Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_06540

Experiment: L-Aspartic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_06530 and AO353_06535 are separated by 28 nucleotidesAO353_06535 and AO353_06540 are separated by 185 nucleotidesAO353_06540 and AO353_06545 overlap by 8 nucleotidesAO353_06545 and AO353_06550 overlap by 4 nucleotides AO353_06530: AO353_06530 - peptidase C13, at 1,452,426 to 1,454,144 _06530 AO353_06535: AO353_06535 - nucleoside-diphosphate sugar epimerase, at 1,454,173 to 1,454,814 _06535 AO353_06540: AO353_06540 - hypothetical protein, at 1,455,000 to 1,455,284 _06540 AO353_06545: AO353_06545 - aromatic acid decarboxylase, at 1,455,277 to 1,455,909 _06545 AO353_06550: AO353_06550 - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase, at 1,455,906 to 1,457,255 _06550 Position (kb) 1454 1455 1456Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1454.071 kb on + strandat 1454.071 kb on + strandat 1454.072 kb on - strandat 1454.117 kb on - strandat 1454.142 kb on + strandat 1454.142 kb on + strandat 1454.142 kb on + strandat 1454.142 kb on + strandat 1454.143 kb on - strandat 1454.143 kb on - strandat 1454.143 kb on - strandat 1454.155 kb on + strandat 1454.155 kb on + strandat 1454.156 kb on - strandat 1454.156 kb on - strandat 1454.156 kb on - strandat 1454.172 kb on + strandat 1454.172 kb on + strandat 1454.172 kb on + strandat 1454.172 kb on + strandat 1454.172 kb on + strandat 1454.172 kb on + strandat 1454.172 kb on + strandat 1454.172 kb on + strandat 1454.172 kb on + strandat 1454.172 kb on + strandat 1454.172 kb on + strandat 1454.172 kb on + strandat 1454.172 kb on + strandat 1454.173 kb on - strandat 1454.173 kb on - strandat 1454.173 kb on - strandat 1454.173 kb on - strandat 1454.173 kb on - strandat 1454.173 kb on - strandat 1454.173 kb on - strandat 1454.173 kb on - strandat 1454.173 kb on - strandat 1454.173 kb on - strandat 1454.173 kb on - strandat 1454.173 kb on - strandat 1454.173 kb on - strandat 1454.173 kb on - strandat 1454.173 kb on - strandat 1454.173 kb on - strandat 1454.173 kb on - strandat 1454.176 kb on + strandat 1454.176 kb on + strandat 1454.176 kb on + strandat 1454.176 kb on + strandat 1454.176 kb on + strandat 1454.176 kb on + strandat 1454.176 kb on + strandat 1454.177 kb on - strandat 1454.177 kb on - strandat 1454.177 kb on - strandat 1454.177 kb on - strandat 1454.177 kb on - strandat 1454.177 kb on - strandat 1454.195 kb on + strandat 1454.195 kb on + strandat 1454.195 kb on + strandat 1454.195 kb on + strandat 1454.195 kb on + strandat 1454.195 kb on + strandat 1454.195 kb on + strandat 1454.195 kb on + strandat 1454.195 kb on + strandat 1454.195 kb on + strandat 1454.195 kb on + strandat 1454.195 kb on + strandat 1454.195 kb on + strandat 1454.196 kb