand, within AO353_07610at 1676.580 kb on - strand, within AO353_07610at 1677.127 kb on + strand, within AO353_07615at 1677.127 kb on + strand, within AO353_07615at 1677.127 kb on + strand, within AO353_07615at 1677.128 kb on - strand, within AO353_07615at 1677.128 kb on - strand, within AO353_07615at 1677.128 kb on - strand, within AO353_07615at 1677.128 kb on - strand, within AO353_07615at 1677.128 kb on - strand, within AO353_07615at 1677.128 kb on - strand, within AO353_07615at 1677.338 kb on + strand, within AO353_07615at 1677.338 kb on + strand, within AO353_07615at 1677.338 kb on + strand, within AO353_07615at 1677.338 kb on + strand, within AO353_07615at 1677.339 kb on - strand, within AO353_07615at 1677.339 kb on - strand, within AO353_07615at 1677.339 kb on - strand, within AO353_07615at 1677.355 kb on + strand, within AO353_07615at 1677.355 kb on + strand, within AO353_07615at 1677.680 kb on + strandat 1677.681 kb on - strandat 1677.694 kb on - strandat 1677.696 kb on + strandat 1677.696 kb on + strandat 1677.696 kb on + strandat 1677.696 kb on + strandat 1677.696 kb on + strandat 1677.696 kb on + strandat 1677.696 kb on + strandat 1677.697 kb on - strandat 1677.697 kb on - strandat 1677.697 kb on - strandat 1677.697 kb on - strandat 1677.697 kb on - strandat 1677.697 kb on - strandat 1677.697 kb on - strandat 1677.697 kb on - strandat 1677.697 kb on - strandat 1677.697 kb on - strandat 1677.697 kb on - strandat 1677.742 kb on - strandat 1677.791 kb on + strandat 1677.791 kb on + strandat 1677.791 kb on + strandat 1677.791 kb on + strandat 1677.791 kb on + strandat 1677.791 kb on + strandat 1677.791 kb on + strandat 1677.791 kb on + strandat 1677.792 kb on - strandat 1677.792 kb on - strandat 1677.792 kb on - strandat 1677.792 kb on - strandat 1677.792 kb on - strandat 1677.792 kb on - strandat 1677.792 kb on - strandat 1677.792 kb on - strandat 1677.792 kb on - strandat 1677.792 kb on - strandat 1677.792 kb on - strandat 1677.792 kb on - strandat 1677.792 kb on - strandat 1677.792 kb on - strandat 1677.792 kb on - strandat 1677.792 kb on - strandat 1677.792 kb on - strandat 1677.794 kb on - strandat 1677.794 kb on - strandat 1677.832 kb on + strandat 1677.832 kb on + strandat 1677.832 kb on + strandat 1677.832 kb on + strandat 1677.833 kb on - strandat 1677.833 kb on - strandat 1677.833 kb on - strandat 1677.833 kb on - strandat 1677.833 kb on - strandat 1677.833 kb on - strandat 1677.856 kb on + strandat 1677.856 kb on + strandat 1677.857 kb on - strandat 1677.857 kb on - strandat 1677.857 kb on - strandat 1677.862 kb on + strandat 1677.863 kb on - strandat 1677.863 kb on - strandat 1677.863 kb on - strandat 1677.957 kb on + strand, within AO353_07620at 1677.957 kb on + strand, within AO353_07620at 1677.957 kb on + strand, within AO353_07620at 1677.958 kb on - strand, within AO353_07620at 1677.958 kb on - strand, within AO353_07620at 1677.958 kb on - strand, within AO353_07620at 1677.958 kb on - strand, within AO353_07620at 1677.958 kb on - strand, within AO353_07620at 1677.958 kb on - strand, within AO353_07620at 1677.960 kb on + strand, within AO353_07620at 1677.961 kb on - strand, within AO353_07620at 1677.961 kb on - strand, within AO353_07620at 1678.004 kb on - strand, within AO353_07620at 1678.011 kb on + strand, within AO353_07620at 1678.047 kb on + strand, within AO353_07620at 1678.047 kb on + strand, within AO353_07620at 1678.048 kb on - strand, within AO353_07620at 1678.048 kb on - strand, within AO353_07620at 1678.081 kb on + strand, within AO353_07620at 