Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_06040

Experiment: L-Aspartic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_06035 and AO353_06040 are separated by 65 nucleotidesAO353_06040 and AO353_06045 overlap by 4 nucleotides AO353_06035: AO353_06035 - amino acid ABC transporter permease/ATP-binding protein, at 1,339,009 to 1,340,547 _06035 AO353_06040: AO353_06040 - exodeoxyribonuclease V subunit alpha, at 1,340,613 to 1,342,700 _06040 AO353_06045: AO353_06045 - exodeoxyribonuclease V subunit beta, at 1,342,697 to 1,346,386 _06045 Position (kb) 1340 1341 1342 1343Strain fitness (log2 ratio) -2 -1 0 1 2at 1339.613 kb on - strand, within AO353_06035at 1339.613 kb on - strand, within AO353_06035at 1339.613 kb on - strand, within AO353_06035at 1339.613 kb on - strand, within AO353_06035at 1339.613 kb on - strand, within AO353_06035at 1339.613 kb on - strandat 1339.613 kb on - strand, within AO353_06035at 1339.613 kb on - strand, within AO353_06035at 1339.613 kb on - strand, within AO353_06035at 1339.613 kb on - strand, within AO353_06035at 1339.613 kb on - strand, within AO353_06035at 1339.698 kb on - strand, within AO353_06035at 1339.790 kb on + strand, within AO353_06035at 1339.791 kb on - strand, within AO353_06035at 1339.791 kb on - strand, within AO353_06035at 1339.791 kb on - strand, within AO353_06035at 1339.903 kb on - strand, within AO353_06035at 1339.941 kb on + strand, within AO353_06035at 1339.941 kb on + strand, within AO353_06035at 1339.942 kb on - strand, within AO353_06035at 1339.942 kb on - strand, within AO353_06035at 1339.964 kb on + strand, within AO353_06035at 1339.964 kb on + strand, within AO353_06035at 1339.964 kb on + strand, within AO353_06035at 1339.965 kb on - strand, within AO353_06035at 1339.965 kb on - strand, within AO353_06035at 1340.045 kb on + strand, within AO353_06035at 1340.045 kb on + strand, within AO353_06035at 1340.045 kb on + strand, within AO353_06035at 1340.046 kb on - strand, within AO353_06035at 1340.194 kb on + strand, within AO353_06035at 1340.195 kb on - strand, within AO353_06035at 1340.321 kb on + strand, within AO353_06035at 1340.321 kb on + strand, within AO353_06035at 1340.321 kb on + strand, within AO353_06035at 1340.321 kb on + strand, within AO353_06035at 1340.321 kb on + strand, within AO353_06035at 1340.321 kb on + strand, within AO353_06035at 1340.321 kb on + strand, within AO353_06035at 1340.321 kb on + strand, within AO353_06035at 1340.321 kb on + strand, within AO353_06035at 1340.321 kb on + strand, within AO353_06035at 1340.321 kb on + strand, within AO353_06035at 1340.321 kb on + strand, within AO353_06035at 1340.321 kb on + strand, within AO353_06035at 1340.321 kb on + strand, within AO353_06035at 1340.321 kb on + strand, within AO353_06035at 1340.321 kb on + strand, within AO353_06035at 1340.322 kb on - strand, within AO353_06035at 1340.322 kb on - strand, within AO353_06035at 1340.322 kb on - strand, within AO353_06035at 1340.322 kb on - strand, within