Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_07215

Experiment: L-Aspartic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_07205 and AO353_07210 are separated by 67 nucleotidesAO353_07210 and AO353_07215 overlap by 4 nucleotidesAO353_07215 and AO353_07220 are separated by 9 nucleotides AO353_07205: AO353_07205 - lipoate--protein ligase, at 1,580,560 to 1,581,261 _07205 AO353_07210: AO353_07210 - indole-3-glycerol-phosphate synthase, at 1,581,329 to 1,582,165 _07210 AO353_07215: AO353_07215 - anthranilate phosphoribosyltransferase, at 1,582,162 to 1,583,211 _07215 AO353_07220: AO353_07220 - anthranilate synthase, at 1,583,221 to 1,583,814 _07220 Position (kb) 1582 1583 1584Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1581.249 kb on + strandat 1581.249 kb on + strandat 1581.249 kb on + strandat 1581.249 kb on + strandat 1581.250 kb on - strandat 1581.250 kb on - strandat 1581.250 kb on - strandat 1581.250 kb on - strandat 1581.288 kb on - strandat 1581.340 kb on + strandat 1581.340 kb on + strandat 1581.340 kb on + strandat 1581.340 kb on + strandat 1581.341 kb on - strandat 1581.341 kb on - strandat 1581.341 kb on - strandat 1581.341 kb on - strandat 1581.441 kb on + strand, within AO353_07210at 1581.441 kb on + strand, within AO353_07210at 1581.441 kb on + strand, within AO353_07210at 1581.441 kb on + strand, within AO353_07210at 1581.441 kb on + strand, within AO353_07210at 1581.442 kb on - strand, within AO353_07210at 1581.442 kb on - strand, within AO353_07210at 1581.500 kb on - strand, within AO353_07210at 1581.604 kb on + strand, within AO353_07210at 1581.843 kb on + strand, within AO353_07210at 1581.843 kb on + strand, within AO353_07210at 1581.843 kb on + strand, within AO353_07210at 1581.844 kb on - strand, within AO353_07210at 1581.844 kb on - strand, within AO353_07210at 1581.844 kb on - strand, within AO353_07210at 1581.844 kb on - strand, within AO353_07210at 1581.844 kb on - strand, within AO353_07210at 1581.912 kb on + strand, within AO353_07210at 1581.912 kb on + strand, within AO353_07210at 1582.145 kb on + strandat 1582.158 kb on - strandat 1582.158 kb on - strandat 1582.158 kb on - strandat 1582.298 kb on + strand, within AO353_07215at 1582.298 kb on + strand, within AO353_07215at 1582.299 kb on - strand, within AO353_07215at 1582.299 kb on - strand, within AO353_07215at 1582.299 kb on - strand, within AO353_07215at 1582.299 kb on - strand, within AO353_07215at 1582.299 kb on - strand, within AO353_07215at 1582.469 kb on + strand, within AO353_07215at 1582.470 kb on - strand, within AO353_07215at 1582.689 kb on + strand, within AO353_07215at 1582.689 kb on + strand, within AO353_07215at 1582.689 kb on + strand, within AO353_07215at 1582.689 kb on + strand, within AO353_07215at 1582.689 kb on + strand, within AO353_07215at 1582.689 kb on + strand, within AO353_07215at 1582.689 kb on + strand, within AO353_07215at 1582.690 kb on - strand, within AO353_07215at 1582.690 kb on - strand, within AO353_07215at 1582.690 kb on - strand, within AO353_07215at 1582.690 kb on - strand, within AO353_07215at 1582.690 kb on - strand, within AO353_07215at 1582.690 kb on - strand, within AO353_07215at 1582.690 kb on - strand, within AO353_07215at 1582.690 kb on - strand, within AO353_07215at 1582.690 kb on - strand, within AO353_07215at 1582.690 kb on - strand, within AO353_07215at 1582.690 