1678.082 kb on - strand, within AO353_07620at 1678.199 kb on + strand, within AO353_07620at 1678.199 kb on + strand, within AO353_07620at 1678.200 kb on - strand, within AO353_07620at 1678.200 kb on - strand, within AO353_07620at 1678.369 kb on + strand, within AO353_07620at 1678.369 kb on + strand, within AO353_07620at 1678.369 kb on + strand, within AO353_07620at 1678.369 kb on + strand, within AO353_07620at 1678.369 kb on + strand, within AO353_07620at 1678.369 kb on + strand, within AO353_07620at 1678.369 kb on + strand, within AO353_07620at 1678.369 kb on + strand, within AO353_07620at 1678.369 kb on + strand, within AO353_07620at 1678.369 kb on + strand, within AO353_07620at 1678.369 kb on + strand, within AO353_07620at 1678.370 kb on - strand, within AO353_07620at 1678.370 kb on - strand, within AO353_07620at 1678.370 kb on - strand, within AO353_07620at 1678.370 kb on - strand, within AO353_07620at 1678.370 kb on - strand, within AO353_07620at 1678.370 kb on - strand, within AO353_07620at 1678.370 kb on - strand, within AO353_07620at 1678.370 kb on - strand, within AO353_07620at 1678.370 kb on - strand, within AO353_07620at 1678.373 kb on + strand, within AO353_07620at 1678.373 kb on + strand, within AO353_07620at 1678.373 kb on + strand, within AO353_07620at 1678.373 kb on + strand, within AO353_07620at 1678.373 kb on + strand, within AO353_07620at 1678.373 kb on + strand, within AO353_07620at 1678.373 kb on + strand, within AO353_07620at 1678.373 kb on + strand, within AO353_07620at 1678.373 kb on + strand, within AO353_07620at 1678.373 kb on + strand, within AO353_07620at 1678.373 kb on + strand, within AO353_07620at 1678.373 kb on + strand, within AO353_07620at 1678.374 kb on - strand, within AO353_07620at 1678.374 kb on - strand, within AO353_07620at 1678.374 kb on - strand, within AO353_07620at 1678.374 kb on - strand, within AO353_07620at 1678.374 kb on - strand, within AO353_07620at 1678.374 kb on - strand, within AO353_07620at 1678.374 kb on - strand, within AO353_07620at 1678.374 kb on - strand, within AO353_07620at 1678.374 kb on - strand, within AO353_07620at 1678.382 kb on + strandat 1678.382 kb on + strandat 1678.383 kb on - strandat 1678.436 kb on + strandat 1678.436 kb on + strandat 1678.436 kb on + strandat 1678.436 kb on + strandat 1678.521 kb on + strandat 1678.522 kb on - strandat 1678.522 kb on - strandat 1678.522 kb on - strandat 1678.522 kb on - strandat 1678.522 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
remove
1,676,065 + AO353_07605 0.72 -1.7
1,676,246 + -0.0
1,676,246 + -0.3
1,676,246 + -0.4
1,676,246 + -1.2
1,676,246 + +1.4
1,676,247 - -1.7
1,676,247 - -0.0
1,676,247 - +0.8
1,676,247 - -0.6
1,676,247 - +0.2
1,676,313 + -0.4
1,676,314 - -0.4
1,676,320 + +0.8
1,676,321 - -0.5
1,676,579 + AO353_07610 0.53 -0.8
1,676,580 - AO353_07610 0.53 -0.4
1,677,127 + AO353_07615 0.12 +1.1
1,677,127 + AO353_07615 0.12 -0.2
1,677,127 + AO353_07615 0.12 -0.2
1,677,128 - AO353_07615 0.13 -0.2
1,677,128 - AO353_07615 0.13 -0.0
1,677,128 - AO353_07615 0.13 +1.3
1,677,128 - AO353_07615 0.13 +2.7
1,677,128 - AO353_07615 0.13 +1.4
1,677,128 - AO353_07615 0.13 +0.3
1,677,338 + AO353_07615 0.50 -0.1
1,677,338 + AO353_07615 0.50 -2.7
1,677,338 + AO353_07615 0.50 -0.3
1,677,338 + AO353_07615 0.50 +0.7
1,677,339 - AO353_07615 0.50 +0.9
1,677,339 - AO353_07615 0.50 -1.0
1,677,339 - AO353_07615 0.50 +0.9
1,677,355 + AO353_07615 0.53 -2.1
1,677,355 + AO353_07615 0.53 +0.9
1,677,680 + -0.1
1,677,681 - -0.1
1,677,694 - +1.1
1,677,696 + -0.5
1,677,696 + +0.9
