Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_05800

Experiment: L-Aspartic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_05795 and AO353_05800 are separated by 503 nucleotidesAO353_05800 and AO353_05805 are separated by 2 nucleotides AO353_05795: AO353_05795 - GNAT family acetyltransferase, at 1,281,066 to 1,281,536 _05795 AO353_05800: AO353_05800 - hypothetical protein, at 1,282,040 to 1,282,276 _05800 AO353_05805: AO353_05805 - cytidine deaminase, at 1,282,279 to 1,283,898 _05805 Position (kb) 1282 1283Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1281.063 kb on + strandat 1281.063 kb on + strandat 1281.063 kb on + strandat 1281.063 kb on + strandat 1281.063 kb on + strandat 1281.063 kb on + strandat 1281.063 kb on + strandat 1281.063 kb on + strandat 1281.063 kb on + strandat 1281.063 kb on + strandat 1281.063 kb on + strandat 1281.063 kb on + strandat 1281.063 kb on + strandat 1281.063 kb on + strandat 1281.063 kb on + strandat 1281.063 kb on + strandat 1281.063 kb on + strandat 1281.064 kb on - strandat 1281.064 kb on - strandat 1281.064 kb on - strandat 1281.064 kb on - strandat 1281.064 kb on - strandat 1281.064 kb on - strandat 1281.064 kb on - strandat 1281.064 kb on - strandat 1281.064 kb on - strandat 1281.064 kb on - strandat 1281.064 kb on - strandat 1281.064 kb on - strandat 1281.064 kb on - strandat 1281.064 kb on - strandat 1281.064 kb on - strandat 1281.131 kb on + strand, within AO353_05795at 1281.131 kb on + strand, within AO353_05795at 1281.132 kb on - strand, within AO353_05795at 1281.219 kb on + strand, within AO353_05795at 1281.219 kb on + strand, within AO353_05795at 1281.220 kb on - strand, within AO353_05795at 1281.220 kb on - strand, within AO353_05795at 1281.279 kb on - strand, within AO353_05795at 1281.327 kb on + strand, within AO353_05795at 1281.328 kb on - strand, within AO353_05795at 1281.328 kb on - strand, within AO353_05795at 1281.328 kb on - strand, within AO353_05795at 1281.328 kb on - strand, within AO353_05795at 1281.342 kb on + strand, within AO353_05795at 1281.342 kb on + strand, within AO353_05795at 1281.342 kb on + strand, within AO353_05795at 1281.342 kb on + strand, within AO353_05795at 1281.343 kb on - strand, within AO353_05795at 1281.395 kb on - strand, within AO353_05795at 1281.422 kb on + strand, within AO353_05795at 1281.423 kb on - strand, within AO353_05795at 1281.423 kb on - strand, within AO353_05795at 1281.468 kb on + strand, within AO353_05795at 1281.468 kb on + strand, within AO353_05795at 1281.468 kb on + strand, within AO353_05795at 1281.468 kb on + strand, within AO353_05795at 1281.468 kb on + strand, within AO353_05795at 1281.468 kb on + strand, within AO353_05795at 1281.468 kb on + strand, within AO353_05795at 1281.469 kb on - strand, within AO353_05795at 1281.469 kb on - strand, within AO353_05795at 1281.469 kb on - strand, within AO353_05795at 