Experiment: L-Aspartic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_06540 and AO353_06545 overlap by 8 nucleotides AO353_06545 and AO353_06550 overlap by 4 nucleotides AO353_06550 and AO353_06555 are separated by 205 nucleotides
AO353_06540: AO353_06540 - hypothetical protein, at 1,455,000 to 1,455,284
_06540
AO353_06545: AO353_06545 - aromatic acid decarboxylase, at 1,455,277 to 1,455,909
_06545
AO353_06550: AO353_06550 - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase, at 1,455,906 to 1,457,255
_06550
AO353_06555: AO353_06555 - Fis family transcriptional regulator, at 1,457,461 to 1,459,377
_06555
Position (kb)
1455
1456
1457
1458 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1455.001 kb on + strand at 1455.001 kb on + strand at 1455.001 kb on + strand at 1455.001 kb on + strand at 1455.002 kb on - strand at 1455.002 kb on - strand at 1455.002 kb on - strand at 1455.002 kb on - strand at 1455.002 kb on - strand at 1455.002 kb on - strand at 1455.002 kb on - strand at 1455.002 kb on - strand at 1455.163 kb on + strand, within AO353_06540 at 1455.187 kb on + strand, within AO353_06540 at 1455.188 kb on - strand, within AO353_06540 at 1455.188 kb on - strand, within AO353_06540 at 1455.188 kb on - strand, within AO353_06540 at 1455.273 kb on + strand at 1455.273 kb on + strand at 1455.273 kb on + strand at 1455.273 kb on + strand at 1455.273 kb on + strand at 1455.273 kb on + strand at 1455.273 kb on + strand at 1455.273 kb on + strand at 1455.273 kb on + strand at 1455.273 kb on + strand at 1455.273 kb on + strand at 1455.274 kb on - strand at 1455.274 kb on - strand at 1455.274 kb on - strand at 1455.274 kb on - strand at 1455.278 kb on + strand at 1455.278 kb on + strand at 1455.278 kb on + strand at 1455.278 kb on + strand at 1455.278 kb on + strand at 1455.278 kb on + strand at 1455.278 kb on + strand at 1455.278 kb on + strand at 1455.278 kb on + strand at 1455.278 kb on + strand at 1455.279 kb on - strand at 1455.279 kb on - strand at 1455.279 kb on - strand at 1455.279 kb on - strand at 1455.987 kb on - strand at 1456.011 kb on - strand at 1456.100 kb on - strand, within AO353_06550 at 1456.100 kb on - strand, within AO353_06550 at 1456.100 kb on - strand, within AO353_06550 at 1456.277 kb on - strand, within AO353_06550 at 1456.277 kb on - strand, within AO353_06550 at 1456.277 kb on - strand, within AO353_06550 at 1456.277 kb on - strand, within AO353_06550 at 1456.277 kb on - strand, within AO353_06550 at 1456.359 kb on - strand, within AO353_06550 at 1456.375 kb on - strand, within AO353_06550 at 1456.375 kb on - strand, within AO353_06550 at 1456.375 kb on - strand, within AO353_06550 at 1456.375 kb on - strand, within AO353_06550 at 1456.375 kb on - strand, within AO353_06550 at 1456.375 kb on - strand, within AO353_06550 