Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_06550

Experiment: L-Aspartic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_06540 and AO353_06545 overlap by 8 nucleotidesAO353_06545 and AO353_06550 overlap by 4 nucleotidesAO353_06550 and AO353_06555 are separated by 205 nucleotides AO353_06540: AO353_06540 - hypothetical protein, at 1,455,000 to 1,455,284 _06540 AO353_06545: AO353_06545 - aromatic acid decarboxylase, at 1,455,277 to 1,455,909 _06545 AO353_06550: AO353_06550 - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase, at 1,455,906 to 1,457,255 _06550 AO353_06555: AO353_06555 - Fis family transcriptional regulator, at 1,457,461 to 1,459,377 _06555 Position (kb) 1455 1456 1457 1458Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1455.001 kb on + strandat 1455.001 kb on + strandat 1455.001 kb on + strandat 1455.001 kb on + strandat 1455.002 kb on - strandat 1455.002 kb on - strandat 1455.002 kb on - strandat 1455.002 kb on - strandat 1455.002 kb on - strandat 1455.002 kb on - strandat 1455.002 kb on - strandat 1455.002 kb on - strandat 1455.163 kb on + strand, within AO353_06540at 1455.187 kb on + strand, within AO353_06540at 1455.188 kb on - strand, within AO353_06540at 1455.188 kb on - strand, within AO353_06540at 1455.188 kb on - strand, within AO353_06540at 1455.273 kb on + strandat 1455.273 kb on + strandat 1455.273 kb on + strandat 1455.273 kb on + strandat 1455.273 kb on + strandat 1455.273 kb on + strandat 1455.273 kb on + strandat 1455.273 kb on + strandat 1455.273 kb on + strandat 1455.273 kb on + strandat 1455.273 kb on + strandat 1455.274 kb on - strandat 1455.274 kb on - strandat 1455.274 kb on - strandat 1455.274 kb on - strandat 1455.278 kb on + strandat 1455.278 kb on + strandat 1455.278 kb on + strandat 1455.278 kb on + strandat 1455.278 kb on + strandat 1455.278 kb on + strandat 1455.278 kb on + strandat 1455.278 kb on + strandat 1455.278 kb on + strandat 1455.278 kb on + strandat 1455.279 kb on - strandat 1455.279 kb on - strandat 1455.279 kb on - strandat 1455.279 kb on - strandat 1455.987 kb on - strandat 1456.011 kb on - strandat 1456.100 kb on - strand, within AO353_06550at 1456.100 kb on - strand, within AO353_06550at 1456.100 kb on - strand, within AO353_06550at 1456.277 kb on - strand, within AO353_06550at 1456.277 kb on - strand, within AO353_06550at 1456.277 kb on - strand, within AO353_06550at 1456.277 kb on - strand, within AO353_06550at 1456.277 kb on - strand, within AO353_06550at 1456.359 kb on - strand, within AO353_06550at 1456.375 kb on - strand, within AO353_06550at 1456.375 kb on - strand, within AO353_06550at 1456.375 kb on - strand, within AO353_06550at 1456.375 kb on - strand, within AO353_06550at 1456.375 kb on - strand, within AO353_06550at 1456.375 kb on - strand, within AO353_06550at 1456.375 kb on - strand, within AO353_06550at 1456.375 kb on - strand, within AO353_06550at 1456.375 kb on - strand, within AO353_06550at 1456.375 kb on - strand, within AO353_06550at 1456.375 kb on - strand, within AO353_06550at 1456.375 kb on - strand, within AO353_06550at 1456.730 kb on - strand, within AO353_06550at 1456.772 kb on - strand, within AO353_06550at 1456.772 kb on - strand, within AO353_06550at 1456.772 kb on - strand, within AO353_06550at 1456.994 kb on - strand, within AO353_06550at 1456.994 kb on - strand, within AO353_06550at 1456.994 kb on - strand, within AO353_06550at 1456.994 kb on - strand, within AO353_06550at 1456.994 kb on - strand, within AO353_06550at 1457.013 kb on + strand, within AO353_06550at 1457.014 kb on - strand, within AO353_06550at 1457.014 kb on - strand, within AO353_06550at 1457.014 kb on - strand, within AO353_06550at 1457.014 kb on - strand, within