1281.469 kb on - strand, within AO353_05795at 1281.470 kb on + strand, within AO353_05795at 1281.471 kb on - strand, within AO353_05795at 1281.471 kb on - strand, within AO353_05795at 1281.534 kb on + strandat 1281.534 kb on + strandat 1281.534 kb on + strandat 1281.535 kb on - strandat 1281.535 kb on - strandat 1281.535 kb on - strandat 1281.541 kb on + strandat 1281.541 kb on + strandat 1281.541 kb on + strandat 1281.541 kb on + strandat 1281.542 kb on - strandat 1281.542 kb on - strandat 1281.542 kb on - strandat 1281.586 kb on + strandat 1281.587 kb on - strandat 1281.587 kb on - strandat 1281.651 kb on - strandat 1281.652 kb on + strandat 1281.652 kb on + strandat 1281.652 kb on + strandat 1281.652 kb on + strandat 1281.652 kb on + strandat 1281.652 kb on + strandat 1281.652 kb on + strandat 1281.652 kb on + strandat 1281.652 kb on + strandat 1281.652 kb on + strandat 1281.652 kb on + strandat 1281.652 kb on + strandat 1281.652 kb on + strandat 1281.652 kb on + strandat 1281.652 kb on + strandat 1281.652 kb on + strandat 1281.652 kb on + strandat 1281.652 kb on + strandat 1281.652 kb on + strandat 1281.653 kb on - strandat 1281.653 kb on - strandat 1281.653 kb on - strandat 1281.653 kb on - strandat 1281.653 kb on - strandat 1281.653 kb on - strandat 1281.653 kb on - strandat 1281.653 kb on - strandat 1281.653 kb on - strandat 1281.653 kb on - strandat 1281.653 kb on - strandat 1281.653 kb on - strandat 1281.675 kb on + strandat 1281.675 kb on + strandat 1281.676 kb on - strandat 1281.676 kb on - strandat 1281.676 kb on - strandat 1281.741 kb on + strandat 1281.741 kb on + strandat 1281.742 kb on - strandat 1281.742 kb on - strandat 1281.742 kb on - strandat 1281.742 kb on - strandat 1281.803 kb on - strandat 1281.803 kb on - strandat 1281.811 kb on + strandat 1281.811 kb on + strandat 1281.812 kb on - strandat 1281.846 kb on - strandat 1281.846 kb on - strandat 1281.873 kb on + strandat 1281.873 kb on + strandat 1281.873 kb on + strandat 1281.874 kb on - strandat 1281.874 kb on - strandat 1281.886 kb on + strandat 1281.887 kb on - strandat 1281.887 kb on - strandat 1281.887 kb on - strandat 1281.887 kb on - strandat 1281.887 kb on - strandat 1281.887 kb on - strandat 1281.916 kb on - strandat 1281.947 kb on + strandat 1281.948 kb on - strandat 1281.951 kb on + strandat 1281.951 kb on + strandat 1281.951 kb on + strandat 1281.951 kb on + strandat 1281.951 kb on + strandat 1281.952 kb on - strandat 1281.952 kb on - strandat 1281.989 kb on + strandat 1281.989 kb on + strandat 1281.989 kb on + strandat 1281.989 kb on + strandat 1281.989 kb on + strandat 1281.989 kb on + strandat 1281.989 kb on + strandat 1281.989 kb on + strandat 1281.990 kb on - strandat 1281.990 kb on - strandat 1281.990 kb on - strandat 1282.020 kb on - strandat 1282.033 kb on - strandat 1282.042 kb on - strandat 1282.042 kb on - strandat 1282.105 kb on + strand, within