at 1456.375 kb on - strand, within AO353_06550 at 1456.375 kb on - strand, within AO353_06550 at 1456.375 kb on - strand, within AO353_06550 at 1456.375 kb on - strand, within AO353_06550 at 1456.375 kb on - strand, within AO353_06550 at 1456.375 kb on - strand, within AO353_06550 at 1456.730 kb on - strand, within AO353_06550 at 1456.772 kb on - strand, within AO353_06550 at 1456.772 kb on - strand, within AO353_06550 at 1456.772 kb on - strand, within AO353_06550 at 1456.994 kb on - strand, within AO353_06550 at 1456.994 kb on - strand, within AO353_06550 at 1456.994 kb on - strand, within AO353_06550 at 1456.994 kb on - strand, within AO353_06550 at 1456.994 kb on - strand, within AO353_06550 at 1457.013 kb on + strand, within AO353_06550 at 1457.014 kb on - strand, within AO353_06550 at 1457.014 kb on - strand, within AO353_06550 at 1457.014 kb on - strand, within AO353_06550 at 1457.014 kb on - strand, within AO353_06550 at 1457.014 kb on - strand, within AO353_06550 at 1457.014 kb on - strand, within AO353_06550 at 1457.014 kb on - strand, within AO353_06550 at 1457.014 kb on - strand, within AO353_06550 at 1457.014 kb on - strand, within AO353_06550 at 1457.018 kb on - strand, within AO353_06550 at 1457.018 kb on - strand, within AO353_06550 at 1457.018 kb on - strand, within AO353_06550 at 1457.018 kb on - strand, within AO353_06550 at 1457.099 kb on - strand, within AO353_06550 at 1457.099 kb on - strand, within AO353_06550 at 1457.099 kb on - strand, within AO353_06550 at 1457.099 kb on - strand, within AO353_06550 at 1457.099 kb on - strand, within AO353_06550 at 1457.235 kb on - strand at 1457.235 kb on - strand at 1457.244 kb on - strand at 1457.244 kb on - strand at 1457.244 kb on - strand at 1457.244 kb on - strand at 1457.256 kb on - strand at 1457.256 kb on - strand at 1457.256 kb on - strand at 1457.256 kb on - strand at 1457.256 kb on - strand at 1457.267 kb on + strand at 1457.268 kb on - strand at 1457.268 kb on - strand at 1457.291 kb on - strand at 1457.291 kb on - strand at 1457.291 kb on - strand at 1457.314 kb on + strand at 1457.314 kb on + strand at 1457.369 kb on - strand at 1457.369 kb on - strand at 1457.470 kb on + strand at 1457.493 kb on + strand at 1457.493 kb on + strand at 1457.493 kb on + strand at 1457.494 kb on - strand at 1457.494 kb on - strand at 1457.494 kb on - strand at 1457.494 kb on - strand at 1457.494 kb on - strand at 1457.494 kb on - strand at 1457.494 kb on - strand at 1457.495 kb on + strand at 1457.495 kb on + strand at 1457.496 kb on - strand at 1457.533 kb on - strand at 1457.603 kb on + strand at 1457.658 kb on + strand, within AO353_06555 at 1457.759 kb on + strand, within AO353_06555 at 1457.760 kb on - strand, within AO353_06555 at 1457.760 kb on - strand, within AO353_06555 at 1457.760 kb on - strand, within AO353_06555 at 1457.906 kb on + strand, within AO353_06555 at 1457.906 kb on + strand, within AO353_06555 at 1457.906 kb on + strand, within AO353_06555 at 1457.907 kb on - strand, within AO353_06555 at 1457.907 kb on - strand, within AO353_06555 at 1457.907 kb on - strand, within AO353_06555 at 1457.907 kb on - strand, within AO353_06555 at 1457.907 kb on - strand, within AO353_06555 at 1457.907 kb on - strand, within AO353_06555 at 1457.907 kb on - strand, within AO353_06555 at 1458.037 kb on + strand, within AO353_06555 at 1458.037 kb on + strand, within AO353_06555 at 1458.037 kb on + strand, within AO353_06555 at 1458.037 kb on + strand, within AO353_06555 at 1458.037 kb on + strand, within AO353_06555 at 1458.037 kb on + strand, within AO353_06555 at 1458.037 kb on + strand, within AO353_06555 at 1458.038 kb on - strand, within AO353_06555 at 1458.038 kb on - strand, within AO353_06555 at 1458.040 kb on + strand, within AO353_06555 at 1458.040 kb on + strand, within AO353_06555 at 1458.041 kb on - strand, within AO353_06555 at 1458.041 kb on - strand, within AO353_06555 at 1458.041 kb on - strand, within AO353_06555 at 1458.041 kb on - strand, within AO353_06555 at 1458.041 kb on - strand, within AO353_06555
Per-strain Table
Position Strand Gene LocusTag Fraction L-Aspartic Acid (C) remove 1,455,001 + -0.5 1,455,001 + +0.8 1,455,001 + -0.3 1,455,001 + -1.0 1,455,002 - -1.6 1,455,002 - +0.1 1,455,002 - -2.0 1,455,002 - +1.5 1,455,002 - +1.8 1,455,002 - -1.0 1,455,002 - -0.1 1,455,002 - +0.8 1,455,163 + AO353_06540 0.57 -1.0 1,455,187 + AO353_06540 0.66 +0.9 1,455,188 - AO353_06540 0.66 +0.8 1,455,188 - AO353_06540 0.66 +2.4 1,455,188 - AO353_06540 0.66 -0.5 1,455,273 + +0.8 1,455,273 + -1.1 1,455,273 + +0.9 1,455,273 + +1.4 1,455,273 + -1.1 1,455,273 + +0.2 1,455,273 + -0.4 1,455,273 + -1.3 1,455,273 + +0.5 1,455,273 + -0.3 1,455,273 + +0.3 1,455,274 - +0.5 1,455,274 - -0.1 1,455,274 - -0.8 1,455,274 - +0.8 1,455,278 + +1.4 1,455,278 + +2.0 1,455,278 + +0.4 1,455,278 + -1.0 1,455,278 + +0.2 1,455,278 + -0.4 1,455,278 + +0.8 1,455,278 + -0.4 1,455,278 + +0.4 1,455,278 + +0.4 1,455,279 - +0.4 1,455,279 - -0.1 1,455,279 - +2.9 1,455,279 - -0.3 1,455,987 - -0.8 1,456,011 - -1.5 1,456,100 - AO353_06550 0.14 +0.8 1,456,100 - AO353_06550 0.14 -1.8 1,456,100 - AO353_06550 0.14 -1.6 1,456,277 - AO353_06550 0.27 -1.2 1,456,277 - AO353_06550 0.27 +0.5 1,456,277 - AO353_06550 0.27 -0.5 1,456,277 - AO353_06550 0.27 -2.0 1,456,277 - AO353_06550 0.27 -1.2 1,456,359 - AO353_06550 0.34 +0.0 1,456,375 - AO353_06550 0.35 +1.0 1,456,375 - AO353_06550 0.35 -1.9 1,456,375 - AO353_06550 0.35 +1.9 1,456,375 - AO353_06550 0.35 +0.4 1,456,375 - AO353_06550 0.35 -1.6 1,456,375 - AO353_06550 0.35 -1.0 1,456,375 - AO353_06550 0.35 +0.9 1,456,375 - AO353_06550 0.35 +1.4 