AO353_06550at 1457.014 kb on - strand, within AO353_06550at 1457.014 kb on - strand, within AO353_06550at 1457.014 kb on - strand, within AO353_06550at 1457.014 kb on - strand, within AO353_06550at 1457.014 kb on - strand, within AO353_06550at 1457.018 kb on - strand, within AO353_06550at 1457.018 kb on - strand, within AO353_06550at 1457.018 kb on - strand, within AO353_06550at 1457.018 kb on - strand, within AO353_06550at 1457.099 kb on - strand, within AO353_06550at 1457.099 kb on - strand, within AO353_06550at 1457.099 kb on - strand, within AO353_06550at 1457.099 kb on - strand, within AO353_06550at 1457.099 kb on - strand, within AO353_06550at 1457.235 kb on - strandat 1457.235 kb on - strandat 1457.244 kb on - strandat 1457.244 kb on - strandat 1457.244 kb on - strandat 1457.244 kb on - strandat 1457.256 kb on - strandat 1457.256 kb on - strandat 1457.256 kb on - strandat 1457.256 kb on - strandat 1457.256 kb on - strandat 1457.267 kb on + strandat 1457.268 kb on - strandat 1457.268 kb on - strandat 1457.291 kb on - strandat 1457.291 kb on - strandat 1457.291 kb on - strandat 1457.314 kb on + strandat 1457.314 kb on + strandat 1457.369 kb on - strandat 1457.369 kb on - strandat 1457.470 kb on + strandat 1457.493 kb on + strandat 1457.493 kb on + strandat 1457.493 kb on + strandat 1457.494 kb on - strandat 1457.494 kb on - strandat 1457.494 kb on - strandat 1457.494 kb on - strandat 1457.494 kb on - strandat 1457.494 kb on - strandat 1457.494 kb on - strandat 1457.495 kb on + strandat 1457.495 kb on + strandat 1457.496 kb on - strandat 1457.533 kb on - strandat 1457.603 kb on + strandat 1457.658 kb on + strand, within AO353_06555at 1457.759 kb on + strand, within AO353_06555at 1457.760 kb on - strand, within AO353_06555at 1457.760 kb on - strand, within AO353_06555at 1457.760 kb on - strand, within AO353_06555at 1457.906 kb on + strand, within AO353_06555at 1457.906 kb on + strand, within AO353_06555at 1457.906 kb on + strand, within AO353_06555at 1457.907 kb on - strand, within AO353_06555at 1457.907 kb on - strand, within AO353_06555at 1457.907 kb on - strand, within AO353_06555at 1457.907 kb on - strand, within AO353_06555at 1457.907 kb on - strand, within AO353_06555at 1457.907 kb on - strand, within AO353_06555at 1457.907 kb on - strand, within AO353_06555at 1458.037 kb on + strand, within AO353_06555at 1458.037 kb on + strand, within AO353_06555at 1458.037 kb on + strand, within AO353_06555at 1458.037 kb on + strand, within AO353_06555at 1458.037 kb on + strand, within AO353_06555at 1458.037 kb on + strand, within AO353_06555at 1458.037 kb on + strand, within AO353_06555at 1458.038 kb on - strand, within AO353_06555at 1458.038 kb on - strand, within AO353_06555at 1458.040 kb on + strand, within AO353_06555at 1458.040 kb on + strand, within AO353_06555at 1458.041 kb on - strand, within AO353_06555at 1458.041 kb on - strand, within AO353_06555at 1458.041 kb on - strand, within AO353_06555at 1458.041 kb on - strand, within AO353_06555at 1458.041 kb on - strand, within AO353_06555

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
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1,455,001 + -0.5
1,455,001 + +0.8
1,455,001 + -0.3
1,455,001 + -1.0
1,455,002 - -1.6
1,455,002 - +0.1
1,455,002 - -2.0
1,455,002 - +1.5
1,455,002 - +1.8
1,455,002 - -1.0
1,455,002 - -0.1
1,455,002 - +0.8
1,455,163 + AO353_06540 0.57 -1.0
1,455,187 + AO353_06540 0.66 +0.9
1,455,188 - AO353_06540 0.66 +0.8
1,455,188 - AO353_06540 0.66 +2.4
1,455,188 - AO353_06540 0.66 -0.5
1,455,273 + +0.8
1,455,273 + -1.1
1,455,273 + +0.9
1,455,273 + +1.4
1,455,273 + -1.1
1,455,273 + +0.2
1,455,273 + -0.4
1,455,273 + -1.3
1,455,273 + +0.5
1,455,273 + -0.3
1,455,273 + +0.3
1,455,274 - +0.5
