Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_07605

Experiment: L-Aspartic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_07595 and AO353_07600 are separated by 59 nucleotidesAO353_07600 and AO353_07605 are separated by 162 nucleotidesAO353_07605 and AO353_07610 overlap by 42 nucleotidesAO353_07610 and AO353_07615 are separated by 212 nucleotides AO353_07595: AO353_07595 - transcriptional regulator, at 1,673,987 to 1,674,667 _07595 AO353_07600: AO353_07600 - ATP-dependent zinc protease, at 1,674,727 to 1,675,230 _07600 AO353_07605: AO353_07605 - acyltransferase, at 1,675,393 to 1,676,322 _07605 AO353_07610: AO353_07610 - hypothetical protein, at 1,676,281 to 1,676,844 _07610 AO353_07615: AO353_07615 - hypothetical protein, at 1,677,057 to 1,677,620 _07615 Position (kb) 1675 1676 1677Strain fitness (log2 ratio) -2 -1 0 1 2at 1674.475 kb on + strand, within AO353_07595at 1674.475 kb on + strand, within AO353_07595at 1674.476 kb on - strand, within AO353_07595at 1674.476 kb on - strand, within AO353_07595at 1674.623 kb on - strandat 1674.658 kb on + strandat 1674.658 kb on + strandat 1674.687 kb on + strandat 1674.687 kb on + strandat 1674.687 kb on + strandat 1674.688 kb on - strandat 1674.688 kb on - strandat 1674.688 kb on - strandat 1674.688 kb on - strandat 1674.688 kb on - strandat 1674.688 kb on - strandat 1674.688 kb on - strandat 1674.741 kb on + strandat 1674.741 kb on + strandat 1674.790 kb on + strand, within AO353_07600at 1674.790 kb on + strand, within AO353_07600at 1674.790 kb on + strand, within AO353_07600at 1674.791 kb on - strand, within AO353_07600at 1674.791 kb on - strand, within AO353_07600at 1674.791 kb on - strand, within AO353_07600at 1674.791 kb on - strand, within AO353_07600at 1674.791 kb on - strand, within AO353_07600at 1674.791 kb on - strand, within AO353_07600at 1674.791 kb on - strand, within AO353_07600at 1674.791 kb on - strand, within AO353_07600at 1674.818 kb on + strand, within AO353_07600at 1675.148 kb on + strand, within AO353_07600at 1675.148 kb on + strand, within AO353_07600at 1675.148 kb on + strand, within AO353_07600at 1675.148 kb on + strand, within AO353_07600at 1675.148 kb on + strandat 1675.149 kb on - strand, within AO353_07600at 1675.149 kb on - strand, within AO353_07600at 1675.149 kb on - strand, within AO353_07600at 1675.149 kb on - strand, within AO353_07600at 1675.149 kb on - strand, within AO353_07600at 1675.149 kb on - strand, within AO353_07600at 1675.155 kb on - strand, within AO353_07600at 1675.163 kb on + strand, within AO353_07600at 1675.163 kb on + strand, within AO353_07600at 1675.164 kb on - strand, within AO353_07600at 1675.232 kb on + strandat 1675.232 kb on + strandat 1675.232 kb on + strandat 1675.232 kb on + strandat 1675.232 kb on + strandat 1675.232 kb on + strandat 1675.232 kb on + strandat 1675.232 kb on + strandat 1675.233 kb on - strandat 1675.233 kb on - strandat 1675.233 