Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_06725

Experiment: L-Aspartic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_06715 and AO353_06720 overlap by 4 nucleotidesAO353_06720 and AO353_06725 are separated by 128 nucleotidesAO353_06725 and AO353_06730 overlap by 4 nucleotidesAO353_06730 and AO353_06735 are separated by 246 nucleotides AO353_06715: AO353_06715 - diaminohydroxyphosphoribosylaminopyrimidine deaminase, at 1,494,652 to 1,495,785 _06715 AO353_06720: AO353_06720 - NrdR family transcriptional regulator, at 1,495,782 to 1,496,246 _06720 AO353_06725: AO353_06725 - hypothetical protein, at 1,496,375 to 1,496,836 _06725 AO353_06730: AO353_06730 - methyltransferase, at 1,496,833 to 1,497,489 _06730 AO353_06735: AO353_06735 - thioredoxin, at 1,497,736 to 1,498,608 _06735 Position (kb) 1496 1497Strain fitness (log2 ratio) -2 -1 0 1 2at 1495.746 kb on - strandat 1495.746 kb on - strandat 1495.746 kb on - strandat 1495.746 kb on - strandat 1495.746 kb on - strandat 1495.778 kb on - strandat 1495.778 kb on - strandat 1495.856 kb on - strand, within AO353_06720at 1495.876 kb on + strand, within AO353_06720at 1495.877 kb on - strand, within AO353_06720at 1495.877 kb on - strand, within AO353_06720at 1495.877 kb on - strand, within AO353_06720at 1496.308 kb on + strandat 1496.309 kb on - strandat 1496.322 kb on + strandat 1496.322 kb on + strandat 1496.322 kb on + strandat 1496.322 kb on + strandat 1496.322 kb on + strandat 1496.323 kb on - strandat 1496.323 kb on - strandat 1496.323 kb on - strandat 1496.323 kb on - strandat 1496.323 kb on - strandat 1496.323 kb on - strandat 1496.323 kb on - strandat 1496.323 kb on - strandat 1496.323 kb on - strandat 1496.323 kb on - strandat 1496.333 kb on + strandat 1496.333 kb on + strandat 1496.334 kb on - strandat 1496.334 kb on - strandat 1496.334 kb on - strandat 1496.397 kb on + strandat 1496.397 kb on + strandat 1496.397 kb on + strandat 1496.398 kb on - strandat 1496.398 kb on - strandat 1496.398 kb on - strandat 1496.398 kb on - strandat 1496.398 kb on - strandat 1496.428 kb on + strand, within AO353_06725at 1496.428 kb on + strand, within AO353_06725at 1496.428 kb on + strand, within AO353_06725at 1496.429 kb on - strand, within AO353_06725at 1496.528 kb on + strand, within AO353_06725at 1496.864 kb on + strandat 1496.865 kb on - strandat 1497.004 kb on + strand, within AO353_06730at 1497.004 kb on + strand, within AO353_06730at 1497.005 kb on - strand, within AO353_06730at 1497.005 kb on - strand, within AO353_06730at 1497.005 kb on - strand, within AO353_06730at 1497.230 kb on - strand, within AO353_06730at 1497.230 kb on - strand, within AO353_06730at 1497.230 kb on - strand, within AO353_06730at 1497.230 kb on - strand, within AO353_06730at 1497.292 kb on + strand, within AO353_06730at 1497.292 kb on + strand, within AO353_06730at 1497.292 kb on + strand, within AO353_06730at 1497.292 kb on + strand, within AO353_06730at 1497.292 kb on + strand, within AO353_06730at 1497.292 kb on + strand, within AO353_06730at 1497.293 kb on - strand, within AO353_06730at 1497.293 kb on - strand, within AO353_06730at 1497.391 kb on + strand, within AO353_06730at 1497.391 kb on + strand, within AO353_06730at 