1,456,375 - AO353_06550 0.35 +0.2 1,456,375 - AO353_06550 0.35 -0.2 1,456,375 - AO353_06550 0.35 -2.0 1,456,375 - AO353_06550 0.35 +0.4 1,456,730 - AO353_06550 0.61 -0.6 1,456,772 - AO353_06550 0.64 -1.3 1,456,772 - AO353_06550 0.64 +0.4 1,456,772 - AO353_06550 0.64 -1.9 1,456,994 - AO353_06550 0.81 -2.4 1,456,994 - AO353_06550 0.81 +0.4 1,456,994 - AO353_06550 0.81 -1.4 1,456,994 - AO353_06550 0.81 -1.5 1,456,994 - AO353_06550 0.81 +0.8 1,457,013 + AO353_06550 0.82 +0.0 1,457,014 - AO353_06550 0.82 +0.4 1,457,014 - AO353_06550 0.82 +0.2 1,457,014 - AO353_06550 0.82 -0.2 1,457,014 - AO353_06550 0.82 -1.3 1,457,014 - AO353_06550 0.82 -2.1 1,457,014 - AO353_06550 0.82 +0.5 1,457,014 - AO353_06550 0.82 +0.2 1,457,014 - AO353_06550 0.82 -0.8 1,457,014 - AO353_06550 0.82 -0.9 1,457,018 - AO353_06550 0.82 -1.6 1,457,018 - AO353_06550 0.82 -0.5 1,457,018 - AO353_06550 0.82 -2.1 1,457,018 - AO353_06550 0.82 -0.0 1,457,099 - AO353_06550 0.88 -1.2 1,457,099 - AO353_06550 0.88 -0.3 1,457,099 - AO353_06550 0.88 -2.0 1,457,099 - AO353_06550 0.88 +1.4 1,457,099 - AO353_06550 0.88 -1.5 1,457,235 - -1.9 1,457,235 - -1.1 1,457,244 - -1.0 1,457,244 - +0.8 1,457,244 - -1.4 1,457,244 - -0.3 1,457,256 - -1.7 1,457,256 - +0.4 1,457,256 - +1.4 1,457,256 - +0.3 1,457,256 - -0.3 1,457,267 + +0.2 1,457,268 - +1.0 1,457,268 - +0.0 1,457,291 - +0.9 1,457,291 - -0.2 1,457,291 - +1.2 1,457,314 + +0.6 1,457,314 + +0.8 1,457,369 - -0.8 1,457,369 - +1.4 1,457,470 + +1.4 1,457,493 + -0.2 1,457,493 + -0.5 1,457,493 + -0.1 1,457,494 - +1.2 1,457,494 - +1.7 1,457,494 - +0.5 1,457,494 - +0.4 1,457,494 - +1.0 1,457,494 - -1.3 1,457,494 - -1.0 1,457,495 + +0.9 1,457,495 + +0.4 1,457,496 - +0.9 1,457,533 - +0.7 1,457,603 + +0.0 1,457,658 + AO353_06555 0.10 -0.2 1,457,759 + AO353_06555 0.16 -0.2 1,457,760 - AO353_06555 0.16 +0.2 1,457,760 - AO353_06555 0.16 -0.3 1,457,760 - AO353_06555 0.16 +1.4 1,457,906 + AO353_06555 0.23 -0.5 1,457,906 + AO353_06555 0.23 +0.9 1,457,906 + AO353_06555 0.23 -1.3 1,457,907 - AO353_06555 0.23 +1.9 1,457,907 - AO353_06555 0.23 +0.0 1,457,907 - AO353_06555 0.23 +0.2 1,457,907 - AO353_06555 0.23 +0.5 1,457,907 - AO353_06555 0.23 -0.1 1,457,907 - AO353_06555 0.23 +0.1 1,457,907 - AO353_06555 0.23 +1.2 1,458,037 + AO353_06555 0.30 -0.6 1,458,037 + AO353_06555 0.30 +0.8 1,458,037 + AO353_06555 0.30 +0.4 1,458,037 + AO353_06555 0.30 -0.4 1,458,037 + AO353_06555 0.30 -1.0 1,458,037 + AO353_06555 0.30 +1.5 1,458,037 + AO353_06555 0.30 -2.7 1,458,038 - AO353_06555 0.30 -2.0 1,458,038 - AO353_06555 0.30 +0.5 1,458,040 + AO353_06555 0.30 -1.3 1,458,040 + AO353_06555 0.30 +0.7 1,458,041 - AO353_06555 0.30 -0.5 1,458,041 - AO353_06555 0.30 -0.5 1,458,041 - AO353_06555 0.30 +0.7 1,458,041 - AO353_06555 0.30 -1.7 1,458,041 - AO353_06555 0.30 +0.0
Or see this region's nucleotide sequence