kb on - strandat 1675.233 kb on - strandat 1675.233 kb on - strandat 1675.250 kb on + strandat 1675.250 kb on + strandat 1675.250 kb on + strandat 1675.250 kb on + strandat 1675.251 kb on - strandat 1675.266 kb on + strandat 1675.279 kb on + strandat 1675.279 kb on + strandat 1675.279 kb on + strandat 1675.279 kb on + strandat 1675.279 kb on + strandat 1675.280 kb on - strandat 1675.280 kb on - strandat 1675.280 kb on - strandat 1675.280 kb on - strandat 1675.280 kb on - strandat 1675.280 kb on - strandat 1675.357 kb on + strandat 1675.358 kb on - strandat 1675.358 kb on - strandat 1675.379 kb on + strandat 1675.379 kb on + strandat 1675.380 kb on - strandat 1675.380 kb on - strandat 1675.380 kb on - strandat 1675.380 kb on - strandat 1675.380 kb on - strandat 1675.388 kb on + strandat 1675.388 kb on + strandat 1675.388 kb on + strandat 1675.388 kb on + strandat 1675.388 kb on + strandat 1675.388 kb on + strandat 1675.388 kb on + strandat 1675.388 kb on + strandat 1675.388 kb on + strandat 1675.389 kb on - strandat 1675.389 kb on - strandat 1675.389 kb on - strandat 1675.389 kb on - strandat 1675.389 kb on - strandat 1675.389 kb on - strandat 1675.389 kb on - strandat 1675.392 kb on + strandat 1675.392 kb on + strandat 1675.393 kb on - strandat 1675.393 kb on - strandat 1675.393 kb on - strandat 1675.393 kb on - strandat 1675.393 kb on - strandat 1675.393 kb on - strandat 1675.393 kb on - strandat 1675.436 kb on + strandat 1675.436 kb on + strandat 1675.437 kb on - strandat 1675.437 kb on - strandat 1675.437 kb on - strandat 1675.437 kb on - strandat 1675.497 kb on - strand, within AO353_07605at 1675.642 kb on + strand, within AO353_07605at 1675.642 kb on + strand, within AO353_07605at 1675.642 kb on + strand, within AO353_07605at 1675.642 kb on + strand, within AO353_07605at 1675.643 kb on - strand, within AO353_07605at 1675.643 kb on - strand, within AO353_07605at 1675.643 kb on - strand, within AO353_07605at 1675.643 kb on - strand, within AO353_07605at 1675.643 kb on - strand, within AO353_07605at 1675.807 kb on + strand, within AO353_07605at 1675.915 kb on + strand, within AO353_07605at 1675.915 kb on + strand, within AO353_07605at 1675.915 kb on + strand, within AO353_07605at 1675.915 kb on + strand, within AO353_07605at 1675.916 kb on - strand, within AO353_07605at 1675.916 kb on - strand, within AO353_07605at 1675.916 kb on - strand, within AO353_07605at 1675.916 kb on - strand, within AO353_07605at 1675.979 kb on + strand, within AO353_07605at 1675.979 kb on + strand, within AO353_07605at 1675.979 kb on + strand, within AO353_07605at 1675.979 kb on + strand, within AO353_07605at 1675.979 kb on + strand, within AO353_07605at 1675.980 kb on - strand, within AO353_07605at 1675.980 kb on - strand, within AO353_07605at 1675.980 kb on - strand, within AO353_07605at 1675.980 kb on - strand, within AO353_07605at 1676.012 kb on + strand, within AO353_07605at 