1497.391 kb on + strand, within AO353_06730at 1497.391 kb on + strand, within AO353_06730at 1497.392 kb on - strand, within AO353_06730at 1497.392 kb on - strand, within AO353_06730at 1497.469 kb on + strandat 1497.470 kb on - strandat 1497.483 kb on + strandat 1497.483 kb on + strandat 1497.483 kb on + strandat 1497.483 kb on + strandat 1497.483 kb on + strandat 1497.483 kb on + strandat 1497.483 kb on + strandat 1497.483 kb on + strandat 1497.483 kb on + strandat 1497.483 kb on + strandat 1497.483 kb on + strandat 1497.484 kb on - strandat 1497.484 kb on - strandat 1497.484 kb on - strandat 1497.484 kb on - strandat 1497.484 kb on - strandat 1497.484 kb on - strandat 1497.484 kb on - strandat 1497.484 kb on - strandat 1497.598 kb on - strandat 1497.598 kb on - strandat 1497.670 kb on + strandat 1497.670 kb on + strandat 1497.670 kb on + strandat 1497.670 kb on + strandat 1497.670 kb on + strandat 1497.670 kb on + strandat 1497.670 kb on + strandat 1497.670 kb on + strandat 1497.670 kb on + strandat 1497.671 kb on - strandat 1497.671 kb on - strandat 1497.671 kb on - strandat 1497.671 kb on - strandat 1497.671 kb on - strandat 1497.671 kb on - strandat 1497.671 kb on - strandat 1497.674 kb on + strandat 1497.674 kb on + strandat 1497.674 kb on + strandat 1497.674 kb on + strandat 1497.674 kb on + strandat 1497.674 kb on + strandat 1497.674 kb on + strandat 1497.674 kb on + strandat 1497.674 kb on + strandat 1497.674 kb on + strandat 1497.674 kb on + strandat 1497.674 kb on + strandat 1497.674 kb on + strandat 1497.674 kb on + strandat 1497.674 kb on + strandat 1497.674 kb on + strandat 1497.674 kb on + strandat 1497.675 kb on - strandat 1497.675 kb on - strandat 1497.675 kb on - strandat 1497.675 kb on - strandat 1497.675 kb on - strandat 1497.675 kb on - strandat 1497.675 kb on - strandat 1497.675 kb on - strandat 1497.675 kb on - strandat 1497.675 kb on - strandat 1497.675 kb on - strandat 1497.675 kb on - strandat 1497.675 kb on - strandat 1497.675 kb on - strandat 1497.675 kb on - strandat 1497.675 kb on - strandat 1497.675 kb on - strandat 1497.675 kb on - strandat 1497.678 kb on + strandat 1497.678 kb on + strandat 1497.678 kb on + strandat 1497.678 kb on + strandat 1497.678 kb on + strandat 1497.678 kb on + strandat 1497.678 kb on + strandat 1497.678 kb on + strandat 1497.678 kb on + strandat 1497.678 kb on + strandat 1497.678 kb on + strandat 1497.678 kb on + strandat 1497.678 kb on + strandat 1497.678 kb on + strandat 1497.678 kb on + strandat 1497.678 kb on + strandat 1497.678 kb on + strandat 1497.678 kb on + strandat 1497.678 kb on + strandat 1497.679 kb on - strandat 1497.679 kb on - strandat 1497.679 kb on - strandat 1497.679 kb on - strandat 1497.679 kb on - strandat 1497.679 kb on - strandat 1497.679 kb on - strandat 1497.679 kb on - strandat 1497.679 kb on - strandat 1497.679 kb on - strandat 1497.679 kb on - strandat 1497.679 kb on - strandat 1497.679 kb on - strandat 1497.679 kb on - strandat 1497.679 kb on - strandat 1497.679 kb on - strandat 1497.679 kb on - strandat 1497.679 kb on - strandat 1497.700 kb on + strandat 1497.700 kb on + strandat 1497.700 kb on + strandat 1497.700 kb on + strandat 1497.700 kb on + strandat 