AO353_05800at 1282.105 kb on + strand, within AO353_05800at 1282.105 kb on + strand, within AO353_05800at 1282.105 kb on + strand, within AO353_05800at 1282.105 kb on + strand, within AO353_05800at 1282.105 kb on + strand, within AO353_05800at 1282.121 kb on + strand, within AO353_05800at 1282.121 kb on + strand, within AO353_05800at 1282.142 kb on + strand, within AO353_05800at 1282.142 kb on + strand, within AO353_05800at 1282.142 kb on + strand, within AO353_05800at 1282.142 kb on + strand, within AO353_05800at 1282.142 kb on + strand, within AO353_05800at 1282.143 kb on - strand, within AO353_05800at 1282.143 kb on - strand, within AO353_05800at 1282.157 kb on + strand, within AO353_05800at 1282.157 kb on + strand, within AO353_05800at 1282.157 kb on + strand, within AO353_05800at 1282.158 kb on - strand, within AO353_05800at 1282.158 kb on - strand, within AO353_05800at 1282.168 kb on + strand, within AO353_05800at 1282.169 kb on - strand, within AO353_05800at 1282.280 kb on + strandat 1282.280 kb on + strandat 1282.280 kb on + strandat 1282.280 kb on + strandat 1282.280 kb on + strandat 1282.281 kb on - strandat 1282.281 kb on - strandat 1282.281 kb on - strandat 1282.281 kb on - strandat 1282.281 kb on - strandat 1282.345 kb on + strandat 1282.345 kb on + strandat 1282.346 kb on - strandat 1282.346 kb on - strandat 1282.346 kb on - strandat 1282.360 kb on + strandat 1282.360 kb on + strandat 1282.360 kb on + strandat 1282.361 kb on - strandat 1282.361 kb on - strandat 1282.361 kb on - strandat 1282.395 kb on + strandat 1282.395 kb on + strandat 1282.395 kb on + strandat 1282.395 kb on + strandat 1282.395 kb on + strandat 1282.395 kb on + strandat 1282.395 kb on + strandat 1282.395 kb on + strandat 1282.395 kb on + strandat 1282.395 kb on + strandat 1282.396 kb on - strandat 1282.396 kb on - strandat 1282.396 kb on - strandat 1282.396 kb on - strandat 1282.396 kb on - strandat 1282.396 kb on - strandat 1282.396 kb on - strandat 1282.396 kb on - strandat 1282.396 kb on - strandat 1282.396 kb on - strandat 1282.396 kb on - strandat 1282.396 kb on - strandat 1282.396 kb on - strandat 1282.396 kb on - strandat 1282.528 kb on + strand, within AO353_05805at 1282.528 kb on + strand, within AO353_05805at 1282.528 kb on + strand, within AO353_05805at 1282.528 kb on + strand, within AO353_05805at 1282.528 kb on + strandat 1282.528 kb on + strand, within AO353_05805at 1282.528 kb on + strand, within AO353_05805at 1282.528 kb on + strand, within AO353_05805at 1282.528 kb on + strand, within AO353_05805at 1282.528 kb on + strand, within AO353_05805at 1282.528 kb on + strand, within AO353_05805at 1282.528 kb on + strand, within AO353_05805at 1282.528 kb on + strand, within AO353_05805at 1282.528 kb on + strand, within AO353_05805at 1282.528 kb on + strand, within AO353_05805at 1282.528 kb on + strand, within AO353_05805at 1282.529 kb