1676.012 kb on + strand, within AO353_07605at 1676.012 kb on + strand, within AO353_07605at 1676.012 kb on + strand, within AO353_07605at 1676.012 kb on + strand, within AO353_07605at 1676.012 kb on + strand, within AO353_07605at 1676.013 kb on - strand, within AO353_07605at 1676.013 kb on - strand, within AO353_07605at 1676.013 kb on - strand, within AO353_07605at 1676.065 kb on + strand, within AO353_07605at 1676.246 kb on + strandat 1676.246 kb on + strandat 1676.246 kb on + strandat 1676.246 kb on + strandat 1676.246 kb on + strandat 1676.247 kb on - strandat 1676.247 kb on - strandat 1676.247 kb on - strandat 1676.247 kb on - strandat 1676.247 kb on - strandat 1676.313 kb on + strandat 1676.314 kb on - strandat 1676.320 kb on + strandat 1676.321 kb on - strandat 1676.579 kb on + strand, within AO353_07610at 1676.580 kb on - strand, within AO353_07610at 1677.127 kb on + strand, within AO353_07615at 1677.127 kb on + strand, within AO353_07615at 1677.127 kb on + strand, within AO353_07615at 1677.128 kb on - strand, within AO353_07615at 1677.128 kb on - strand, within AO353_07615at 1677.128 kb on - strand, within AO353_07615at 1677.128 kb on - strand, within AO353_07615at 1677.128 kb on - strand, within AO353_07615at 1677.128 kb on - strand, within AO353_07615

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
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1,674,475 + AO353_07595 0.72 -0.6
1,674,475 + AO353_07595 0.72 -1.6
1,674,476 - AO353_07595 0.72 -0.1
1,674,476 - AO353_07595 0.72 -0.0
1,674,623 - +0.4
1,674,658 + +0.1
1,674,658 + +1.1
1,674,687 + +0.3
1,674,687 + -1.0
1,674,687 + -0.3
1,674,688 - -0.3
1,674,688 - +0.5
1,674,688 - +0.4
1,674,688 - +1.5
1,674,688 - +0.7
1,674,688 - -1.7
1,674,688 - -0.2
1,674,741 + -0.5
1,674,741 + +0.7
1,674,790 + AO353_07600 0.12 +0.6
1,674,790 + AO353_07600 0.12 -0.8
1,674,790 + AO353_07600 0.12 -0.8
1,674,791 - AO353_07600 0.13 +0.3
1,674,791 - AO353_07600 0.13 +0.7
1,674,791 - AO353_07600 0.13 +0.7
1,674,791 - AO353_07600 0.13 -0.7
1,674,791 - AO353_07600 0.13 +1.5
1,674,791 - AO353_07600 0.13 -0.5
1,674,791 - AO353_07600 0.13 +1.5
1,674,791 - AO353_07600 0.13 -0.5
1,674,818 + AO353_07600 0.18 -0.7
1,675,148 + AO353_07600 0.84 -0.2
1,675,148 + AO353_07600 0.84 -0.1
1,675,148 + AO353_07600 0.84 +0.2
1,675,148 + AO353_07600 0.84 -0.3
1,675,148 + +0.9
1,675,149 - AO353_07600 0.84 +0.1
1,675,149 - AO353_07600 0.84 +0.5
1,675,149 - AO353_07600 0.84 -1.1
1,675,149 - AO353_07600 0.84 +0.1
1,675,149 - AO353_07600 0.84 -1.6
1,675,149 - AO353_07600 0.84 -1.4
1,675,155 - AO353_07600 0.85 +0.3
1,675,163 + AO353_07600 0.87 +1.1
1,675,163 + AO353_07600 0.87 -0.9
1,675,164 - AO353_07600 0.87 -0.5
1,675,232 + -0.1
1,675,232 + -0.1
1,675,232 + -0.7
1,675,232 + +0.9
1,675,232 + +0.9
1,675,232 + +0.3
1,675,232 + +0.9
1,675,232 + +0.7
1,675,233 - +0.1
1,675,233 - -1.0
1,675,233 - -0.1
1,675,233 - -0.4
1,675,233 - +0.2
1,675,250 + +0.1
