Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_07315

Experiment: L-Aspartic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_07305 and AO353_07310 overlap by 4 nucleotidesAO353_07310 and AO353_07315 overlap by 4 nucleotidesAO353_07315 and AO353_07320 are separated by 118 nucleotidesAO353_07320 and AO353_07325 overlap by 1 nucleotides AO353_07305: AO353_07305 - molecular chaperone SurA, at 1,605,478 to 1,606,794 _07305 AO353_07310: AO353_07310 - 4-hydroxythreonine-4-phosphate dehydrogenase, at 1,606,791 to 1,607,780 _07310 AO353_07315: AO353_07315 - rRNA methyltransferase, at 1,607,777 to 1,608,595 _07315 AO353_07320: AO353_07320 - magnesium transporter ApaG, at 1,608,714 to 1,609,094 _07320 AO353_07325: AO353_07325 - diadenosine tetraphosphatase, at 1,609,094 to 1,609,975 _07325 Position (kb) 1607 1608 1609Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1607.777 kb on - strandat 1607.789 kb on + strandat 1608.113 kb on + strand, within AO353_07315at 1608.113 kb on + strand, within AO353_07315at 1608.113 kb on + strand, within AO353_07315at 1608.113 kb on + strand, within AO353_07315at 1608.113 kb on + strand, within AO353_07315at 1608.263 kb on + strand, within AO353_07315at 1608.617 kb on + strandat 1608.643 kb on + strandat 1608.643 kb on + strandat 1608.643 kb on + strandat 1608.643 kb on + strandat 1608.643 kb on + strandat 1608.643 kb on + strandat 1608.644 kb on - strandat 1608.644 kb on - strandat 1608.644 kb on - strandat 1608.644 kb on - strandat 1608.647 kb on - strandat 1608.662 kb on + strandat 1608.662 kb on + strandat 1608.662 kb on + strandat 1608.681 kb on + strandat 1608.682 kb on - strandat 1608.682 kb on - strandat 1608.682 kb on - strandat 1608.701 kb on + strandat 1608.701 kb on + strandat 1608.702 kb on - strandat 1608.807 kb on + strand, within AO353_07320at 1608.807 kb on + strand, within AO353_07320at 1608.807 kb on + strand, within AO353_07320at 1608.807 kb on + strand, within AO353_07320at 1608.807 kb on + strand, within AO353_07320at 1608.808 kb on - strand, within AO353_07320at 1608.808 kb on - strand, within AO353_07320at 1608.808 kb on - strand, within AO353_07320at 1608.808 kb on - strand, within AO353_07320at 1608.808 kb on - strand, within AO353_07320at 1608.808 kb on - strand, within AO353_07320at 1608.820 kb on + strand, within AO353_07320at 1608.820 kb on + strand, within AO353_07320at 1608.820 kb on + strand, within AO353_07320at 1608.820 kb on + strand, within AO353_07320at 1608.820 kb on + strand, within AO353_07320at 1608.820 kb on + strand, within AO353_07320at 1608.820 kb on + strand, within AO353_07320at 1608.820 kb on + strand, within AO353_07320at 1608.820 kb on + strand, within AO353_07320at 1608.820 kb on + strand, within AO353_07320at 1608.820 kb on + strand, within AO353_07320at 1608.821 kb on - strand, within AO353_07320at 1608.821 kb on - strand, within AO353_07320at 1608.821 kb on - strand, within AO353_07320at 1608.821 kb on - strand, within AO353_07320at 1608.821 kb on - strand, within AO353_07320at 1608.821 kb on - strand, within AO353_07320at 1608.821 kb on - strand, within AO353_07320at 1608.821 kb on - strand, within AO353_07320at 1608.821 kb on - strand, within AO353_07320at 1608.821 kb on - strand, within AO353_07320at 1608.824 kb on + strand, within AO353_07320at 1608.824 kb on + strand, within AO353_07320at 1608.824 kb on + strand, within AO353_07320at 1608.824 kb on + strand, within AO353_07320at 1608.824 kb on + strand, within AO353_07320at 1608.824 kb on + strand, within AO353_07320at 1608.824 kb on + strand, within AO353_07320at 1608.824 kb on + strand, within AO353_07320at 1608.824 kb on + strand, within AO353_07320at 1608.824 kb on + strand, within AO353_07320at 1608.824 kb on + strand, within AO353_07320at 1608.824 kb on + strand, within AO353_07320at 1608.825 kb on - strand, within AO353_07320at 1608.825 kb on - strand, within AO353_07320at 1608.825 kb on - strand, within AO353_07320at 1608.825 kb on - strand, within AO353_07320at 1608.825 kb on - strand, within AO353_07320at 1608.825 kb on - strand, within AO353_07320at 1608.825 kb on - strand, within AO353_07320at 1608.825 kb on - strand, within AO353_07320at 1608.825 kb on - strand, within AO353_07320at 1608.825 kb on - strand, within AO353_07320at 1608.825 kb on - strand, within AO353_07320at 1608.825 kb on - strand, within AO353_07320at 1608.868 kb on + strand, within AO353_07320at 1608.868 kb on + strand, within AO353_07320at 1608.868 kb on + strand, within AO353_07320at 1608.869 kb on - strand, within AO353_07320at 1608.869 kb on - strand, within AO353_07320at 1608.869 kb on - strand, within AO353_07320at 1608.869 kb on - strand, within AO353_07320at 1608.869 kb on - strand, within AO353_07320at 1608.873 kb on - strand, within AO353_07320at 1608.873 kb on - strand, within AO353_07320at 1608.960 kb on + strand, within AO353_07320at 1608.960 kb on + strand, within AO353_07320at 1608.960 kb on + strand, within AO353_07320at 1608.960 kb on + strand, within AO353_07320at 1608.960 kb on + strand, within AO353_07320at 1608.960 kb on + strand, within AO353_07320at 1608.960 kb on + strand, within AO353_07320at 1608.960 kb on + strand, within AO353_07320at 1608.960 kb on + strand, within AO353_07320at 1608.960 kb on + strand, within AO353_07320at 1608.961 kb on - strand, within AO353_07320at 1608.961 kb on - strand, within AO353_07320at 1608.961 kb on - strand, within AO353_07320at 1608.961 kb on - strand, within AO353_07320at 1608.961 kb on - strand, within AO353_07320at 1608.961 kb on - strand, within AO353_07320at 1608.961 kb on - strand, within AO353_07320at 1608.961 kb on - strand, within AO353_07320at 1608.961 kb on - strand, within AO353_07320at 1609.011 kb on + strand, within AO353_07320at 1609.011 kb on + strand, within AO353_07320at 1609.011 kb on + strand, within AO353_07320at 1609.011 kb on + strand, within AO353_07320at 1609.012 kb on - strand, within AO353_07320at 1609.012 kb on - strand, within AO353_07320at 1609.012 kb on - strand, within AO353_07320at 1609.012 kb on - strand, within AO353_07320at 1609.034 kb on + strand, within AO353_07320at 1609.251 kb on - strand, within AO353_07325at 1609.522 kb on - strand, within AO353_07325at 1609.522 kb on - strand, within AO353_07325at 1609.563 kb on - strand, within AO353_07325

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
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1,607,777 - -0.3
1,607,789 + +0.8
1,608,113 + AO353_07315 0.41 -1.3
1,608,113 + AO353_07315 0.41 +1.8
1,608,113 + AO353_07315 0.41 -0.4
1,608,113 + AO353_07315 0.41 -1.6
1,608,113 + AO353_07315 0.41 -1.2
1,608,263 + AO353_07315 0.59 -0.2
1,608,617 + -0.4
1,608,643 + -0.7
1,608,643 + +0.8
1,608,643 + +0.4
1,608,643 + -0.7
1,608,643 + +0.3
1,608,643 + -0.0
1,608,644 - -1.0
1,608,644 - +2.2
1,608,644 - +0.6
1,608,644 - -1.3
1,608,647 - +0.6
1,608,662 + -0.1
1,608,662 + -0.7
1,608,662 + -1.7
1,608,681 + -1.4
1,608,682 - -0.7