1497.700 kb on + strandat 1497.700 kb on + strandat 1497.700 kb on + strandat 1497.701 kb on - strandat 1497.702 kb on + strandat 1497.702 kb on + strandat 1497.702 kb on + strandat 1497.702 kb on + strandat 1497.702 kb on + strandat 1497.702 kb on + strandat 1497.702 kb on + strandat 1497.702 kb on + strandat 1497.702 kb on + strandat 1497.702 kb on + strandat 1497.702 kb on + strandat 1497.702 kb on + strandat 1497.702 kb on + strandat 1497.702 kb on + strandat 1497.702 kb on + strandat 1497.702 kb on + strandat 1497.702 kb on + strandat 1497.702 kb on + strandat 1497.702 kb on + strandat 1497.703 kb on - strandat 1497.703 kb on - strandat 1497.703 kb on - strandat 1497.703 kb on - strandat 1497.703 kb on - strandat 1497.703 kb on - strandat 1497.703 kb on - strandat 1497.703 kb on - strandat 1497.703 kb on - strandat 1497.703 kb on - strandat 1497.703 kb on - strandat 1497.703 kb on - strandat 1497.703 kb on - strandat 1497.703 kb on - strandat 1497.703 kb on - strandat 1497.703 kb on - strandat 1497.754 kb on + strandat 1497.754 kb on + strandat 1497.754 kb on + strandat 1497.754 kb on + strandat 1497.755 kb on - strandat 1497.755 kb on - strandat 1497.755 kb on - strandat 1497.756 kb on + strandat 1497.756 kb on + strandat 1497.756 kb on + strandat 1497.756 kb on + strandat 1497.756 kb on + strandat 1497.756 kb on + strandat 1497.756 kb on + strandat 1497.756 kb on + strandat 1497.757 kb on - strandat 1497.757 kb on - strandat 1497.757 kb on - strandat 1497.757 kb on - strandat 1497.771 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
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1,495,746 - -2.6
1,495,746 - +0.8
1,495,746 - -0.3
1,495,746 - -0.0
1,495,746 - -0.6
1,495,778 - +1.4
1,495,778 - +0.6
1,495,856 - AO353_06720 0.16 +0.1
1,495,876 + AO353_06720 0.20 +0.1
1,495,877 - AO353_06720 0.20 -0.6
1,495,877 - AO353_06720 0.20 +1.4
1,495,877 - AO353_06720 0.20 +0.2
1,496,308 + -0.5
1,496,309 - -0.1
1,496,322 + -0.6
1,496,322 + -1.1
1,496,322 + +2.1
1,496,322 + -0.8
1,496,322 + +0.4
1,496,323 - +0.4
1,496,323 - -0.3
1,496,323 - -0.6
1,496,323 - +1.4
1,496,323 - +2.4
1,496,323 - -0.7
1,496,323 - +0.6
1,496,323 - -0.8
1,496,323 - -1.7
1,496,323 - +0.2
1,496,333 + +0.2
1,496,333 + +0.8
1,496,334 - -0.6
1,496,334 - -2.1
1,496,334 - -2.2
1,496,397 + -0.2
1,496,397 + -0.6
1,496,397 + -1.2
1,496,398 - -0.2
1,496,398 - +1.6
1,496,398 - +1.0
1,496,398 - -1.3
1,496,398 - +1.1
1,496,428 + AO353_06725 0.11 -0.3
1,496,428 + AO353_06725 0.11 +1.2
1,496,428 + AO353_06725 0.11 -0.1
1,496,429 - AO353_06725 0.12 +0.4
1,496,528 + AO353_06725 0.33 +1.8
1,496,864 + +0.8
1,496,865 - +1.7
1,497,004 + AO353_06730 0.26 +0.1
1,497,004 + AO353_06730 0.26 +0.1
1,497,005 - AO353_06730 0.26 -0.6
1,497,005 - AO353_06730 0.26 -0.4
1,497,005 - AO353_06730 0.26 -2.2
1,497,230 - AO353_06730 0.60 +0.2
1,497,230 - AO353_06730 0.60 +1.1
1,497,230 - AO353_06730 0.60 -0.3
1,497,230 - AO353_06730 0.60 +1.4
1,497,292 + AO353_06730 0.70 +0.3
1,497,292 + AO353_06730 0.70 -1.6
1,497,292 + AO353_06730 0.70 +1.6
1,497,292 + AO353_06730 0.70 +0.4
1,497,292 + AO353_06730 0.70 +0.6
1,497,292 + AO353_06730 0.70 +0.4
1,497,293 - AO353_06730 0.70 +0.2
1,497,293 - AO353_06730 0.70 +0.8
