Experiment: L-Aspartic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_06530 and AO353_06535 are separated by 28 nucleotides AO353_06535 and AO353_06540 are separated by 185 nucleotides AO353_06540 and AO353_06545 overlap by 8 nucleotides AO353_06545 and AO353_06550 overlap by 4 nucleotides
AO353_06530: AO353_06530 - peptidase C13, at 1,452,426 to 1,454,144
_06530
AO353_06535: AO353_06535 - nucleoside-diphosphate sugar epimerase, at 1,454,173 to 1,454,814
_06535
AO353_06540: AO353_06540 - hypothetical protein, at 1,455,000 to 1,455,284
_06540
AO353_06545: AO353_06545 - aromatic acid decarboxylase, at 1,455,277 to 1,455,909
_06545
AO353_06550: AO353_06550 - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase, at 1,455,906 to 1,457,255
_06550
Position (kb)
1454
1455
1456 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1454.071 kb on + strand at 1454.071 kb on + strand at 1454.072 kb on - strand at 1454.117 kb on - strand at 1454.142 kb on + strand at 1454.142 kb on + strand at 1454.142 kb on + strand at 1454.142 kb on + strand at 1454.143 kb on - strand at 1454.143 kb on - strand at 1454.143 kb on - strand at 1454.155 kb on + strand at 1454.155 kb on + strand at 1454.156 kb on - strand at 1454.156 kb on - strand at 1454.156 kb on - strand at 1454.172 kb on + strand at 1454.172 kb on + strand at 1454.172 kb on + strand at 1454.172 kb on + strand at 1454.172 kb on + strand at 1454.172 kb on + strand at 1454.172 kb on + strand at 1454.172 kb on + strand at 1454.172 kb on + strand at 1454.172 kb on + strand at 1454.172 kb on + strand at 1454.172 kb on + strand at 1454.172 kb on + strand at 1454.173 kb on - strand at 1454.173 kb on - strand at 1454.173 kb on - strand at 1454.173 kb on - strand at 1454.173 kb on - strand at 1454.173 kb on - strand at 1454.173 kb on - strand at 1454.173 kb on - strand at 1454.173 kb on - strand at 1454.173 kb on - strand at 1454.173 kb on - strand at 1454.173 kb on - strand at 1454.173 kb on - strand at 1454.173 kb on - strand at 1454.173 kb on - strand at 1454.173 kb on - strand at 1454.173 kb on - strand at 1454.176 kb on + strand at 1454.176 kb on + strand at 1454.176 kb on + strand at 1454.176 kb on + strand at 1454.176 kb on + strand at 1454.176 kb on + strand at 1454.176 kb on + strand at 1454.177 kb on - strand at 1454.177 kb on - strand at 1454.177 kb on - strand at 1454.177 kb on - strand at 1454.177 kb on - strand at 1454.177 kb on - strand at 1454.195 kb on + strand at 1454.195 kb on + strand at 1454.195 kb on + strand at 1454.195 kb on + strand at 1454.195 kb on + strand at 1454.195 kb on + strand at 1454.195 kb on + strand at 1454.195 kb on + strand at 1454.195 kb on + strand at 1454.195 kb on + strand at 1454.195 kb on + strand at 1454.195 kb on + strand at 1454.195 kb on + strand at 1454.196 kb on - strand at 