AO353_06035at 1340.322 kb on - strand, within AO353_06035at 1340.322 kb on - strand, within AO353_06035at 1340.545 kb on + strandat 1340.545 kb on + strandat 1340.545 kb on + strandat 1340.546 kb on - strandat 1340.546 kb on - strandat 1340.546 kb on - strandat 1340.578 kb on + strandat 1340.578 kb on + strandat 1340.661 kb on + strandat 1340.734 kb on + strandat 1340.735 kb on - strandat 1340.834 kb on - strand, within AO353_06040at 1340.916 kb on + strand, within AO353_06040at 1340.916 kb on + strand, within AO353_06040at 1340.916 kb on + strand, within AO353_06040at 1340.917 kb on - strand, within AO353_06040at 1341.251 kb on - strand, within AO353_06040at 1341.294 kb on + strand, within AO353_06040at 1342.172 kb on + strand, within AO353_06040at 1342.251 kb on + strand, within AO353_06040at 1342.251 kb on + strand, within AO353_06040at 1342.602 kb on + strandat 1342.700 kb on + strandat 1342.700 kb on + strandat 1342.700 kb on + strandat 1342.700 kb on + strandat 1342.701 kb on - strandat 1342.701 kb on - strandat 1342.701 kb on - strandat 1342.701 kb on - strandat 1342.701 kb on - strandat 1342.701 kb on - strandat 1342.706 kb on + strandat 1342.706 kb on + strandat 1342.706 kb on + strandat 1342.706 kb on + strandat 1342.706 kb on + strandat 1342.706 kb on + strandat 1342.706 kb on + strandat 1342.706 kb on + strandat 1342.707 kb on - strandat 1342.707 kb on - strandat 1342.707 kb on - strandat 1342.707 kb on - strandat 1342.707 kb on - strandat 1342.707 kb on - strandat 1342.707 kb on - strandat 1342.707 kb on - strandat 1342.707 kb on - strandat 1342.707 kb on - strandat 1342.707 kb on - strandat 1342.707 kb on - strandat 1342.708 kb on + strandat 1342.708 kb on + strandat 1342.708 kb on + strandat 1342.708 kb on + strandat 1342.708 kb on + strandat 1342.708 kb on + strandat 1342.708 kb on + strandat 1342.709 kb on - strandat 1342.709 kb on - strandat 1342.709 kb on - strandat 1342.709 kb on - strandat 1342.803 kb on + strandat 1342.803 kb on + strandat 1342.804 kb on - strandat 1342.845 kb on + strandat 1342.845 kb on + strandat 1342.846 kb on - strandat 1342.919 kb on + strandat 1342.932 kb on + strandat 1342.933 kb on - strandat 1342.933 kb on - strandat 1343.034 kb on + strandat 1343.035 kb on - strandat 1343.257 kb on + strand, within AO353_06045at 1343.257 kb on + strand, within AO353_06045at 1343.592 kb on + strand, within AO353_06045at 1343.593 kb on - strand, within AO353_06045

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
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1,339,613 - AO353_06035 0.39 -0.3
1,339,613 - AO353_06035 0.39 +0.5
1,339,613 - AO353_06035 0.39 +1.3
1,339,613 - AO353_06035 0.39 -1.1
1,339,613 - AO353_06035 0.39 -0.5
1,339,613 - +0.7
1,339,613 - AO353_06035 0.39 -0.3
1,339,613 - AO353_06035 0.39 -0.4
1,339,613 - AO353_06035 0.39 +0.5
1,339,613 - AO353_06035 0.39 -0.1
1,339,613 - AO353_06035 0.39 +0.1
1,339,698 - AO353_06035 0.45 -0.5
1,339,790 + AO353_06035 0.51 -0.1
1,339,791 - AO353_06035 0.51 -1.9