1,675,250 + -0.4
1,675,250 + -0.0
1,675,250 + +0.9
1,675,251 - +0.0
1,675,266 + +1.3
1,675,279 + +0.9
1,675,279 + -0.5
1,675,279 + +2.5
1,675,279 + +2.5
1,675,279 + -0.7
1,675,280 - -0.3
1,675,280 - +2.5
1,675,280 - -0.2
1,675,280 - -2.0
1,675,280 - +0.8
1,675,280 - +0.9
1,675,357 + -1.2
1,675,358 - -1.4
1,675,358 - +0.5
1,675,379 + +0.8
1,675,379 + +0.3
1,675,380 - +1.5
1,675,380 - -0.0
1,675,380 - -0.0
1,675,380 - -1.1
1,675,380 - +0.3
1,675,388 + -0.8
1,675,388 + -0.1
1,675,388 + -0.3
1,675,388 + -0.7
1,675,388 + -0.6
1,675,388 + +1.7
1,675,388 + +1.0
1,675,388 + -0.7
1,675,388 + -1.5
1,675,389 - -0.2
1,675,389 - +1.7
1,675,389 - -0.1
1,675,389 - -0.7
1,675,389 - -1.2
1,675,389 - -0.1
1,675,389 - +0.5
1,675,392 + +0.1
1,675,392 + +0.4
1,675,393 - -0.1
1,675,393 - -1.8
1,675,393 - -1.3
1,675,393 - -1.4
1,675,393 - -0.3
1,675,393 - +0.9
1,675,393 - -0.3
1,675,436 + -1.0
1,675,436 + -0.5
1,675,437 - -1.2
1,675,437 - -0.4
1,675,437 - +1.5
1,675,437 - -1.9
1,675,497 - AO353_07605 0.11 -0.5
1,675,642 + AO353_07605 0.27 -0.9
1,675,642 + AO353_07605 0.27 +2.5
1,675,642 + AO353_07605 0.27 -0.8
1,675,642 + AO353_07605 0.27 -0.5
1,675,643 - AO353_07605 0.27 +0.1
1,675,643 - AO353_07605 0.27 +2.2
1,675,643 - AO353_07605 0.27 +1.1
1,675,643 - AO353_07605 0.27 -0.1
1,675,643 - AO353_07605 0.27 +2.0
1,675,807 + AO353_07605 0.45 +0.2
1,675,915 + AO353_07605 0.56 -0.0
1,675,915 + AO353_07605 0.56 +2.1
1,675,915 + AO353_07605 0.56 -0.0
1,675,915 + AO353_07605 0.56 -1.1
1,675,916 - AO353_07605 0.56 -0.1
1,675,916 - AO353_07605 0.56 +0.4
1,675,916 - AO353_07605 0.56 +0.1
1,675,916 - AO353_07605 0.56 +1.6
1,675,979 + AO353_07605 0.63 +2.2
1,675,979 + AO353_07605 0.63 -0.1
1,675,979 + AO353_07605 0.63 +1.3
1,675,979 + AO353_07605 0.63 -0.4
1,675,979 + AO353_07605 0.63 -0.9
1,675,980 - AO353_07605 0.63 -0.6
1,675,980 - AO353_07605 0.63 +0.5
1,675,980 - AO353_07605 0.63 +0.5
1,675,980 - AO353_07605 0.63 +1.5
1,676,012 + AO353_07605 0.67 -1.2
1,676,012 + AO353_07605 0.67 +2.0
1,676,012 + AO353_07605 0.67 +0.2
1,676,012 + AO353_07605 0.67 -0.9
1,676,012 + AO353_07605 0.67 +0.6
1,676,012 + AO353_07605 0.67 +1.2
1,676,013 - AO353_07605 0.67 +0.1
1,676,013 - AO353_07605 0.67 +0.9
1,676,013 - AO353_07605 0.67 -0.2
1,676,065 + AO353_07605 0.72 -1.7
1,676,246 + -0.0
1,676,246 + -0.3
1,676,246 + -0.4
1,676,246 + -1.2
1,676,246 + +1.4
1,676,247 - -1.7
1,676,247 - -0.0
1,676,247 - +0.8
1,676,247 - -0.6
1,676,247 - +0.2
1,676,313 + -0.4
1,676,314 - -0.4
1,676,320 + +0.8
1,676,321 - -0.5
1,676,579 + AO353_07610 0.53 -0.8
1,676,580 - AO353_07610 0.53 -0.4
1,677,127 + AO353_07615 0.12 +1.1
1,677,127 + AO353_07615 0.12 -0.2
1,677,127 + AO353_07615 0.12 -0.2
1,677,128 - AO353_07615 0.13 -0.2
1,677,128 - AO353_07615 0.13 -0.0
1,677,128 - AO353_07615 0.13 +1.3
1,677,128 - AO353_07615 0.13 +2.7
1,677,128 - AO353_07615 0.13 +1.4
1,677,128 - AO353_07615 0.13 +0.3

Or see this region's nucleotide sequence