1,497,391 + AO353_06730 0.85 -1.1
1,497,391 + AO353_06730 0.85 -0.3
1,497,391 + AO353_06730 0.85 +1.7
1,497,391 + AO353_06730 0.85 -0.8
1,497,392 - AO353_06730 0.85 -0.2
1,497,392 - AO353_06730 0.85 +0.4
1,497,469 + +0.5
1,497,470 - +0.8
1,497,483 + +0.1
1,497,483 + +0.1
1,497,483 + -1.0
1,497,483 + +0.7
1,497,483 + -0.4
1,497,483 + -0.0
1,497,483 + +1.1
1,497,483 + +1.2
1,497,483 + +0.4
1,497,483 + -0.6
1,497,483 + -1.1
1,497,484 - -0.2
1,497,484 - +0.1
1,497,484 - +0.1
1,497,484 - -1.0
1,497,484 - -0.6
1,497,484 - -0.2
1,497,484 - -1.2
1,497,484 - -2.5
1,497,598 - +1.9
1,497,598 - +0.8
1,497,670 + +1.1
1,497,670 + -0.3
1,497,670 + -0.4
1,497,670 + +0.8
1,497,670 + -0.8
1,497,670 + -1.3
1,497,670 + -1.1
1,497,670 + +1.4
1,497,670 + -2.5
1,497,671 - -0.2
1,497,671 - -0.2
1,497,671 - +2.4
1,497,671 - -0.7
1,497,671 - -0.0
1,497,671 - +0.1
1,497,671 - +0.0
1,497,674 + -0.5
1,497,674 + -0.8
1,497,674 + -1.2
1,497,674 + -0.2
1,497,674 + +0.5
1,497,674 + +0.6
1,497,674 + +2.6
1,497,674 + +0.1
1,497,674 + +0.6
1,497,674 + +1.4
1,497,674 + -0.4
1,497,674 + -1.0
1,497,674 + -0.6
1,497,674 + -1.2
1,497,674 + +0.7
1,497,674 + +0.5
1,497,674 + -1.4
1,497,675 - -0.2
1,497,675 - -0.5
1,497,675 - -0.5
1,497,675 - +0.0
1,497,675 - -0.6
1,497,675 - +0.6
1,497,675 - -0.9
1,497,675 - -0.3
1,497,675 - -2.3
1,497,675 - -0.3
1,497,675 - -0.8
1,497,675 - -1.2
1,497,675 - +0.6
1,497,675 - +0.8
1,497,675 - +2.1
1,497,675 - +1.2
1,497,675 - -0.4
1,497,675 - -1.3
1,497,678 + +0.8
1,497,678 + +2.0
1,497,678 + -0.6
1,497,678 + +0.2
1,497,678 + +0.4
1,497,678 + +0.8
1,497,678 + -0.2
1,497,678 + -0.6
1,497,678 + +0.1
1,497,678 + +0.4
1,497,678 + +0.8
1,497,678 + +0.2
1,497,678 + +2.4
1,497,678 + +0.5
1,497,678 + -0.4
1,497,678 + +0.2
1,497,678 + +0.4
1,497,678 + +0.2
1,497,678 + +0.5
1,497,679 - +0.1
1,497,679 - -0.9
1,497,679 - +0.4
1,497,679 - -0.5
1,497,679 - +0.8
1,497,679 - -0.1
1,497,679 - +1.8
1,497,679 - +0.6
1,497,679 - -0.9
1,497,679 - -0.0
1,497,679 - +1.1
1,497,679 - +0.6
1,497,679 - +0.1
1,497,679 - -0.4
1,497,679 - +0.4
1,497,679 - -0.7
1,497,679 - +0.8
1,497,679 - -0.3
1,497,700 + -1.1
1,497,700 + -0.5
1,497,700 + -2.6
1,497,700 + -1.7
1,497,700 + -0.8
1,497,700 + -0.5
1,497,700 + -0.6
1,497,700 + -0.1
1,497,701 - -1.4
1,497,702 + +0.7
1,497,702 + +0.4
1,497,702 + -0.3
1,497,702 + +0.4
1,497,702 + -0.5
1,497,702 + -0.6
1,497,702 + +0.5
1,497,702 + -0.6
1,497,702 + -0.6
1,497,702 + -0.7
1,497,702 + +0.4
1,497,702 + -1.1
1,497,702 + +0.2
1,497,702 + -0.7
1,497,702 + -1.3
1,497,702 + +0.4
1,497,702 + +0.8
1,497,702 + +0.4
1,497,702 + -1.1
1,497,703 - -0.4
1,497,703 - +0.3
1,497,703 - +1.4
1,497,703 - -0.7
1,497,703 - -0.3
1,497,703 - -0.3
1,497,703 - -0.8
1,497,703 - -0.5
1,497,703 - +1.4
1,497,703 - -0.2
1,497,703 - -0.0
1,497,703 - -0.2
1,497,703 - -1.9
1,497,703 - +0.7
1,497,703 - +2.4
1,497,703 - -0.4
1,497,754 + -0.4
1,497,754 + -0.9
1,497,754 + -0.6
1,497,754 + +0.6
1,497,755 - +1.0
1,497,755 - -0.7
1,497,755 - +0.1
1,497,756 + -0.3
1,497,756 + -0.1
1,497,756 + +0.4
1,497,756 + -0.3
1,497,756 + +0.4
1,497,756 + -0.9
1,497,756 + +0.3
1,497,756 + -1.2
1,497,757 - +0.8
1,497,757 - +0.9
1,497,757 - -0.5
1,497,757 - -1.6
1,497,771 + -0.2

Or see this region's nucleotide sequence