1454.196 kb on - strand at 1454.196 kb on - strand at 1454.196 kb on - strand at 1454.196 kb on - strand at 1454.196 kb on - strand at 1454.196 kb on - strand at 1454.196 kb on - strand at 1454.196 kb on - strand at 1454.196 kb on - strand at 1454.196 kb on - strand at 1454.196 kb on - strand at 1454.196 kb on - strand at 1454.196 kb on - strand at 1454.196 kb on - strand at 1454.196 kb on - strand at 1454.196 kb on - strand at 1454.196 kb on - strand at 1454.196 kb on - strand at 1454.196 kb on - strand at 1454.196 kb on - strand at 1454.196 kb on - strand at 1454.234 kb on + strand at 1454.234 kb on + strand at 1454.234 kb on + strand at 1454.234 kb on + strand at 1454.234 kb on + strand at 1454.234 kb on + strand at 1454.235 kb on - strand at 1454.235 kb on - strand at 1454.235 kb on - strand at 1454.235 kb on - strand at 1454.235 kb on - strand at 1454.235 kb on - strand at 1454.380 kb on + strand, within AO353_06535 at 1454.380 kb on + strand, within AO353_06535 at 1454.380 kb on + strand, within AO353_06535 at 1454.381 kb on - strand, within AO353_06535 at 1454.545 kb on + strand, within AO353_06535 at 1454.572 kb on + strand, within AO353_06535 at 1454.572 kb on + strand, within AO353_06535 at 1454.573 kb on - strand, within AO353_06535 at 1454.607 kb on + strand, within AO353_06535 at 1454.607 kb on + strand, within AO353_06535 at 1454.607 kb on + strand, within AO353_06535 at 1454.608 kb on - strand, within AO353_06535 at 1454.608 kb on - strand, within AO353_06535 at 1454.608 kb on - strand, within AO353_06535 at 1454.608 kb on - strand, within AO353_06535 at 1454.627 kb on + strand, within AO353_06535 at 1454.628 kb on - strand, within AO353_06535 at 1454.701 kb on + strand, within AO353_06535 at 1454.701 kb on + strand, within AO353_06535 at 1454.701 kb on + strand, within AO353_06535 at 1454.701 kb on + strand, within AO353_06535 at 1454.702 kb on - strand, within AO353_06535 at 1454.702 kb on - strand, within AO353_06535 at 1454.702 kb on - strand, within AO353_06535 at 1454.702 kb on - strand, within AO353_06535 at 1454.808 kb on + strand at 1454.808 kb on + strand at 1454.809 kb on - strand at 1454.809 kb on - strand at 1454.812 kb on + strand at 1454.812 kb on + strand at 1454.812 kb on + strand at 1454.813 kb on - strand at 1454.813 kb on - strand at 1454.813 kb on - strand at 1454.813 kb on - strand at 1454.813 kb on - strand at 1454.813 kb on - strand at 1454.826 kb on - strand at 1454.879 kb on + strand at 1455.001 kb on + strand at 1455.001 kb on + strand at 1455.001 kb on + strand at 1455.001 kb on + strand at 1455.002 kb on - strand at 1455.002 kb on - strand at 1455.002 kb on - strand at 1455.002 kb on - strand at 1455.002 kb on - strand at 1455.002 kb on - strand at 1455.002 kb on - strand at 1455.002 kb on - strand at 1455.163 kb on + strand, within AO353_06540 at 1455.187 kb on + strand, within AO353_06540 at 1455.188 kb on - strand, within AO353_06540 at 1455.188 kb on - strand, within AO353_06540 at 1455.188 kb on - strand, within AO353_06540 at 1455.273 kb on + strand at 1455.273 kb on + strand at 1455.273 kb on + strand at 1455.273 kb on + strand at 1455.273 kb on + strand at 1455.273 kb on + strand at 1455.273 kb on + strand at 1455.273 kb on + strand at 1455.273 kb on + strand at 1455.273 kb on + strand at 1455.273 kb on + strand at 1455.274 kb on - strand at 1455.274 kb on - strand at 1455.274 kb on - strand at 1455.274 kb on - strand at 1455.278 kb on + strand at 1455.278 kb on + strand at 1455.278 kb on + strand at 1455.278 kb on + strand at 1455.278 kb on + strand at 1455.278 kb on + strand at 1455.278 kb on + strand at 1455.278 kb on + strand at 1455.278 kb on + strand at 1455.278 kb on + strand at 1455.279 kb on - strand at 1455.279 kb on - strand at 1455.279 kb on - strand at 1455.279 kb on - strand at 1455.987 kb on - strand at 1456.011 kb on - strand at 1456.100 kb on - strand, within AO353_06550 at 1456.100 kb on - strand, within AO353_06550 at 1456.100 kb on - strand, within AO353_06550 at 1456.277 kb on - strand, within AO353_06550 at 1456.277 kb on - strand, within AO353_06550 at 1456.277 kb on - strand, within AO353_06550 at 1456.277 kb on - strand, within AO353_06550 at 1456.277 kb on - strand, within AO353_06550
Per-strain Table
Position Strand Gene LocusTag Fraction L-Aspartic Acid (C) remove 1,454,071 + +1.8 1,454,071 + +0.3 1,454,072 - -0.7 1,454,117 - -1.2 1,454,142 + -0.8 1,454,142 + +0.0 1,454,142 + +0.3 1,454,142 + +0.6 1,454,143 - -0.1 1,454,143 - +0.3 1,454,143 - +0.2 1,454,155 + +0.0 1,454,155 + -1.0 1,454,156 - -1.0 1,454,156 - +0.8 1,454,156 - +0.2 1,454,172 + -0.6 1,454,172 + -0.7 1,454,172 + +0.3 1,454,172 + -0.8 1,454,172 + +0.4 1,454,172 + -0.2 1,454,172 + +0.6 1,454,172 + -0.9 1,454,172 + +0.3 1,454,172 + +2.3 1,454,172 + +0.3 1,454,172 + -0.7 1,454,172 + -1.7 1,454,173 - -1.1 1,454,173 - -0.8 1,454,173 - +0.1 1,454,173 - -0.2 1,454,173 - +0.3 1,454,173 - -0.1 1,454,173 - -2.1 1,454,173 - -0.4 1,454,173 - -0.4 1,454,173 - +1.9 1,454,173 - -0.5 1,454,173 - +0.5 1,454,173 - -0.4 1,454,173 - +0.0 1,454,173 - +0.5 1,454,173 - -2.2 1,454,173 - +0.8 1,454,176 + -0.1 1,454,176 + -0.5 1,454,176 + -1.2 1,454,176 + -0.1 1,454,176 + +0.2 1,454,176 + -1.4 1,454,176 + +0.3 1,454,177 - -1.4 1,454,177 - +2.3 1,454,177 - +0.1 1,454,177 - +0.8 1,454,177 - -0.7 1,454,177 - +0.8 1,454,195 + +0.8 1,454,195 + -0.6 1,454,195 + -2.3 1,454,195 + -1.4 1,454,195 + -1.0 1,454,195 + +0.8 1,454,195 + -0.3 1,454,195 + -0.5 1,454,195 + +2.3 1,454,195 + -1.1 1,454,195 + +0.4 1,454,195 + +0.3 1,454,195 + -1.7 1,454,196 - +1.0 1,454,196 - +0.0 1,454,196 - -0.1 1,454,196 - -0.8 1,454,196 - -0.7 