on - strandat 1454.196 kb on - strandat 1454.196 kb on - strandat 1454.196 kb on - strandat 1454.196 kb on - strandat 1454.196 kb on - strandat 1454.196 kb on - strandat 1454.196 kb on - strandat 1454.196 kb on - strandat 1454.196 kb on - strandat 1454.196 kb on - strandat 1454.196 kb on - strandat 1454.196 kb on - strandat 1454.196 kb on - strandat 1454.196 kb on - strandat 1454.196 kb on - strandat 1454.196 kb on - strandat 1454.196 kb on - strandat 1454.196 kb on - strandat 1454.196 kb on - strandat 1454.196 kb on - strandat 1454.196 kb on - strandat 1454.234 kb on + strandat 1454.234 kb on + strandat 1454.234 kb on + strandat 1454.234 kb on + strandat 1454.234 kb on + strandat 1454.234 kb on + strandat 1454.235 kb on - strandat 1454.235 kb on - strandat 1454.235 kb on - strandat 1454.235 kb on - strandat 1454.235 kb on - strandat 1454.235 kb on - strandat 1454.380 kb on + strand, within AO353_06535at 1454.380 kb on + strand, within AO353_06535at 1454.380 kb on + strand, within AO353_06535at 1454.381 kb on - strand, within AO353_06535at 1454.545 kb on + strand, within AO353_06535at 1454.572 kb on + strand, within AO353_06535at 1454.572 kb on + strand, within AO353_06535at 1454.573 kb on - strand, within AO353_06535at 1454.607 kb on + strand, within AO353_06535at 1454.607 kb on + strand, within AO353_06535at 1454.607 kb on + strand, within AO353_06535at 1454.608 kb on - strand, within AO353_06535at 1454.608 kb on - strand, within AO353_06535at 1454.608 kb on - strand, within AO353_06535at 1454.608 kb on - strand, within AO353_06535at 1454.627 kb on + strand, within AO353_06535at 1454.628 kb on - strand, within AO353_06535at 1454.701 kb on + strand, within AO353_06535at 1454.701 kb on + strand, within AO353_06535at 1454.701 kb on + strand, within AO353_06535at 1454.701 kb on + strand, within AO353_06535at 1454.702 kb on - strand, within AO353_06535at 1454.702 kb on - strand, within AO353_06535at 1454.702 kb on - strand, within AO353_06535at 1454.702 kb on - strand, within AO353_06535at 1454.808 kb on + strandat 1454.808 kb on + strandat 1454.809 kb on - strandat 1454.809 kb on - strandat 1454.812 kb on + strandat 1454.812 kb on + strandat 1454.812 kb on + strandat 1454.813 kb on - strandat 1454.813 kb on - strandat 1454.813 kb on - strandat 1454.813 kb on - strandat 1454.813 kb on - strandat 1454.813 kb on - strandat 1454.826 kb on - strandat 1454.879 kb on + strandat 1455.001 kb on + strandat 1455.001 kb on + strandat 1455.001 kb on + strandat 1455.001 kb on + strandat 1455.002 kb on - strandat 1455.002 kb on - strandat 1455.002 kb on - strandat 1455.002 kb on - strandat 1455.002 kb on - strandat 1455.002 kb on - strandat 1455.002 kb on - strandat 1455.002 kb on - strandat 1455.163 kb on + strand, within AO353_06540at 1455.187 kb on + strand, within AO353_06540at 1455.188 kb on - strand, within AO353_06540at 1455.188 kb on - strand, within AO353_06540at 1455.188 kb on - strand, within AO353_06540at 1455.273 kb on + strandat 1455.273 kb on + strandat 1455.273 kb on + strandat 1455.273 kb on + strandat 1455.273 kb on + strandat 1455.273 kb on + strandat 1455.273 kb on + strandat 1455.273 kb on + strandat 1455.273 kb on + strandat 1455.273 kb on + strandat 1455.273 kb on + strandat 1455.274 kb on - strandat 1455.274 kb on - strandat 1455.274 kb on - strandat 1455.274 kb on - strandat 1455.278 kb on + strandat 1455.278 kb on + strandat 1455.278 kb on + strandat 1455.278 kb on + strandat 1455.278 kb on + strandat 1455.278 kb on + strandat 1455.278 kb on + strandat 1455.278 kb on + strandat 1455.278 kb on + strandat 1455.278 kb on + strandat 1455.279 kb on - strandat 1455.279 kb on - strandat 1455.279 kb on - strandat 1455.279 kb on - strandat 1455.987 kb on - strandat 1456.011 kb on - strandat 1456.100 kb on - strand, within AO353_06550at 1456.100 kb on - strand, within AO353_06550at 1456.100 kb on - strand, within AO353_06550at 1456.277 kb on - strand, within AO353_06550at 1456.277 kb on - strand, within AO353_06550at 1456.277 kb on - strand, within AO353_06550at 1456.277 kb on - strand, within AO353_06550at 1456.277 kb on - strand, within AO353_06550

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
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1,454,071 + +1.8
1,454,071 + +0.3
1,454,072 - -0.7
1,454,117 - -1.2
1,454,142 + -0.8
1,454,142 + +0.0
1,454,142 + +0.3
1,454,142 + +0.6
1,454,143 - -0.1
1,454,143 - +0.3
1,454,143 - +0.2
1,454,155 + +0.0
1,454,155 + -1.0
1,454,156 - -1.0
1,454,156 - +0.8
1,454,156 - +0.2
1,454,172 + -0.6
1,454,172 + -0.7
1,454,172 + +0.3
1,454,172 + -0.8
1,454,172 + +0.4
1,454,172 + -0.2
1,454,172 + +0.6
1,454,172 + -0.9
1,454,172 + +0.3
1,454,172 + +2.3
1,454,172 + +0.3
1,454,172 + -0.7
1,454,172 + -1.7
1,454,173 - -1.1
1,454,173 - -0.8
1,454,173 - +0.1
1,454,173 - -0.2
1,454,173 - +0.3
1,454,173 - -0.1
1,454,173 - -2.1
1,454,173 - -0.4
1,454,173 - -0.4
1,454,173 - +1.9
1,454,173 - -0.5
1,454,173 - +0.5
1,454,173 - -0.4
1,454,173 - +0.0
1,454,173 - +0.5
1,454,173 - -2.2
1,454,173 - +0.8
1,454,176 + -0.1
1,454,176 + -0.5
1,454,176 + -1.2
1,454,176 + -0.1
1,454,176 + +0.2
1,454,176 + -1.4
1,454,176 + +0.3
1,454,177 - -1.4
1,454,177 - +2.3
1,454,177 - +0.1
1,454,177 - +0.8
1,454,177 - -0.7
1,454,177 - +0.8
1,454,195 + +0.8
1,454,195 + -0.6
1,454,195 + -2.3
1,454,195 + -1.4
1,454,195 + -1.0
1,454,195 + +0.8
1,454,195 + -0.3
1,454,195 + -0.5
1,454,195 + +2.3
1,454,195 + -1.1
1,454,195 + +0.4
1,454,195 + +0.3
1,454,195 + -1.7
1,454,196 - +1.0
1,454,196 - +0.0
1,454,196 - -0.1
1,454,196 - -0.8
1,454,196 - -0.7
1,454,196 - +0.8
1,454,196 - +0.6