1,455,274 - -0.1
1,455,274 - -0.8
1,455,274 - +0.8
1,455,278 + +1.4
1,455,278 + +2.0
1,455,278 + +0.4
1,455,278 + -1.0
1,455,278 + +0.2
1,455,278 + -0.4
1,455,278 + +0.8
1,455,278 + -0.4
1,455,278 + +0.4
1,455,278 + +0.4
1,455,279 - +0.4
1,455,279 - -0.1
1,455,279 - +2.9
1,455,279 - -0.3
1,455,987 - -0.8
1,456,011 - -1.5
1,456,100 - AO353_06550 0.14 +0.8
1,456,100 - AO353_06550 0.14 -1.8
1,456,100 - AO353_06550 0.14 -1.6
1,456,277 - AO353_06550 0.27 -1.2
1,456,277 - AO353_06550 0.27 +0.5
1,456,277 - AO353_06550 0.27 -0.5
1,456,277 - AO353_06550 0.27 -2.0
1,456,277 - AO353_06550 0.27 -1.2
1,456,359 - AO353_06550 0.34 +0.0
1,456,375 - AO353_06550 0.35 +1.0
1,456,375 - AO353_06550 0.35 -1.9
1,456,375 - AO353_06550 0.35 +1.9
1,456,375 - AO353_06550 0.35 +0.4
1,456,375 - AO353_06550 0.35 -1.6
1,456,375 - AO353_06550 0.35 -1.0
1,456,375 - AO353_06550 0.35 +0.9
1,456,375 - AO353_06550 0.35 +1.4
1,456,375 - AO353_06550 0.35 +0.2
1,456,375 - AO353_06550 0.35 -0.2
1,456,375 - AO353_06550 0.35 -2.0
1,456,375 - AO353_06550 0.35 +0.4
1,456,730 - AO353_06550 0.61 -0.6
1,456,772 - AO353_06550 0.64 -1.3
1,456,772 - AO353_06550 0.64 +0.4
1,456,772 - AO353_06550 0.64 -1.9
1,456,994 - AO353_06550 0.81 -2.4
1,456,994 - AO353_06550 0.81 +0.4
1,456,994 - AO353_06550 0.81 -1.4
1,456,994 - AO353_06550 0.81 -1.5
1,456,994 - AO353_06550 0.81 +0.8
1,457,013 + AO353_06550 0.82 +0.0
1,457,014 - AO353_06550 0.82 +0.4
1,457,014 - AO353_06550 0.82 +0.2
1,457,014 - AO353_06550 0.82 -0.2
1,457,014 - AO353_06550 0.82 -1.3
1,457,014 - AO353_06550 0.82 -2.1
1,457,014 - AO353_06550 0.82 +0.5
1,457,014 - AO353_06550 0.82 +0.2
1,457,014 - AO353_06550 0.82 -0.8
1,457,014 - AO353_06550 0.82 -0.9
1,457,018 - AO353_06550 0.82 -1.6
1,457,018 - AO353_06550 0.82 -0.5
1,457,018 - AO353_06550 0.82 -2.1
1,457,018 - AO353_06550 0.82 -0.0
1,457,099 - AO353_06550 0.88 -1.2
1,457,099 - AO353_06550 0.88 -0.3
1,457,099 - AO353_06550 0.88 -2.0
1,457,099 - AO353_06550 0.88 +1.4
1,457,099 - AO353_06550 0.88 -1.5
1,457,235 - -1.9
1,457,235 - -1.1
1,457,244 - -1.0
1,457,244 - +0.8
1,457,244 - -1.4
1,457,244 - -0.3
1,457,256 - -1.7
1,457,256 - +0.4
1,457,256 - +1.4
1,457,256 - +0.3
1,457,256 - -0.3
1,457,267 + +0.2
1,457,268 - +1.0
1,457,268 - +0.0
1,457,291 - +0.9
1,457,291 - -0.2
1,457,291 - +1.2
1,457,314 + +0.6
1,457,314 + +0.8
1,457,369 - -0.8
1,457,369 - +1.4
1,457,470 + +1.4
1,457,493 + -0.2
1,457,493 + -0.5
1,457,493 + -0.1
1,457,494 - +1.2
1,457,494 - +1.7
1,457,494 - +0.5
1,457,494 - +0.4
1,457,494 - +1.0
1,457,494 - -1.3
1,457,494 - -1.0
1,457,495 + +0.9
1,457,495 + +0.4
1,457,496 - +0.9
1,457,533 - +0.7
1,457,603 + +0.0
1,457,658 + AO353_06555 0.10 -0.2
1,457,759 + AO353_06555 0.16 -0.2
1,457,760 - AO353_06555 0.16 +0.2
1,457,760 - AO353_06555 0.16 -0.3
1,457,760 - AO353_06555 0.16 +1.4
1,457,906 + AO353_06555 0.23 -0.5
1,457,906 + AO353_06555 0.23 +0.9
1,457,906 + AO353_06555 0.23 -1.3
1,457,907 - AO353_06555 0.23 +1.9
1,457,907 - AO353_06555 0.23 +0.0
1,457,907 - AO353_06555 0.23 +0.2
1,457,907 - AO353_06555 0.23 +0.5
1,457,907 - AO353_06555 0.23 -0.1
1,457,907 - AO353_06555 0.23 +0.1
1,457,907 - AO353_06555 0.23 +1.2
1,458,037 + AO353_06555 0.30 -0.6
1,458,037 + AO353_06555 0.30 +0.8
1,458,037 + AO353_06555 0.30 +0.4
1,458,037 + AO353_06555 0.30 -0.4
1,458,037 + AO353_06555 0.30 -1.0
1,458,037 + AO353_06555 0.30 +1.5
1,458,037 + AO353_06555 0.30 -2.7
1,458,038 - AO353_06555 0.30 -2.0
1,458,038 - AO353_06555 0.30 +0.5
1,458,040 + AO353_06555 0.30 -1.3
1,458,040 + AO353_06555 0.30 +0.7
1,458,041 - AO353_06555 0.30 -0.5
1,458,041 - AO353_06555 0.30 -0.5
1,458,041 - AO353_06555 0.30 +0.7
1,458,041 - AO353_06555 0.30 -1.7
1,458,041 - AO353_06555 0.30 +0.0

Or see this region's nucleotide sequence