1,608,682 - -1.2
1,608,682 - -0.4
1,608,701 + -0.2
1,608,701 + +0.4
1,608,702 - -0.7
1,608,807 + AO353_07320 0.24 -0.3
1,608,807 + AO353_07320 0.24 +2.0
1,608,807 + AO353_07320 0.24 -0.0
1,608,807 + AO353_07320 0.24 +0.6
1,608,807 + AO353_07320 0.24 +0.6
1,608,808 - AO353_07320 0.25 -0.9
1,608,808 - AO353_07320 0.25 -0.2
1,608,808 - AO353_07320 0.25 +0.4
1,608,808 - AO353_07320 0.25 -0.8
1,608,808 - AO353_07320 0.25 -1.2
1,608,808 - AO353_07320 0.25 +0.6
1,608,820 + AO353_07320 0.28 -0.9
1,608,820 + AO353_07320 0.28 -1.7
1,608,820 + AO353_07320 0.28 +0.4
1,608,820 + AO353_07320 0.28 +0.7
1,608,820 + AO353_07320 0.28 +0.2
1,608,820 + AO353_07320 0.28 -0.7
1,608,820 + AO353_07320 0.28 +0.0
1,608,820 + AO353_07320 0.28 +0.4
1,608,820 + AO353_07320 0.28 -0.2
1,608,820 + AO353_07320 0.28 +0.8
1,608,820 + AO353_07320 0.28 -2.0
1,608,821 - AO353_07320 0.28 +0.7
1,608,821 - AO353_07320 0.28 -0.2
1,608,821 - AO353_07320 0.28 -2.8
1,608,821 - AO353_07320 0.28 -0.9
1,608,821 - AO353_07320 0.28 +0.5
1,608,821 - AO353_07320 0.28 -0.7
1,608,821 - AO353_07320 0.28 +0.3
1,608,821 - AO353_07320 0.28 -0.4
1,608,821 - AO353_07320 0.28 +0.0
1,608,821 - AO353_07320 0.28 -0.3
1,608,824 + AO353_07320 0.29 -1.8
1,608,824 + AO353_07320 0.29 +1.4
1,608,824 + AO353_07320 0.29 +0.1
1,608,824 + AO353_07320 0.29 -0.0
1,608,824 + AO353_07320 0.29 -1.2
1,608,824 + AO353_07320 0.29 -1.1
1,608,824 + AO353_07320 0.29 -2.0
1,608,824 + AO353_07320 0.29 -0.4
1,608,824 + AO353_07320 0.29 -0.6
1,608,824 + AO353_07320 0.29 -0.5
1,608,824 + AO353_07320 0.29 -1.7
1,608,824 + AO353_07320 0.29 -0.2
1,608,825 - AO353_07320 0.29 +0.6
1,608,825 - AO353_07320 0.29 -0.4
1,608,825 - AO353_07320 0.29 +1.4
1,608,825 - AO353_07320 0.29 -0.5
1,608,825 - AO353_07320 0.29 +0.3
1,608,825 - AO353_07320 0.29 +1.4
1,608,825 - AO353_07320 0.29 -0.5
1,608,825 - AO353_07320 0.29 -0.6
1,608,825 - AO353_07320 0.29 -0.2
1,608,825 - AO353_07320 0.29 -1.6
1,608,825 - AO353_07320 0.29 -0.0
1,608,825 - AO353_07320 0.29 -0.1
1,608,868 + AO353_07320 0.40 +0.1
1,608,868 + AO353_07320 0.40 -0.8
1,608,868 + AO353_07320 0.40 -0.8
1,608,869 - AO353_07320 0.41 -1.5
1,608,869 - AO353_07320 0.41 -1.2
1,608,869 - AO353_07320 0.41 -0.1
1,608,869 - AO353_07320 0.41 +1.1
1,608,869 - AO353_07320 0.41 -0.3
1,608,873 - AO353_07320 0.42 -0.6
1,608,873 - AO353_07320 0.42 +0.7
1,608,960 + AO353_07320 0.65 +0.7
1,608,960 + AO353_07320 0.65 -0.7
1,608,960 + AO353_07320 0.65 -0.2
1,608,960 + AO353_07320 0.65 +0.2
1,608,960 + AO353_07320 0.65 +0.1
1,608,960 + AO353_07320 0.65 -0.2
1,608,960 + AO353_07320 0.65 +0.6
1,608,960 + AO353_07320 0.65 -0.9
1,608,960 + AO353_07320 0.65 -0.3
1,608,960 + AO353_07320 0.65 -0.4
1,608,961 - AO353_07320 0.65 -0.6
1,608,961 - AO353_07320 0.65 +0.6
1,608,961 - AO353_07320 0.65 +0.4
1,608,961 - AO353_07320 0.65 +0.2
1,608,961 - AO353_07320 0.65 -2.6
1,608,961 - AO353_07320 0.65 +0.4
1,608,961 - AO353_07320 0.65 +0.8
1,608,961 - AO353_07320 0.65 -0.6
1,608,961 - AO353_07320 0.65 -1.3
1,609,011 + AO353_07320 0.78 +0.3
1,609,011 + AO353_07320 0.78 +0.1
1,609,011 + AO353_07320 0.78 +2.2
1,609,011 + AO353_07320 0.78 +0.4
1,609,012 - AO353_07320 0.78 -1.3
1,609,012 - AO353_07320 0.78 +0.4
1,609,012 - AO353_07320 0.78 +0.4
1,609,012 - AO353_07320 0.78 -0.9
1,609,034 + AO353_07320 0.84 -0.6
1,609,251 - AO353_07325 0.18 +1.4
1,609,522 - AO353_07325 0.49 -0.6
1,609,522 - AO353_07325 0.49 -0.2
1,609,563 - AO353_07325 0.53 -0.6

Or see this region's nucleotide sequence