on - strand, within AO353_05805at 1282.529 kb on - strand, within AO353_05805at 1282.529 kb on - strand, within AO353_05805at 1282.529 kb on - strand, within AO353_05805at 1282.529 kb on - strand, within AO353_05805at 1282.529 kb on - strand, within AO353_05805at 1282.529 kb on - strand, within AO353_05805at 1282.529 kb on - strand, within AO353_05805at 1282.590 kb on - strand, within AO353_05805at 1282.604 kb on + strand, within AO353_05805at 1282.605 kb on - strand, within AO353_05805at 1282.630 kb on + strand, within AO353_05805at 1282.630 kb on + strand, within AO353_05805at 1282.662 kb on + strand, within AO353_05805at 1282.662 kb on + strand, within AO353_05805at 1282.663 kb on - strand, within AO353_05805at 1282.717 kb on + strand, within AO353_05805at 1282.721 kb on - strand, within AO353_05805at 1282.721 kb on - strand, within AO353_05805at 1282.911 kb on + strand, within AO353_05805at 1282.964 kb on + strand, within AO353_05805at 1282.964 kb on + strand, within AO353_05805at 1282.965 kb on - strand, within AO353_05805at 1283.008 kb on + strand, within AO353_05805at 1283.009 kb on - strand, within AO353_05805at 1283.009 kb on - strand, within AO353_05805at 1283.009 kb on - strand, within AO353_05805at 1283.009 kb on - strand, within AO353_05805at 1283.009 kb on - strand, within AO353_05805at 1283.009 kb on - strand, within AO353_05805at 1283.010 kb on + strand, within AO353_05805at 1283.094 kb on - strand, within AO353_05805at 1283.094 kb on - strand, within AO353_05805at 1283.140 kb on + strand, within AO353_05805at 1283.141 kb on - strand, within AO353_05805at 1283.191 kb on - strand, within AO353_05805at 1283.191 kb on - strand, within AO353_05805

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
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1,281,063 + +2.1
1,281,063 + -1.7
1,281,063 + -0.0
1,281,063 + +0.4
1,281,063 + -0.9
1,281,063 + -0.5
1,281,063 + +0.1
1,281,063 + +1.3
1,281,063 + -1.9
1,281,063 + +1.3
1,281,063 + +0.1
1,281,063 + +0.3
1,281,063 + -0.2
1,281,063 + -0.0
1,281,063 + -0.0
1,281,063 + +2.6
1,281,063 + +1.3
1,281,064 - -1.6
1,281,064 - -0.2
1,281,064 - -1.0
1,281,064 - -0.9
1,281,064 - -0.9
1,281,064 - -0.0
1,281,064 - +0.7
1,281,064 - -0.5
1,281,064 - -0.5
1,281,064 - -0.1
1,281,064 - +1.7
1,281,064 - -0.4
1,281,064 - +0.4
1,281,064 - -0.1
1,281,064 - -1.2
1,281,131 + AO353_05795 0.14 +0.7
1,281,131 + AO353_05795 0.14 -1.8
1,281,132 - AO353_05795 0.14 -0.3
1,281,219 + AO353_05795 0.32 -0.9
1,281,219 + AO353_05795 0.32 -0.7
1,281,220 - AO353_05795 0.33 -1.0
1,281,220 - AO353_05795 0.33 +0.3
1,281,279 - AO353_05795 0.45 -1.2
1,281,327 + AO353_05795 0.55 -0.9
1,281,328 - AO353_05795 0.56 +0.3
1,281,328 - AO353_05795 0.56 +0.8
1,281,328 - AO353_05795 0.56 -0.7
1,281,328 - AO353_05795 0.56 +0.0
1,281,342 + AO353_05795 0.59 +0.7
1,281,342 + AO353_05795 0.59 +0.1
1,281,342 + AO353_05795 0.59 -2.6