kb on - strand, within AO353_07215at 1582.690 kb on - strand, within AO353_07215at 1582.817 kb on + strand, within AO353_07215at 1582.817 kb on + strand, within AO353_07215at 1582.817 kb on + strand, within AO353_07215at 1582.817 kb on + strand, within AO353_07215at 1582.818 kb on - strand, within AO353_07215at 1582.818 kb on - strand, within AO353_07215at 1582.818 kb on - strand, within AO353_07215at 1582.972 kb on + strand, within AO353_07215at 1582.972 kb on + strand, within AO353_07215at 1582.972 kb on + strand, within AO353_07215at 1582.972 kb on + strand, within AO353_07215at 1583.503 kb on - strand, within AO353_07220at 1583.508 kb on + strand, within AO353_07220at 1583.508 kb on + strand, within AO353_07220at 1583.509 kb on - strand, within AO353_07220at 1583.517 kb on + strand, within AO353_07220at 1583.536 kb on + strand, within AO353_07220at 1583.536 kb on + strand, within AO353_07220at 1583.536 kb on + strand, within AO353_07220at 1583.536 kb on + strand, within AO353_07220at 1583.536 kb on + strand, within AO353_07220at 1583.536 kb on + strand, within AO353_07220at 1583.536 kb on + strand, within AO353_07220at 1583.536 kb on + strand, within AO353_07220at 1583.536 kb on + strand, within AO353_07220at 1583.536 kb on + strand, within AO353_07220at 1583.537 kb on - strand, within AO353_07220at 1583.537 kb on - strand, within AO353_07220at 1583.537 kb on - strand, within AO353_07220at 1583.537 kb on - strand, within AO353_07220at 1583.537 kb on - strand, within AO353_07220at 1583.537 kb on - strand, within AO353_07220at 1583.537 kb on - strand, within AO353_07220at 1583.537 kb on - strand, within AO353_07220at 1583.612 kb on + strand, within AO353_07220at 1583.612 kb on + strand, within AO353_07220at 1583.612 kb on + strand, within AO353_07220at 1583.612 kb on + strand, within AO353_07220at 1583.612 kb on + strand, within AO353_07220at 1583.613 kb on - strand, within AO353_07220at 1583.749 kb on + strand, within AO353_07220at 1583.749 kb on + strand, within AO353_07220at 1583.749 kb on + strand, within AO353_07220at 1583.750 kb on - strand, within AO353_07220at 1583.750 kb on - strand, within AO353_07220at 1583.762 kb on + strandat 1583.763 kb on - strandat 1583.763 kb on - strandat 1583.763 kb on - strandat 1583.777 kb on + strandat 1583.777 kb on + strandat 1583.777 kb on + strandat 1583.777 kb on + strandat 1583.777 kb on + strandat 1583.777 kb on + strandat 1583.777 kb on + strandat 1583.777 kb on + strandat 1583.778 kb on - strandat 1583.778 kb on - strandat 1583.781 kb on + strandat 1583.781 kb on + strandat 1583.782 kb on - strandat 1583.782 kb on - strandat 1583.792 kb on + strandat 1583.792 kb on + strandat 1583.792 kb on + strandat 1583.792 kb on + strandat 1583.792 kb on + strandat 1583.792 kb on + strandat 1583.792 kb on + strandat 1583.792 kb on + strandat 1583.793 kb on - strandat 1583.793 kb on - strandat 1583.793 kb on - strandat 1583.793 kb on - strandat 1583.793 kb on - strandat 1583.793 kb on - strandat 1583.793 kb on - strandat 1583.793 kb on - strandat 1583.793 kb on - strandat 1583.797 kb on - strandat 1583.866 kb on + strandat 1583.928 kb on + strandat 1584.067 kb on + strandat 1584.067 kb on + strandat 1584.067 kb on + strandat 1584.067 kb on + strandat 1584.067 kb on + strandat 1584.067 kb on + strandat 1584.068 kb on - strandat 1584.068 kb on - strandat 1584.068 kb on - strandat 1584.068 kb on - strandat 1584.082 kb on + strandat 1584.083 kb on - strandat 1584.083 kb on - strandat 1584.087 kb on + strandat 1584.087 kb on + strandat 1584.087 kb on + strandat 1584.087 kb on + strandat 1584.087 kb on + strandat 1584.087 kb on + strandat 1584.087 kb on + strandat 1584.087 kb on + strandat 1584.087 kb on + strandat 1584.087 kb on + strandat 1584.088 kb on - strandat 1584.088 kb on - strandat 1584.088 kb on - strandat 1584.088 kb on - strandat 1584.088 kb on - strandat 1584.088 kb on - strandat 1584.088 kb on - strandat 1584.088 kb on - strandat 1584.088 kb on - strandat 1584.107 kb on + strandat 1584.108 kb on - strandat 1584.108 kb on - strandat 1584.146 kb on - strandat 1584.146 kb on - strandat 1584.146 kb on - strandat 1584.146 kb on - strandat 1584.146 kb on - strandat 1584.149 kb on + strandat 1584.149 kb on + strandat 1584.149 kb on + strandat 1584.149 kb on + strandat 1584.150 kb on - strandat 1584.150 kb on - strandat 1584.150 kb on - strandat 1584.187 kb on + strandat 1584.187 kb on + strandat 1584.188 kb on - strandat 1584.188 kb on - strandat 1584.195 kb on + strandat 1584.196 kb on - strandat 1584.196 kb on - strandat 1584.196 kb on - strandat 1584.196 kb on - strandat 1584.196 kb on - strandat 1584.196 kb on - strandat 1584.196 kb on - strandat 1584.196 kb on - strandat 1584.200 kb on + strandat 1584.200 kb on + strandat 1584.201 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
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1,581,249 + +0.3
1,581,249 + -0.4
1,581,249 + -0.1
1,581,249 + +1.1
1,581,250 - +1.4
1,581,250 - +0.3
1,581,250 - +0.8
1,581,250 - -2.0
1,581,288 - +1.4
1,581,340 + -0.2
1,581,340 + +1.8
1,581,340 + -0.6
1,581,340 + -1.0
1,581,341 - +0.8
1,581,341 - -0.3
1,581,341 - -0.1
1,581,341 - -0.6
1,581,441 + AO353_07210 0.13 +0.1
1,581,441 + AO353_07210 0.13 -1.8
1,581,441 + AO353_07210 0.13 -0.6
1,581,441 + AO353_07210 0.13 -2.9
1,581,441 + AO353_07210 0.13 -0.6
1,581,442 - AO353_07210 0.14 -0.2
1,581,442 - AO353_07210 0.14 -0.6
1,581,500 - AO353_07210 0.20 +0.1
1,581,604 + AO353_07210 0.33 -1.4
1,581,843 + AO353_07210 0.61 -0.7
1,581,843 + AO353_07210 0.61 -2.1
1,581,843 + AO353_07210 0.61 -1.4
1,581,844 - AO353_07210 0.62 -1.7
1,581,844 - AO353_07210 0.62 -2.2
1,581,844 - AO353_07210 0.62 -0.8
1,581,844 - AO353_07210 0.62 -0.2
1,581,844 - AO353_07210 0.62 -1.7
1,581,912 + AO353_07210 0.70 -1.7
1,581,912 + AO353_07210 0.70 -0.7
1,582,145 + -1.0
1,582,158 - -1.4
1,582,158 - +2.4
1,582,158 - -1.1
1,582,298 + AO353_07215 0.13 +1.4
1,582,298 + AO353_07215 0.13 -0.7
1,582,299 - AO353_07215 0.13 +0.8
1,582,299 - AO353_07215 0.13 +0.4
1,582,299 - AO353_07215 0.13 -0.2
1,582,299 - AO353_07215 0.13 +0.1
1,582,299 - AO353_07215 0.13 +0.1
1,582,469 + AO353_07215 0.29 -2.4
1,582,470 - AO353_07215 0.29 -0.9
1,582,689 + AO353_07215 0.50 -1.7
1,582,689 + AO353_07215 0.50 -2.7
1,582,689 + AO353_07215 0.50 -2.3
1,582,689 + AO353_07215 0.50 -2.2
1,582,689 + AO353_07215 0.50 -1.0
1,582,689 + AO353_07215 0.50 -1.7
1,582,689 + AO353_07215 0.50 -2.3
1,582,690 - AO353_07215 0.50 -2.2
1,582,690 - AO353_07215 0.50 -1.0
1,582,690 - AO353_07215 0.50 -0.0
1,582,690 - AO353_07215 0.50 -1.0
1,582,690 - AO353_07215 0.50 -1.0
1,582,690 - AO353_07215 0.50 -0.6
1,582,690 - AO353_07215 0.50 +0.4
1,582,690 - AO353_07215 0.50 -1.4
1,582,690 - AO353_07215 0.50 -2.2
1,582,690 - AO353_07215 0.50 -1.3