1,677,696 + -0.3
1,677,696 + -0.7
1,677,696 + +2.5
1,677,696 + +0.8
1,677,696 + +0.2
1,677,697 - +0.3
1,677,697 - -0.9
1,677,697 - +0.4
1,677,697 - +1.5
1,677,697 - +1.1
1,677,697 - +0.9
1,677,697 - -1.0
1,677,697 - +0.3
1,677,697 - +0.7
1,677,697 - -0.1
1,677,697 - +0.0
1,677,742 - -0.5
1,677,791 + -0.2
1,677,791 + +0.7
1,677,791 + +0.7
1,677,791 + +0.7
1,677,791 + -1.0
1,677,791 + -0.7
1,677,791 + -1.8
1,677,791 + +0.0
1,677,792 - +1.1
1,677,792 - -0.6
1,677,792 - +0.5
1,677,792 - -1.2
1,677,792 - +0.1
1,677,792 - -0.5
1,677,792 - -0.5
1,677,792 - -0.5
1,677,792 - -0.9
1,677,792 - -0.3
1,677,792 - -1.4
1,677,792 - +1.5
1,677,792 - -0.9
1,677,792 - -0.0
1,677,792 - -0.9
1,677,792 - +0.7
1,677,792 - +0.7
1,677,794 - +0.3
1,677,794 - +0.5
1,677,832 + +1.1
1,677,832 + +0.1
1,677,832 + +0.0
1,677,832 + +0.7
1,677,833 - +0.2
1,677,833 - -0.3
1,677,833 - -0.9
1,677,833 - +2.5
1,677,833 - -0.7
1,677,833 - -0.3
1,677,856 + +0.0
1,677,856 + -2.2
1,677,857 - +0.5
1,677,857 - +0.6
1,677,857 - -0.3
1,677,862 + -0.1
1,677,863 - +0.3
1,677,863 - -1.0
1,677,863 - +1.1
1,677,957 + AO353_07620 0.19 -0.8
1,677,957 + AO353_07620 0.19 +0.2
1,677,957 + AO353_07620 0.19 -0.7
1,677,958 - AO353_07620 0.19 +0.2
1,677,958 - AO353_07620 0.19 +0.3
1,677,958 - AO353_07620 0.19 -1.9
1,677,958 - AO353_07620 0.19 +0.5
1,677,958 - AO353_07620 0.19 -0.3
1,677,958 - AO353_07620 0.19 +1.6
1,677,960 + AO353_07620 0.19 -1.1
1,677,961 - AO353_07620 0.20 -1.4
1,677,961 - AO353_07620 0.20 +1.2
1,678,004 - AO353_07620 0.27 -0.4
1,678,011 + AO353_07620 0.28 -1.4
1,678,047 + AO353_07620 0.34 -0.3
1,678,047 + AO353_07620 0.34 +1.7
1,678,048 - AO353_07620 0.34 +0.7
1,678,048 - AO353_07620 0.34 -0.3
1,678,081 + AO353_07620 0.40 -0.8
1,678,082 - AO353_07620 0.40 +0.9
1,678,199 + AO353_07620 0.60 +0.9
1,678,199 + AO353_07620 0.60 -0.7
1,678,200 - AO353_07620 0.60 -0.0
1,678,200 - AO353_07620 0.60 -0.6
1,678,369 + AO353_07620 0.88 +0.0
1,678,369 + AO353_07620 0.88 +0.9
1,678,369 + AO353_07620 0.88 +0.6
1,678,369 + AO353_07620 0.88 -0.4
1,678,369 + AO353_07620 0.88 +0.9
1,678,369 + AO353_07620 0.88 +1.9
1,678,369 + AO353_07620 0.88 +0.7
1,678,369 + AO353_07620 0.88 -1.0
1,678,369 + AO353_07620 0.88 -1.2
1,678,369 + AO353_07620 0.88 +0.7
1,678,369 + AO353_07620 0.88 +1.0
1,678,370 - AO353_07620 0.88 -0.1
1,678,370 - AO353_07620 0.88 +0.6
1,678,370 - AO353_07620 0.88 +1.1
1,678,370 - AO353_07620 0.88 +1.5
1,678,370 - AO353_07620 0.88 -0.7
1,678,370 - AO353_07620 0.88 +0.5
1,678,370 - AO353_07620 0.88 -1.2
1,678,370 - AO353_07620 0.88 +0.7
1,678,370 - AO353_07620 0.88 -0.2
1,678,373 + AO353_07620 0.89 +0.9
1,678,373 + AO353_07620 0.89 +0.3
1,678,373 + AO353_07620 0.89 -1.3
1,678,373 + AO353_07620 0.89 +0.9
1,678,373 + AO353_07620 0.89 +0.6
1,678,373 + AO353_07620 0.89 -0.3
1,678,373 + AO353_07620 0.89 +0.4
1,678,373 + AO353_07620 0.89 -0.2
1,678,373 + AO353_07620 0.89 +0.8
1,678,373 + AO353_07620 0.89 -0.3
1,678,373 + AO353_07620 0.89 +1.5
1,678,373 + AO353_07620 0.89 -1.1
1,678,374 - AO353_07620 0.89 -0.5
1,678,374 - AO353_07620 0.89 -1.4
1,678,374 - AO353_07620 0.89 +0.1
1,678,374 - AO353_07620 0.89 +0.1
1,678,374 - AO353_07620 0.89 -1.0
1,678,374 - AO353_07620 0.89 +0.6
1,678,374 - AO353_07620 0.89 +0.2
1,678,374 - AO353_07620 0.89 -0.6
1,678,374 - AO353_07620 0.89 -0.9
1,678,382 + +0.5
1,678,382 + +1.5
1,678,383 - -1.0
1,678,436 + -0.4
1,678,436 + -0.3
1,678,436 + -1.2
1,678,436 + +0.1
1,678,521 + +0.5
1,678,522 - -0.5
1,678,522 - +0.1
1,678,522 - +0.5
1,678,522 - -1.2
1,678,522 - -0.4

Or see this region's nucleotide sequence