1,281,342 + AO353_05795 0.59 -1.0
1,281,343 - AO353_05795 0.59 -0.5
1,281,395 - AO353_05795 0.70 +0.3
1,281,422 + AO353_05795 0.76 -0.0
1,281,423 - AO353_05795 0.76 -0.1
1,281,423 - AO353_05795 0.76 -2.0
1,281,468 + AO353_05795 0.85 -1.2
1,281,468 + AO353_05795 0.85 -0.7
1,281,468 + AO353_05795 0.85 -0.3
1,281,468 + AO353_05795 0.85 -1.9
1,281,468 + AO353_05795 0.85 -2.3
1,281,468 + AO353_05795 0.85 -0.5
1,281,468 + AO353_05795 0.85 -0.6
1,281,469 - AO353_05795 0.86 +0.7
1,281,469 - AO353_05795 0.86 +0.3
1,281,469 - AO353_05795 0.86 -0.0
1,281,469 - AO353_05795 0.86 -0.2
1,281,470 + AO353_05795 0.86 -0.2
1,281,471 - AO353_05795 0.86 -1.5
1,281,471 - AO353_05795 0.86 -1.3
1,281,534 + +2.3
1,281,534 + -1.0
1,281,534 + +0.1
1,281,535 - +1.1
1,281,535 - -0.1
1,281,535 - +0.3
1,281,541 + -0.9
1,281,541 + +0.5
1,281,541 + -0.0
1,281,541 + -0.5
1,281,542 - -1.2
1,281,542 - +0.1
1,281,542 - -0.6
1,281,586 + +1.3
1,281,587 - -1.0
1,281,587 - -0.1
1,281,651 - -0.2
1,281,652 + +0.5
1,281,652 + +0.1
1,281,652 + +1.1
1,281,652 + -0.6
1,281,652 + -1.5
1,281,652 + +0.3
1,281,652 + -0.5
1,281,652 + -1.3
1,281,652 + -1.4
1,281,652 + +1.7
1,281,652 + -0.8
1,281,652 + -0.6
1,281,652 + -0.3
1,281,652 + +0.3
1,281,652 + +0.0
1,281,652 + -2.2
1,281,652 + -0.9
1,281,652 + -0.3
1,281,652 + -1.8
1,281,653 - -0.4
1,281,653 - -0.3
1,281,653 - -0.2
1,281,653 - -1.6
1,281,653 - -0.5
1,281,653 - +0.6
1,281,653 - -0.3
1,281,653 - -1.3
1,281,653 - +0.4
1,281,653 - +0.5
1,281,653 - -2.2
1,281,653 - +0.9
1,281,675 + -1.4
1,281,675 + +0.1
1,281,676 - +0.9
1,281,676 - -0.4
1,281,676 - -0.4
1,281,741 + +0.3
1,281,741 + -1.0
1,281,742 - -0.4
1,281,742 - +0.1
1,281,742 - +0.1
1,281,742 - -0.7
1,281,803 - -1.0
1,281,803 - -0.5
1,281,811 + -1.5
1,281,811 + -0.3
1,281,812 - -0.2
1,281,846 - +2.7
1,281,846 - +0.7
1,281,873 + +0.7
1,281,873 + +0.7
1,281,873 + -1.2
1,281,874 - -0.3
1,281,874 - -0.7
1,281,886 + -0.7
1,281,887 - -0.9
1,281,887 - -0.5
1,281,887 - -0.2
1,281,887 - -0.9
1,281,887 - -2.3
1,281,887 - +0.9
1,281,916 - +1.3
1,281,947 + -1.0
1,281,948 - -2.9
1,281,951 + -0.0
1,281,951 + -0.3
1,281,951 + -1.7
1,281,951 + +0.6
1,281,951 + -0.0
1,281,952 - +0.3
1,281,952 - -1.9
1,281,989 + -0.9
1,281,989 + +1.3
1,281,989 + +0.7
1,281,989 + +1.0
1,281,989 + +0.3
1,281,989 + -0.1
1,281,989 + +1.4
1,281,989 + -1.5
1,281,990 - -0.9
1,281,990 - -1.3
1,281,990 - +0.8
1,282,020 - +2.1
1,282,033 - +0.1
1,282,042 - -0.5
1,282,042 - -0.5
1,282,105 + AO353_05800 0.27 -0.2
1,282,105 + AO353_05800 0.27 +0.7
1,282,105 + AO353_05800 0.27 +0.7
1,282,105 + AO353_05800 0.27 -1.2
1,282,105 + AO353_05800 0.27 +0.3
1,282,105 + AO353_05800 0.27 -0.7
1,282,121 + AO353_05800 0.34 -1.7
1,282,121 + AO353_05800 0.34 -0.5
1,282,142 + AO353_05800 0.43 +0.3
1,282,142 + AO353_05800 0.43 -0.3
1,282,142 + AO353_05800 0.43 -1.2
1,282,142 + AO353_05800 0.43 -0.7
1,282,142 + AO353_05800 0.43 -0.0