1,339,791 - AO353_06035 0.51 -0.0
1,339,791 - AO353_06035 0.51 -0.2
1,339,903 - AO353_06035 0.58 +0.2
1,339,941 + AO353_06035 0.61 +0.9
1,339,941 + AO353_06035 0.61 +1.7
1,339,942 - AO353_06035 0.61 -1.0
1,339,942 - AO353_06035 0.61 +1.0
1,339,964 + AO353_06035 0.62 -0.9
1,339,964 + AO353_06035 0.62 +1.0
1,339,964 + AO353_06035 0.62 +0.3
1,339,965 - AO353_06035 0.62 -0.5
1,339,965 - AO353_06035 0.62 -0.5
1,340,045 + AO353_06035 0.67 -0.2
1,340,045 + AO353_06035 0.67 -0.0
1,340,045 + AO353_06035 0.67 -1.3
1,340,046 - AO353_06035 0.67 -1.0
1,340,194 + AO353_06035 0.77 +0.9
1,340,195 - AO353_06035 0.77 +0.3
1,340,321 + AO353_06035 0.85 +1.7
1,340,321 + AO353_06035 0.85 -0.5
1,340,321 + AO353_06035 0.85 -2.1
1,340,321 + AO353_06035 0.85 +0.5
1,340,321 + AO353_06035 0.85 +1.6
1,340,321 + AO353_06035 0.85 +0.6
1,340,321 + AO353_06035 0.85 -0.3
1,340,321 + AO353_06035 0.85 +1.7
1,340,321 + AO353_06035 0.85 +1.5
1,340,321 + AO353_06035 0.85 -1.1
1,340,321 + AO353_06035 0.85 +0.1
1,340,321 + AO353_06035 0.85 +0.7
1,340,321 + AO353_06035 0.85 -1.6
1,340,321 + AO353_06035 0.85 -0.9
1,340,321 + AO353_06035 0.85 +0.2
1,340,321 + AO353_06035 0.85 +1.3
1,340,322 - AO353_06035 0.85 +0.1
1,340,322 - AO353_06035 0.85 +0.3
1,340,322 - AO353_06035 0.85 -1.9
1,340,322 - AO353_06035 0.85 +1.4
1,340,322 - AO353_06035 0.85 +0.3
1,340,322 - AO353_06035 0.85 +0.3
1,340,545 + +1.6
1,340,545 + -0.0
1,340,545 + -0.7
1,340,546 - +0.8
1,340,546 - -2.1
1,340,546 - -0.9
1,340,578 + +1.7
1,340,578 + +2.3
1,340,661 + -0.3
1,340,734 + -2.2
1,340,735 - -1.6
1,340,834 - AO353_06040 0.11 +1.0
1,340,916 + AO353_06040 0.15 +0.3
1,340,916 + AO353_06040 0.15 -0.9
1,340,916 + AO353_06040 0.15 -1.3
1,340,917 - AO353_06040 0.15 -0.5
1,341,251 - AO353_06040 0.31 +0.5
1,341,294 + AO353_06040 0.33 -0.3
1,342,172 + AO353_06040 0.75 -1.1
1,342,251 + AO353_06040 0.78 -0.0
1,342,251 + AO353_06040 0.78 -1.6
1,342,602 + +0.7
1,342,700 + -0.3
1,342,700 + -0.0
1,342,700 + -0.9
1,342,700 + -1.2
1,342,701 - -0.7
1,342,701 - +1.1
1,342,701 - +2.3
1,342,701 - +0.9
1,342,701 - +1.3
1,342,701 - +0.1
1,342,706 + -1.5
1,342,706 + +0.9
1,342,706 + -1.0
1,342,706 + +1.3
1,342,706 + -0.3
1,342,706 + -1.1
1,342,706 + -1.4
1,342,706 + -0.9
1,342,707 - -0.3
1,342,707 - -0.3
1,342,707 - +1.1
1,342,707 - -0.2
1,342,707 - -1.7
1,342,707 - -0.1
1,342,707 - -0.4
1,342,707 - -1.4
1,342,707 - -1.4
1,342,707 - +0.7
1,342,707 - +0.4
1,342,707 - -0.5
1,342,708 + -0.9
1,342,708 + +2.3
1,342,708 + +0.3
1,342,708 + -0.4
1,342,708 + -0.5
1,342,708 + -1.0
1,342,708 + -1.7
1,342,709 - +0.7
1,342,709 - +2.3
1,342,709 - -0.5
1,342,709 - +1.1
1,342,803 + -0.9
1,342,803 + -1.8
1,342,804 - +0.3
1,342,845 + +0.3
1,342,845 + -0.3
1,342,846 - -0.9
1,342,919 + -0.5
1,342,932 + +0.7
1,342,933 - -0.3
1,342,933 - -0.0
1,343,034 + +0.1
1,343,035 - -0.0
1,343,257 + AO353_06045 0.15 -1.5
1,343,257 + AO353_06045 0.15 +0.5
1,343,592 + AO353_06045 0.24 +0.3
1,343,593 - AO353_06045 0.24 -0.0

Or see this region's nucleotide sequence