1,454,196 - -1.0
1,454,196 - +0.3
1,454,196 - +0.5
1,454,196 - +0.0
1,454,196 - +0.0
1,454,196 - -0.7
1,454,196 - -0.5
1,454,196 - +0.0
1,454,196 - -0.0
1,454,196 - -0.1
1,454,196 - +1.3
1,454,196 - +1.0
1,454,196 - -0.2
1,454,196 - -1.0
1,454,196 - +1.3
1,454,234 + -0.2
1,454,234 + +1.9
1,454,234 + +1.3
1,454,234 + +0.0
1,454,234 + +0.4
1,454,234 + -1.4
1,454,235 - -1.8
1,454,235 - -0.1
1,454,235 - +0.8
1,454,235 - -1.1
1,454,235 - +0.2
1,454,235 - +0.2
1,454,380 + AO353_06535 0.32 +1.1
1,454,380 + AO353_06535 0.32 -0.0
1,454,380 + AO353_06535 0.32 -0.5
1,454,381 - AO353_06535 0.32 -0.5
1,454,545 + AO353_06535 0.58 +1.3
1,454,572 + AO353_06535 0.62 -0.4
1,454,572 + AO353_06535 0.62 -1.1
1,454,573 - AO353_06535 0.62 +0.9
1,454,607 + AO353_06535 0.68 -1.6
1,454,607 + AO353_06535 0.68 +1.3
1,454,607 + AO353_06535 0.68 -0.2
1,454,608 - AO353_06535 0.68 -1.1
1,454,608 - AO353_06535 0.68 -1.1
1,454,608 - AO353_06535 0.68 +0.6
1,454,608 - AO353_06535 0.68 -0.1
1,454,627 + AO353_06535 0.71 -1.2
1,454,628 - AO353_06535 0.71 +0.2
1,454,701 + AO353_06535 0.82 +0.2
1,454,701 + AO353_06535 0.82 +1.0
1,454,701 + AO353_06535 0.82 -1.5
1,454,701 + AO353_06535 0.82 +1.0
1,454,702 - AO353_06535 0.82 +0.6
1,454,702 - AO353_06535 0.82 -0.8
1,454,702 - AO353_06535 0.82 +0.8
1,454,702 - AO353_06535 0.82 -1.2
1,454,808 + +0.2
1,454,808 + -0.7
1,454,809 - +0.0
1,454,809 - -1.7
1,454,812 + -1.0
1,454,812 + +0.6
1,454,812 + +0.5
1,454,813 - +0.2
1,454,813 - +1.8
1,454,813 - +1.3
1,454,813 - -0.5
1,454,813 - -0.5
1,454,813 - -0.5
1,454,826 - -2.1
1,454,879 + +1.4
1,455,001 + -0.5
1,455,001 + +0.8
1,455,001 + -0.3
1,455,001 + -1.0
1,455,002 - -1.6
1,455,002 - +0.1
1,455,002 - -2.0
1,455,002 - +1.5
1,455,002 - +1.8
1,455,002 - -1.0
1,455,002 - -0.1
1,455,002 - +0.8
1,455,163 + AO353_06540 0.57 -1.0
1,455,187 + AO353_06540 0.66 +0.9
1,455,188 - AO353_06540 0.66 +0.8
1,455,188 - AO353_06540 0.66 +2.4
1,455,188 - AO353_06540 0.66 -0.5
1,455,273 + +0.8
1,455,273 + -1.1
1,455,273 + +0.9
1,455,273 + +1.4
1,455,273 + -1.1
1,455,273 + +0.2
1,455,273 + -0.4
1,455,273 + -1.3
1,455,273 + +0.5
1,455,273 + -0.3
1,455,273 + +0.3
1,455,274 - +0.5
1,455,274 - -0.1
1,455,274 - -0.8
1,455,274 - +0.8
1,455,278 + +1.4
1,455,278 + +2.0
1,455,278 + +0.4
1,455,278 + -1.0
1,455,278 + +0.2
1,455,278 + -0.4
1,455,278 + +0.8
1,455,278 + -0.4
1,455,278 + +0.4
1,455,278 + +0.4
1,455,279 - +0.4
1,455,279 - -0.1
1,455,279 - +2.9
1,455,279 - -0.3
1,455,987 - -0.8
1,456,011 - -1.5
1,456,100 - AO353_06550 0.14 +0.8
1,456,100 - AO353_06550 0.14 -1.8
1,456,100 - AO353_06550 0.14 -1.6
1,456,277 - AO353_06550 0.27 -1.2
1,456,277 - AO353_06550 0.27 +0.5
1,456,277 - AO353_06550 0.27 -0.5
1,456,277 - AO353_06550 0.27 -2.0
1,456,277 - AO353_06550 0.27 -1.2

Or see this region's nucleotide sequence