1,282,143 - AO353_05800 0.43 -0.4
1,282,143 - AO353_05800 0.43 -1.2
1,282,157 + AO353_05800 0.49 -0.7
1,282,157 + AO353_05800 0.49 -1.9
1,282,157 + AO353_05800 0.49 -2.1
1,282,158 - AO353_05800 0.50 -1.8
1,282,158 - AO353_05800 0.50 -0.4
1,282,168 + AO353_05800 0.54 -0.5
1,282,169 - AO353_05800 0.54 -0.5
1,282,280 + -0.5
1,282,280 + +0.2
1,282,280 + -1.2
1,282,280 + -1.0
1,282,280 + -1.0
1,282,281 - +1.3
1,282,281 - -0.3
1,282,281 - -0.3
1,282,281 - -1.5
1,282,281 - -0.9
1,282,345 + +1.3
1,282,345 + +0.5
1,282,346 - +1.0
1,282,346 - +1.0
1,282,346 - -1.0
1,282,360 + -0.6
1,282,360 + +2.3
1,282,360 + -1.6
1,282,361 - +0.5
1,282,361 - +0.9
1,282,361 - -1.1
1,282,395 + +0.5
1,282,395 + -0.9
1,282,395 + -0.2
1,282,395 + -0.3
1,282,395 + -0.5
1,282,395 + +0.6
1,282,395 + -0.6
1,282,395 + +0.2
1,282,395 + -0.5
1,282,395 + -0.7
1,282,396 - +0.3
1,282,396 - +0.1
1,282,396 - +1.1
1,282,396 - +0.8
1,282,396 - -0.6
1,282,396 - -0.8
1,282,396 - +0.7
1,282,396 - -1.4
1,282,396 - -0.2
1,282,396 - +0.6
1,282,396 - -1.4
1,282,396 - +0.3
1,282,396 - -0.3
1,282,396 - +0.4
1,282,528 + AO353_05805 0.15 -0.8
1,282,528 + AO353_05805 0.15 -1.9
1,282,528 + AO353_05805 0.15 +1.3
1,282,528 + AO353_05805 0.15 +0.7
1,282,528 + +1.3
1,282,528 + AO353_05805 0.15 +0.1
1,282,528 + AO353_05805 0.15 +0.6
1,282,528 + AO353_05805 0.15 -0.1
1,282,528 + AO353_05805 0.15 +0.4
1,282,528 + AO353_05805 0.15 -0.2
1,282,528 + AO353_05805 0.15 -0.7
1,282,528 + AO353_05805 0.15 +2.7
1,282,528 + AO353_05805 0.15 -0.3
1,282,528 + AO353_05805 0.15 -1.1
1,282,528 + AO353_05805 0.15 -0.4
1,282,528 + AO353_05805 0.15 -0.3
1,282,529 - AO353_05805 0.15 -1.0
1,282,529 - AO353_05805 0.15 -0.2
1,282,529 - AO353_05805 0.15 +0.1
1,282,529 - AO353_05805 0.15 -0.2
1,282,529 - AO353_05805 0.15 +0.1
1,282,529 - AO353_05805 0.15 +0.3
1,282,529 - AO353_05805 0.15 -0.7
1,282,529 - AO353_05805 0.15 +0.3
1,282,590 - AO353_05805 0.19 -0.2
1,282,604 + AO353_05805 0.20 +0.4
1,282,605 - AO353_05805 0.20 -0.0
1,282,630 + AO353_05805 0.22 -1.1
1,282,630 + AO353_05805 0.22 +2.3
1,282,662 + AO353_05805 0.24 -1.2
1,282,662 + AO353_05805 0.24 +1.0
1,282,663 - AO353_05805 0.24 -0.9
1,282,717 + AO353_05805 0.27 -0.0
1,282,721 - AO353_05805 0.27 -0.9
1,282,721 - AO353_05805 0.27 +1.2
1,282,911 + AO353_05805 0.39 +1.1
1,282,964 + AO353_05805 0.42 +0.7
1,282,964 + AO353_05805 0.42 -1.0
1,282,965 - AO353_05805 0.42 -0.9
1,283,008 + AO353_05805 0.45 +2.6
1,283,009 - AO353_05805 0.45 +0.3
1,283,009 - AO353_05805 0.45 +0.3
1,283,009 - AO353_05805 0.45 +0.7
1,283,009 - AO353_05805 0.45 -0.3
1,283,009 - AO353_05805 0.45 +0.9
1,283,009 - AO353_05805 0.45 +1.3
1,283,010 + AO353_05805 0.45 -1.3
1,283,094 - AO353_05805 0.50 +0.7
1,283,094 - AO353_05805 0.50 -1.6
1,283,140 + AO353_05805 0.53 -1.6
1,283,141 - AO353_05805 0.53 -0.1
1,283,191 - AO353_05805 0.56 -1.7
1,283,191 - AO353_05805 0.56 +0.4

Or see this region's nucleotide sequence