1,454,196 - +0.8 1,454,196 - +0.6 1,454,196 - -1.0 1,454,196 - +0.3 1,454,196 - +0.5 1,454,196 - +0.0 1,454,196 - +0.0 1,454,196 - -0.7 1,454,196 - -0.5 1,454,196 - +0.0 1,454,196 - -0.0 1,454,196 - -0.1 1,454,196 - +1.3 1,454,196 - +1.0 1,454,196 - -0.2 1,454,196 - -1.0 1,454,196 - +1.3 1,454,234 + -0.2 1,454,234 + +1.9 1,454,234 + +1.3 1,454,234 + +0.0 1,454,234 + +0.4 1,454,234 + -1.4 1,454,235 - -1.8 1,454,235 - -0.1 1,454,235 - +0.8 1,454,235 - -1.1 1,454,235 - +0.2 1,454,235 - +0.2 1,454,380 + AO353_06535 0.32 +1.1 1,454,380 + AO353_06535 0.32 -0.0 1,454,380 + AO353_06535 0.32 -0.5 1,454,381 - AO353_06535 0.32 -0.5 1,454,545 + AO353_06535 0.58 +1.3 1,454,572 + AO353_06535 0.62 -0.4 1,454,572 + AO353_06535 0.62 -1.1 1,454,573 - AO353_06535 0.62 +0.9 1,454,607 + AO353_06535 0.68 -1.6 1,454,607 + AO353_06535 0.68 +1.3 1,454,607 + AO353_06535 0.68 -0.2 1,454,608 - AO353_06535 0.68 -1.1 1,454,608 - AO353_06535 0.68 -1.1 1,454,608 - AO353_06535 0.68 +0.6 1,454,608 - AO353_06535 0.68 -0.1 1,454,627 + AO353_06535 0.71 -1.2 1,454,628 - AO353_06535 0.71 +0.2 1,454,701 + AO353_06535 0.82 +0.2 1,454,701 + AO353_06535 0.82 +1.0 1,454,701 + AO353_06535 0.82 -1.5 1,454,701 + AO353_06535 0.82 +1.0 1,454,702 - AO353_06535 0.82 +0.6 1,454,702 - AO353_06535 0.82 -0.8 1,454,702 - AO353_06535 0.82 +0.8 1,454,702 - AO353_06535 0.82 -1.2 1,454,808 + +0.2 1,454,808 + -0.7 1,454,809 - +0.0 1,454,809 - -1.7 1,454,812 + -1.0 1,454,812 + +0.6 1,454,812 + +0.5 1,454,813 - +0.2 1,454,813 - +1.8 1,454,813 - +1.3 1,454,813 - -0.5 1,454,813 - -0.5 1,454,813 - -0.5 1,454,826 - -2.1 1,454,879 + +1.4 1,455,001 + -0.5 1,455,001 + +0.8 1,455,001 + -0.3 1,455,001 + -1.0 1,455,002 - -1.6 1,455,002 - +0.1 1,455,002 - -2.0 1,455,002 - +1.5 1,455,002 - +1.8 1,455,002 - -1.0 1,455,002 - -0.1 1,455,002 - +0.8 1,455,163 + AO353_06540 0.57 -1.0 1,455,187 + AO353_06540 0.66 +0.9 1,455,188 - AO353_06540 0.66 +0.8 1,455,188 - AO353_06540 0.66 +2.4 1,455,188 - AO353_06540 0.66 -0.5 1,455,273 + +0.8 1,455,273 + -1.1 1,455,273 + +0.9 1,455,273 + +1.4 1,455,273 + -1.1 1,455,273 + +0.2 1,455,273 + -0.4 1,455,273 + -1.3 1,455,273 + +0.5 1,455,273 + -0.3 1,455,273 + +0.3 1,455,274 - +0.5 1,455,274 - -0.1 1,455,274 - -0.8 1,455,274 - +0.8 1,455,278 + +1.4 1,455,278 + +2.0 1,455,278 + +0.4 1,455,278 + -1.0 1,455,278 + +0.2 1,455,278 + -0.4 1,455,278 + +0.8 1,455,278 + -0.4 1,455,278 + +0.4 1,455,278 + +0.4 1,455,279 - +0.4 1,455,279 - -0.1 1,455,279 - +2.9 1,455,279 - -0.3 1,455,987 - -0.8 1,456,011 - -1.5 1,456,100 - AO353_06550 0.14 +0.8 1,456,100 - AO353_06550 0.14 -1.8 1,456,100 - AO353_06550 0.14 -1.6 1,456,277 - AO353_06550 0.27 -1.2 1,456,277 - AO353_06550 0.27 +0.5 1,456,277 - AO353_06550 0.27 -0.5 1,456,277 - AO353_06550 0.27 -2.0 1,456,277 - AO353_06550 0.27 -1.2
Or see this region's nucleotide sequence