1,582,690 - AO353_07215 0.50 -1.7
1,582,690 - AO353_07215 0.50 -0.2
1,582,817 + AO353_07215 0.62 -2.4
1,582,817 + AO353_07215 0.62 -0.6
1,582,817 + AO353_07215 0.62 -1.6
1,582,817 + AO353_07215 0.62 +0.1
1,582,818 - AO353_07215 0.62 +1.4
1,582,818 - AO353_07215 0.62 -1.0
1,582,818 - AO353_07215 0.62 +1.4
1,582,972 + AO353_07215 0.77 -1.4
1,582,972 + AO353_07215 0.77 +0.8
1,582,972 + AO353_07215 0.77 -0.7
1,582,972 + AO353_07215 0.77 +0.1
1,583,503 - AO353_07220 0.47 -1.5
1,583,508 + AO353_07220 0.48 +0.3
1,583,508 + AO353_07220 0.48 -3.6
1,583,509 - AO353_07220 0.48 -2.0
1,583,517 + AO353_07220 0.50 -2.5
1,583,536 + AO353_07220 0.53 -1.3
1,583,536 + AO353_07220 0.53 -1.7
1,583,536 + AO353_07220 0.53 -0.4
1,583,536 + AO353_07220 0.53 +0.6
1,583,536 + AO353_07220 0.53 -1.3
1,583,536 + AO353_07220 0.53 -2.0
1,583,536 + AO353_07220 0.53 -0.9
1,583,536 + AO353_07220 0.53 -2.6
1,583,536 + AO353_07220 0.53 -0.7
1,583,536 + AO353_07220 0.53 -1.0
1,583,537 - AO353_07220 0.53 -0.8
1,583,537 - AO353_07220 0.53 +0.4
1,583,537 - AO353_07220 0.53 +0.8
1,583,537 - AO353_07220 0.53 +0.1
1,583,537 - AO353_07220 0.53 -0.8
1,583,537 - AO353_07220 0.53 -0.4
1,583,537 - AO353_07220 0.53 -1.0
1,583,537 - AO353_07220 0.53 -1.0
1,583,612 + AO353_07220 0.66 -0.4
1,583,612 + AO353_07220 0.66 -1.6
1,583,612 + AO353_07220 0.66 -1.4
1,583,612 + AO353_07220 0.66 -1.0
1,583,612 + AO353_07220 0.66 -0.2
1,583,613 - AO353_07220 0.66 -2.6
1,583,749 + AO353_07220 0.89 -1.2
1,583,749 + AO353_07220 0.89 -2.1
1,583,749 + AO353_07220 0.89 -1.5
1,583,750 - AO353_07220 0.89 -0.2
1,583,750 - AO353_07220 0.89 -2.3
1,583,762 + -2.4
1,583,763 - +0.4
1,583,763 - -1.6
1,583,763 - -2.3
1,583,777 + -1.0
1,583,777 + -0.4
1,583,777 + -1.4
1,583,777 + -0.6
1,583,777 + -0.6
1,583,777 + -0.2
1,583,777 + -1.0
1,583,777 + -2.6
1,583,778 - -0.2
1,583,778 - -1.4
1,583,781 + -1.8
1,583,781 + -1.3
1,583,782 - -1.7
1,583,782 - -1.6
1,583,792 + -0.5
1,583,792 + -0.7
1,583,792 + -1.4
1,583,792 + -0.4
1,583,792 + -1.7
1,583,792 + -0.7
1,583,792 + -3.1
1,583,792 + -1.9
1,583,793 - -1.9
1,583,793 - -1.5
1,583,793 - -1.0
1,583,793 - -2.8
1,583,793 - -1.0
1,583,793 - -0.4
1,583,793 - -0.7
1,583,793 - -1.9
1,583,793 - -3.4
1,583,797 - -0.4
1,583,866 + +1.1
1,583,928 + -1.5
1,584,067 + -1.1
1,584,067 + -1.7
1,584,067 + -1.6
1,584,067 + -1.2
1,584,067 + -0.4
1,584,067 + -0.6
1,584,068 - +0.4
1,584,068 - +1.7
1,584,068 - +1.3
1,584,068 - -0.3
1,584,082 + -2.1
1,584,083 - -0.4
1,584,083 - +0.4
1,584,087 + +0.6
1,584,087 + -2.9
1,584,087 + -1.5
1,584,087 + -1.9
1,584,087 + -3.3
1,584,087 + -1.0
1,584,087 + -0.6
1,584,087 + -0.1
1,584,087 + -1.7
1,584,087 + -3.0
1,584,088 - -1.4
1,584,088 - +1.0
1,584,088 - +0.2
1,584,088 - -0.7
1,584,088 - +0.3
1,584,088 - -3.1
1,584,088 - -1.6
1,584,088 - +0.1
1,584,088 - -0.4
1,584,107 + +1.4
1,584,108 - +0.1
1,584,108 - +0.1
1,584,146 - -0.2
1,584,146 - -2.1
1,584,146 - -0.2
1,584,146 - -0.7
1,584,146 - -0.4
1,584,149 + -0.6
1,584,149 + +0.5
1,584,149 + -0.0
1,584,149 + -0.4
1,584,150 - +0.3
1,584,150 - +2.4
1,584,150 - -0.6
1,584,187 + -1.1
1,584,187 + +0.8
1,584,188 - +0.5
1,584,188 - +1.4
1,584,195 + -1.4
1,584,196 - -1.4
1,584,196 - +0.8
1,584,196 - -1.4
1,584,196 - +0.4
1,584,196 - +0.5
1,584,196 - -0.6
1,584,196 - -1.8
1,584,196 - +0.7
1,584,200 + +0.5
1,584,200 + +0.1
1,584,201 - +1.4

Or see this region's nucleotide sequence